Spo19390 (gene) | SpinachBase

Overview


Name	Spo19390
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Embryo defective 1923
Location	SpoScf_02561 : 59200 .. 60371 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATCTTTTGGAATGAGAACTCATTTTAATGGAGGAAAAACTAGCTTTACAGGTGCTGTATTCGATGACAGCCACATTGGTATGTCTGTTGTTGCCTCCTTGATTTTAGAGAATTTTTTTGGATAAGTTTTTTCTAGTGTATCGTGGCGGCTAATATGGACATAAAAGATGATTGGAAGATTTATGGTGTCCTATACTTGAATTAGTTTTAGCTGTACTGAACTCTATGGTTCTGCTCAGCTTGTTCCAACCCCTGGCATTTTACTGGTTGGTGATATGTTGTAACTTCACTAACTTGTAAGTCTGTTTACTAATTACTGAAACCAAATGTTTCTTGTCCTTCTTGAAGCTTGCTTCTACTTACTCTGTGCTGGCCTTGCTAGGGTTTACAATACTTCAGTTTTTCAGTGTGGTATTTTTTTAATGTTATCGCCATTTGCTTCATGCTGACTTCGCTTATGATATTTGCAGCGCTGGCATTTCTCATCTATGCATGGAGATCAGTCCTGTGGGAACTTTCTAATTGGCGGAAGCTGTTATTGGGCATTTTTCAGTTTGTTGGATACCTATCAAAACTTGTGTTGGCGTTTATATTCCATTTTATAGGTGACCCAATCACGTACACTGTTCTCTTTGTTGAGTCTACAGTTTATGCCATCCACTCCTTTTACTCCAGTATAGTGACGTCTGCTCCAATACCACAATTAACCTTTATCATTATGCTCGCTTCTACTGTACTGGCGATTGGAGAAGCAGCTTCTCCAGACTCAATAAAGTGTCAACCATATCTTCTTACTGCAGCTGGAATCATTGGTTATGGAGCAGTGAGAGGTTTCATCACTGAACCAGTCTTCTTGTTGATGCTTGTTGGACTCTTCAGCTATTCCCGATTTTTGAAGAAAAGGGACAATGTTTGTTCTGCATTACCTATTGCAACTGTACTGGCCTCTGTCGGTGAGCCGTGGGTTAGAATTATGGCAATCATCTCATTTACAGCATTGGCTATTTATCACCATTCAAAGAATCTTAAACAAGTAAATGAAGTATCTGAAGTCACTTCCTTCAGAGGAAAAGTTCCACTTCCTTTGTTGGGTGTCGCATTAGCCATTGGAATCCGTGTTGCTGCTAAGTGGGCTGGTTATCGCCATTTGACATGGATGATTATATAG

mRNA sequence

ATGAGATCTTTTGGAATGAGAACTCATTTTAATGGAGGAAAAACTAGCTTTACAGGTGCTGTATTCGATGACAGCCACATTGCGCTGGCATTTCTCATCTATGCATGGAGATCAGTCCTGTGGGAACTTTCTAATTGGCGGAAGCTGTTATTGGGCATTTTTCAGTTTGTTGGATACCTATCAAAACTTGTGTTGGCGTTTATATTCCATTTTATAGGTGACCCAATCACGTACACTGTTCTCTTTGTTGAGTCTACAGTTTATGCCATCCACTCCTTTTACTCCAGTATAGTGACGTCTGCTCCAATACCACAATTAACCTTTATCATTATGCTCGCTTCTACTGTACTGGCGATTGGAGAAGCAGCTTCTCCAGACTCAATAAAGTGTCAACCATATCTTCTTACTGCAGCTGGAATCATTGGTTATGGAGCAGTGAGAGGTTTCATCACTGAACCAGTCTTCTTGTTGATGCTTGTTGGACTCTTCAGCTATTCCCGATTTTTGAAGAAAAGGGACAATGTTTGTTCTGCATTACCTATTGCAACTGTACTGGCCTCTGTCGGTGAGCCGTGGGTTAGAATTATGGCAATCATCTCATTTACAGCATTGGCTATTTATCACCATTCAAAGAATCTTAAACAAGTAAATGAAGTATCTGAAGTCACTTCCTTCAGAGGAAAAGTTCCACTTCCTTTGTTGGGTGTCGCATTAGCCATTGGAATCCGTGTTGCTGCTAAGTGGGCTGGTTATCGCCATTTGACATGGATGATTATATAG

Coding sequence (CDS)

ATGAGATCTTTTGGAATGAGAACTCATTTTAATGGAGGAAAAACTAGCTTTACAGGTGCTGTATTCGATGACAGCCACATTGCGCTGGCATTTCTCATCTATGCATGGAGATCAGTCCTGTGGGAACTTTCTAATTGGCGGAAGCTGTTATTGGGCATTTTTCAGTTTGTTGGATACCTATCAAAACTTGTGTTGGCGTTTATATTCCATTTTATAGGTGACCCAATCACGTACACTGTTCTCTTTGTTGAGTCTACAGTTTATGCCATCCACTCCTTTTACTCCAGTATAGTGACGTCTGCTCCAATACCACAATTAACCTTTATCATTATGCTCGCTTCTACTGTACTGGCGATTGGAGAAGCAGCTTCTCCAGACTCAATAAAGTGTCAACCATATCTTCTTACTGCAGCTGGAATCATTGGTTATGGAGCAGTGAGAGGTTTCATCACTGAACCAGTCTTCTTGTTGATGCTTGTTGGACTCTTCAGCTATTCCCGATTTTTGAAGAAAAGGGACAATGTTTGTTCTGCATTACCTATTGCAACTGTACTGGCCTCTGTCGGTGAGCCGTGGGTTAGAATTATGGCAATCATCTCATTTACAGCATTGGCTATTTATCACCATTCAAAGAATCTTAAACAAGTAAATGAAGTATCTGAAGTCACTTCCTTCAGAGGAAAAGTTCCACTTCCTTTGTTGGGTGTCGCATTAGCCATTGGAATCCGTGTTGCTGCTAAGTGGGCTGGTTATCGCCATTTGACATGGATGATTATATAG

Protein sequence

MRSFGMRTHFNGGKTSFTGAVFDDSHIALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVESTVYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAVRGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAIYHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19390.1	Spo19390.1	mRNA

Homology

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BLAST of Spo19390.1 vs. NCBI nr
Match: gi|902037826|gb|KNA02683.1| (hypothetical protein SOVF_216360, partial [Spinacia oleracea])

HSP 1 Score: 447.2 bits (1149), Expect = 2.000e-122
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1

		  
Query: 29  LAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVESTVY 88
           LAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVESTVY
Sbjct: 1   LAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVESTVY 60

Query: 89  AIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAVRG 148
           AIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAVRG
Sbjct: 61  AIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAVRG 120

Query: 149 FITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAIYH 208
           FITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAIYH
Sbjct: 121 FITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAIYH 180

Query: 209 HSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
           HSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII
Sbjct: 181 HSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 231

[Close]

BLAST of Spo19390.1 vs. NCBI nr
Match: gi|731356094|ref|XP_010689490.1| (PREDICTED: uncharacterized protein LOC104903192 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 363.6 bits (932), Expect = 2.800e-97
Identity = 186/233 (79.83%), Postives = 204/233 (87.55%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           IAL FLIYAWR VLWELSNWR L  GIF FVGY+ KL+LA I+ FIGDPITYTVL+VE+ 
Sbjct: 118 IALPFLIYAWRLVLWELSNWRNLFFGIFPFVGYILKLILALIYRFIGDPITYTVLYVETA 177

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           V+A  S YSSIVTSAPIP+LTFIIML+ TVLAIGEAASP+SIKCQPYLLTAAG+IGYGAV
Sbjct: 178 VHATRSLYSSIVTSAPIPELTFIIMLSLTVLAIGEAASPNSIKCQPYLLTAAGLIGYGAV 237

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
           RG I EP+F LMLVGLFS+SRF KKRD V SALPIATVLASVGEPWVR++AIISFTALAI
Sbjct: 238 RGVIIEPLFWLMLVGLFSFSRFFKKRDYVSSALPIATVLASVGEPWVRVLAIISFTALAI 297

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
           +HHSK L + N   EVTS  G +PLPLLGVALAIGIRVAAKWAGYRHLTWMI+
Sbjct: 298 HHHSKELAEGNAKGEVTSSSGNIPLPLLGVALAIGIRVAAKWAGYRHLTWMIV 350

[Close]

BLAST of Spo19390.1 vs. NCBI nr
Match: gi|645248274|ref|XP_008230221.1| (PREDICTED: uncharacterized protein LOC103329522 [Prunus mume])

HSP 1 Score: 307.4 bits (786), Expect = 2.400e-80
Identity = 151/233 (64.81%), Postives = 190/233 (81.55%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           +AL FLIYAWR+VL EL+NWRK  L + +FVGYL KL+LA IFHF+GDPIT+ + F+E+T
Sbjct: 95  VALVFLIYAWRAVLLELANWRKAALAVVRFVGYLLKLILALIFHFLGDPITFIIRFIETT 154

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           +YA+ SFYS IV  APIP+LT +IMLASTVLAI EA  P+SI CQP+LLTA+G++GY AV
Sbjct: 155 IYALRSFYSGIVAYAPIPELTTVIMLASTVLAIAEAVVPNSINCQPFLLTASGVVGYAAV 214

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
            G+I+EP F  +LVGL+ YSRF+KKRD+V SALP A VLA+VGEP++R++ I S+ +LAI
Sbjct: 215 TGYISEPFFWTILVGLYGYSRFVKKRDDVTSALPAAAVLAAVGEPYIRVLVISSYLSLAI 274

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
            HHSK L +  E  E+     K+P+PLLGVALAIGIR+AAKWAGYRHLTWMI+
Sbjct: 275 LHHSKKLSERKE--EIVVTNRKLPMPLLGVALAIGIRLAAKWAGYRHLTWMIV 325

[Close]

BLAST of Spo19390.1 vs. NCBI nr
Match: gi|595938078|ref|XP_007215629.1| (hypothetical protein PRUPE_ppa008067mg [Prunus persica])

HSP 1 Score: 303.9 bits (777), Expect = 2.700e-79
Identity = 149/233 (63.95%), Postives = 188/233 (80.69%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           +AL FLIYAWR+VL EL+NWRK  L + +FVGYL KL+LA IFHF+GDPIT+ + F+E+T
Sbjct: 116 VALVFLIYAWRAVLLELANWRKAALAVVRFVGYLLKLILALIFHFLGDPITFIIRFIETT 175

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           +Y + SFYS IV  APIP+LT +IMLASTVLAI EA  P+SI CQP+LLTA+G++GY AV
Sbjct: 176 IYTLRSFYSGIVAYAPIPELTTVIMLASTVLAIAEAVVPNSINCQPFLLTASGVVGYAAV 235

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
            G+I+EP F  +L+GL+ YSRF+KKRD+V SALP A VLA+VGEP++R++ I S+ ALAI
Sbjct: 236 TGYISEPFFWTILMGLYGYSRFVKKRDDVTSALPAAAVLAAVGEPYIRVLVISSYLALAI 295

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
            HHSK L +  E  E+     K+P+PLLGVALAIGI +AAKWAGYRHLTWMI+
Sbjct: 296 LHHSKKLSERKE--EIVVTNRKLPMPLLGVALAIGIHLAAKWAGYRHLTWMIV 346

[Close]

BLAST of Spo19390.1 vs. NCBI nr
Match: gi|694320265|ref|XP_009350622.1| (PREDICTED: uncharacterized protein LOC103942134 [Pyrus x bretschneideri])

HSP 1 Score: 300.4 bits (768), Expect = 2.900e-78
Identity = 144/233 (61.80%), Postives = 186/233 (79.83%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           +AL FLIYAWR+VL EL+NWRK   G+ +FVGYL KL+LA IFHFIGDPIT  + F+E+T
Sbjct: 116 VALVFLIYAWRAVLLELANWRKAAEGVVRFVGYLLKLILALIFHFIGDPITSVIRFIETT 175

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           +YAI SFYS IV  APIP+LT +I+LASTVLAI EA  P+++ CQP+LLTA+G++GY AV
Sbjct: 176 LYAIRSFYSGIVAYAPIPELTTVIILASTVLAIAEAVVPNAVNCQPFLLTASGVVGYAAV 235

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
            G+I+EP+F  +LVG + YSR +KKRD++ SALP A V++++GEPWVR++ I S+ ALAI
Sbjct: 236 AGYISEPLFWTILVGFYGYSRLVKKRDDITSALPAAAVMSAIGEPWVRVLVIASYLALAI 295

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
           +HHSK +    E  E+     K+P+PLLG  LAIGIR+AAKWAGYRHLTWMI+
Sbjct: 296 FHHSKKVSDTEE--EIVVANRKLPMPLLGAGLAIGIRLAAKWAGYRHLTWMIV 346

[Close]

BLAST of Spo19390.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7M2_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_216360 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.400e-122
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1

		  
Query: 29  LAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVESTVY 88
           LAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVESTVY
Sbjct: 1   LAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVESTVY 60

Query: 89  AIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAVRG 148
           AIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAVRG
Sbjct: 61  AIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAVRG 120

Query: 149 FITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAIYH 208
           FITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAIYH
Sbjct: 121 FITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAIYH 180

Query: 209 HSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
           HSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII
Sbjct: 181 HSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 231

[Close]

BLAST of Spo19390.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BLS7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g207650 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 2.000e-97
Identity = 186/233 (79.83%), Postives = 204/233 (87.55%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           IAL FLIYAWR VLWELSNWR L  GIF FVGY+ KL+LA I+ FIGDPITYTVL+VE+ 
Sbjct: 118 IALPFLIYAWRLVLWELSNWRNLFFGIFPFVGYILKLILALIYRFIGDPITYTVLYVETA 177

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           V+A  S YSSIVTSAPIP+LTFIIML+ TVLAIGEAASP+SIKCQPYLLTAAG+IGYGAV
Sbjct: 178 VHATRSLYSSIVTSAPIPELTFIIMLSLTVLAIGEAASPNSIKCQPYLLTAAGLIGYGAV 237

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
           RG I EP+F LMLVGLFS+SRF KKRD V SALPIATVLASVGEPWVR++AIISFTALAI
Sbjct: 238 RGVIIEPLFWLMLVGLFSFSRFFKKRDYVSSALPIATVLASVGEPWVRVLAIISFTALAI 297

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
           +HHSK L + N   EVTS  G +PLPLLGVALAIGIRVAAKWAGYRHLTWMI+
Sbjct: 298 HHHSKELAEGNAKGEVTSSSGNIPLPLLGVALAIGIRVAAKWAGYRHLTWMIV 350

[Close]

BLAST of Spo19390.1 vs. UniProtKB/TrEMBL
Match: M5X5M3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008067mg PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.900e-79
Identity = 149/233 (63.95%), Postives = 188/233 (80.69%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           +AL FLIYAWR+VL EL+NWRK  L + +FVGYL KL+LA IFHF+GDPIT+ + F+E+T
Sbjct: 116 VALVFLIYAWRAVLLELANWRKAALAVVRFVGYLLKLILALIFHFLGDPITFIIRFIETT 175

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           +Y + SFYS IV  APIP+LT +IMLASTVLAI EA  P+SI CQP+LLTA+G++GY AV
Sbjct: 176 IYTLRSFYSGIVAYAPIPELTTVIMLASTVLAIAEAVVPNSINCQPFLLTASGVVGYAAV 235

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
            G+I+EP F  +L+GL+ YSRF+KKRD+V SALP A VLA+VGEP++R++ I S+ ALAI
Sbjct: 236 TGYISEPFFWTILMGLYGYSRFVKKRDDVTSALPAAAVLAAVGEPYIRVLVISSYLALAI 295

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
            HHSK L +  E  E+     K+P+PLLGVALAIGI +AAKWAGYRHLTWMI+
Sbjct: 296 LHHSKKLSERKE--EIVVTNRKLPMPLLGVALAIGIHLAAKWAGYRHLTWMIV 346

[Close]

BLAST of Spo19390.1 vs. UniProtKB/TrEMBL
Match: A0A059CDH9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00334 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.600e-76
Identity = 145/233 (62.23%), Postives = 183/233 (78.54%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           +ALAFL+YAWR+VL+ELSNW+K  L I  FVGYLSKLVLA IFHFIGDPIT T+  +E+ 
Sbjct: 133 VALAFLVYAWRAVLFELSNWKKAALAIVGFVGYLSKLVLALIFHFIGDPITSTIRCIETA 192

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           +Y++ +FYS IV  AP+P+LT IIMLAS V AIGEA  P+ +  QPY LT AG+IGY AV
Sbjct: 193 IYSVRAFYSGIVAYAPVPELTVIIMLASAVAAIGEAVVPNCVSSQPYSLTVAGLIGYAAV 252

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
           RG+I+EP+   +LVGL+ +SR +KKRD+V S LP A V+A++GEPWVR++ I S+ ALAI
Sbjct: 253 RGYISEPLLWTLLVGLYGFSRIIKKRDDVSSLLPAAAVMAAIGEPWVRLVVIASYLALAI 312

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
            HHS+ L +  EV EV + R ++P+PL   ALAIGIRVAAKW GYRHLTWMI+
Sbjct: 313 SHHSRKLSEGKEVEEVVTNR-RLPMPLFVAALAIGIRVAAKWVGYRHLTWMIV 364

[Close]

BLAST of Spo19390.1 vs. UniProtKB/TrEMBL
Match: F6HHK0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0057g00300 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 7.300e-76
Identity = 143/234 (61.11%), Postives = 183/234 (78.21%), Query Frame = 1

		  
Query: 26  HIALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVES 85
           +IAL FL+YAWR+VLWELSNWRK  L +  F GYL KL LA IFHFIG+P+T  +  VE+
Sbjct: 128 YIALVFLVYAWRTVLWELSNWRKAALAVVYFAGYLLKLALALIFHFIGNPVTSLIRCVET 187

Query: 86  TVYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGA 145
            +Y I +FYSSIVT AP+P+LT II+LAS VLAI EA  PDS+  QPYLLT +G+IG+ A
Sbjct: 188 ALYTIRAFYSSIVTYAPVPELTTIIILASAVLAIAEATVPDSVNSQPYLLTVSGLIGFAA 247

Query: 146 VRGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALA 205
           V+ FI+EP F  +LVGLF++++ +KKRD V SALP+A VLA+VG+PW+R++ I S+TALA
Sbjct: 248 VKDFISEPFFWTLLVGLFAFAQLVKKRDYVSSALPVAAVLAAVGQPWLRVVVIASYTALA 307

Query: 206 IYHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
           I HHSK +    E  EV +   ++P+PLL V+LAIGI +AAKWAGYRHLTWMI+
Sbjct: 308 ISHHSKKISDGKEEGEVAATSRRLPVPLLCVSLAIGIHLAAKWAGYRHLTWMIV 361

[Close]

BLAST of Spo19390.1 vs. TAIR (Arabidopsis)
Match: AT4G28210.1 (embryo defective 1923)

HSP 1 Score: 270.4 bits (690), Expect = 1.200e-72
Identity = 134/233 (57.51%), Postives = 175/233 (75.11%), Query Frame = 1

		  
Query: 27  IALAFLIYAWRSVLWELSNWRKLLLGIFQFVGYLSKLVLAFIFHFIGDPITYTVLFVEST 86
           +AL FL+YAWR+VL+ELSNWRK    I  FVG LSK  LA +FHFIGDPIT  +  VE+ 
Sbjct: 119 VALGFLVYAWRAVLFELSNWRKAAFAILAFVGDLSKFALALVFHFIGDPITSLISLVETA 178

Query: 87  VYAIHSFYSSIVTSAPIPQLTFIIMLASTVLAIGEAASPDSIKCQPYLLTAAGIIGYGAV 146
           +Y++ +FYS IV   P+ +LT +I+LAS+VLAIGEA +P+SI  QPY++T AG++GY AV
Sbjct: 179 MYSVRAFYSGIVAYTPVRELTTVILLASSVLAIGEAVAPESISKQPYVVTIAGLVGYAAV 238

Query: 147 RGFITEPVFLLMLVGLFSYSRFLKKRDNVCSALPIATVLASVGEPWVRIMAIISFTALAI 206
           + +I+EP F  +L+GL+ YSR +KKRD+V SALP A VLA VGEPWVR++AI  + ALA+
Sbjct: 239 QSYISEPFFWTVLLGLYGYSRLIKKRDDVTSALPSAAVLAGVGEPWVRVVAITGYLALAM 298

Query: 207 YHHSKNLKQVNEVSEVTSFRGKVPLPLLGVALAIGIRVAAKWAGYRHLTWMII 260
           YH+S    + +   E    R   P+PLL  ALAIG+R+AAKWAGYRHLTWMI+
Sbjct: 299 YHNS---TKTSSEEESQILRRAPPMPLLAAALAIGVRLAAKWAGYRHLTWMIV 348

The following BLAST results are available for this feature:

BLAST of Spo19390.1 vs. NCBI nr
BLAST of Spo19390.1 vs. UniProtKB/TrEMBL
BLAST of Spo19390.1 vs. ExPASy Swiss-Prot
BLAST of Spo19390.1 vs. TAIR (Arabidopsis)

BLAST of Spo19390.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902037826\|gb\|KNA02683.1\|	2.0e-122	100.	hypothetical protein SOVF_2163...	[more]
gi\|731356094\|ref\|XP_010689490.1\|	2.8e-97	79.8	PREDICTED: uncharacterized pro...	[more]
gi\|645248274\|ref\|XP_008230221.1\|	2.4e-80	64.8	PREDICTED: uncharacterized pro...	[more]
gi\|595938078\|ref\|XP_007215629.1\|	2.7e-79	63.9	hypothetical protein PRUPE_ppa...	[more]
gi\|694320265\|ref\|XP_009350622.1\|	2.9e-78	61.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo19390.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9Q7M2_SPIOL	1.4e-122	100.	Uncharacterized protein (Fragm...	[more]
A0A0J8BLS7_BETVU	2.0e-97	79.8	Uncharacterized protein OS=Bet...	[more]
M5X5M3_PRUPE	1.9e-79	63.9	Uncharacterized protein OS=Pru...	[more]
A0A059CDH9_EUCGR	5.6e-76	62.2	Uncharacterized protein OS=Euc...	[more]
F6HHK0_VITVI	7.3e-76	61.1	Putative uncharacterized prote...	[more]

BLAST of Spo19390.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

BLAST of Spo19390.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT4G28210.1	1.2e-72	57.5	embryo defective 1923	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006566	threonine metabolic process
biological_process	GO:0019279	L-methionine biosynthetic process from L-homoserine via cystathionine
biological_process	GO:0008152	metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006869	lipid transport
biological_process	GO:0046907	intracellular transport
biological_process	GO:0016482	cytosolic transport
biological_process	GO:0006364	rRNA processing
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0003333	amino acid transmembrane transport
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0006534	cysteine metabolic process
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0009821	alkaloid biosynthetic process
biological_process	GO:0032259	methylation
biological_process	GO:0006090	pyruvate metabolic process
biological_process	GO:2001295	malonyl-CoA biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0016020	membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0009343	biotin carboxylase complex
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004121	cystathionine beta-lyase activity
molecular_function	GO:0044540	L-cystine L-cysteine-lyase (deaminating)
molecular_function	GO:0004123	cystathionine gamma-lyase activity
molecular_function	GO:0080146	L-cysteine desulfhydrase activity
molecular_function	GO:0015171	amino acid transmembrane transporter activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005488	binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004075	biotin carboxylase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003989	acetyl-CoA carboxylase activity
molecular_function	GO:0030750	putrescine N-methyltransferase activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0030170	pyridoxal phosphate binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14381	0.73	Barchart \| Table
Spo04282	0.72	Barchart \| Table
Spo26232	0.70	Barchart \| Table
Spo10736	0.69	Barchart \| Table
Spo26194	0.69	Barchart \| Table
Spo21192	0.68	Barchart \| Table
Spo17532	0.68	Barchart \| Table
Spo15236	0.68	Barchart \| Table
Spo01381	0.67	Barchart \| Table
Spo09870	0.67	Barchart \| Table
Spo13031	0.67	Barchart \| Table
Spo16414	0.67	Barchart \| Table
Spo25244	0.67	Barchart \| Table
Spo22592	0.66	Barchart \| Table
Spo26509	0.66	Barchart \| Table
Spo13731	0.65	Barchart \| Table