Spo19438 (gene) | SpinachBase

Overview


Name	Spo19438
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	DNAJ heat shock N-terminal domain-containing protein
Location	chr1 : 33773971 .. 33776638 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGCATGTACGAACCACAAATTGTATGGACAAAATGAATCATTCGGAGATAGGCCATTACTACAAGCTAGCCACAAGGTATTTCTCTCTCTTCCCTCTGAACCAGTAACCCCATCAACAACCAAACTTTGAGAGAGAAGATCGAATTAAGGATGGCAGTGTCTTCGACATGCATGCCTCACAGGGAGTTGATGCCAACATTAGTTAAATCCACAAATACTTCAACCCTTTTTTGGTTGAATAACAATACTAATAATAATGTTAATGTTAATGTTATTACCACTAATAATTATGTTACTCTTACAAGAAAGGCCCCCTGTTCGAGGTTTCTAGCAAGGAGCACTGAGGATGCTTCGGAGATGACGGCAACATCAACGGACCAGTCATGGGAAGGAGAAGGAGAAAACAGTCCAATGGAAATGCCTAAAGGACCTCCTTCTATCATCTCTGCCCTTAACGTTGAAAAGGCTCTTCGTGGCATTGGTACACCTTCATTTTTTGTTTGTCAATTTAATTGTTTTCGGTATGTGTGTACTCCCTCTGTCCCTTAATACTTGACCCAATTTGACTTTTCACACTATTTACATAATTTACTTTGCCCCTATTTTATTTATAATATATGAAAACAAATGTTAGTATATACTATATTGTTGACTTCATCTTAATATATATTTTTAAAATATTAATATTTTATAAGTTTTTATAATATGTAGTTAAAGTAATTGGTGATCAAAGTTGTGCATTGACAAACATGTGCGGTCAAAACAGATCGAGTATTAAGAGACGGATGGAGTATTGTTAAACTCAGAGATTAACGACCACCTAATATTTCATAAATGTCACCTCGAATTGCACAACTCTTTAAATTAATTAGCTCTACCGATTAGAGCTAGGATCACAGAAATGTAGAAGAATATGCCTGATAATTTGATAAAACCTTGTTTTAGAGTGGTGCAGGAATTACGGATGTGGACCATTATGCTAGGCTGGGACTTCGAAGAGGATGCACCTATGATCAGGTAAATAAGATCCGCTTAAAAGCGGACTACATGAAATTTTCACCATATAACCAACTTTATACTGTTTAGGGACAATTTTATTTTGCTGATTTGCTAAAGGAAACCAAAAATAGTTTTGCTTGTTTTTTTTTTTTTGGTGCGAATGAGCCACAAGGGCAATATAAATTACAAATGGGGGCGGGGGGATTCGAACCTGAGACCTANTTTTTTTTTTTTGGTGCGAATGAGCCACAAGGGCAATATAAATTACAAATGGGGGCGGGGGGATTCGAACCTGAGACCTATTGTACACAGGCCCTCAGTCTTAACCACTAGGCCAAGACATCATTGGTAAAAATAGTTTTGCTTGTAACTGCAAGGAACATTACTGCATTTGGTTATATACATAAAATTACCACTAACTACATTTCTAAAAATATGTTGTTTTGTTCAAACTATTCAAAGTTTCTTAATTATAGCTAACTTAATTTTCAAAAATGTAATTTCCATGTATACTTGAGCAGGTTGGAGCTGCATACGAGATTCAAGTCAAGGAATTATCCAGCCAAGGGATGGACGAGGAACAATTTAACAAAGAGCGTGATCTTCTTAAGGTGACACAAAATTGTACTCCCTTTGTCATATATTCCAAAATAATACAAGTTCTTGTAATAATTAATTGTAGAAGTGTCTTAAAGTATTTATGGGGCGTTTTCTTTGCCTTTAAAGAAAAAAGTTTCGGGTCTATTAAGTCAAATAAGTTCCGATATGATAAAATAAGTTAAGATAAATTATAAATTGGTTCAATAACTTTAGTCTCTTATAGTTAATCAGATCTAAAAAGTTTCTATTAGATCAATCAGGTATTCAGGTCCAATAAGTTCCACACATAAGTTGAAAATTTAATAATTTTGCCATATGACAGGATAACAAGCAAACTAAAAATATAAGTCAATAAATTTACAGGAATCGTACAATATATTATCTTCTGAACAAGAAAGAAGGTTATATGATTGGAGCTTGGCGAGGAACAGCGCACCTGAGAGATATATGTGGCCGTTCGAGGCCGACATAACACAAACTCCTAGATGGGGTACTCCTCCTCCACAGGTAAAGTCGTTGCAATTTTTATTTTTGTGTATGTTAGACGTTTTAACAAATACTTGCATGTATAATTATCTATTTTTAATGATCCAGTTGATTTCTTAATTTTCTCCAAATTAAGCTACTAAAACTGAAGATAATTTGTTACAGGAACCTGAAGATGTCGGACCTACAACAGCTGTGGGATATTTCCTATTAGCCTGGTTTGTATTCTCTTTCATATTATCCATTGCTCTCAACCGATAGAGCATCGTTACGTTACGTTACGTTGCTGTGCCGCGTACTCGCAAATGTCGATCTCTCCATTCAAATTTTATTCATCATTGCTGGAGTAGTAGTTTTGTAAATATGCTTATAATGCTTTGTGGAATTCCTAAATATATTAATTGAATAAATAAATTAATACGGAGTAGTTTATACTACTTCATAAATTCCTTCACATTAAACCTTTTATATATCCAAACTTAAATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGGACTTTTGTCACTATTCATATAATCTACTTTGACTATTCGTAGTGTTTTTTATATAAGATAAA

mRNA sequence

CTAGCATGTACGAACCACAAATTGTATGGACAAAATGAATCATTCGGAGATAGGCCATTACTACAAGCTAGCCACAAGGTATTTCTCTCTCTTCCCTCTGAACCAGTAACCCCATCAACAACCAAACTTTGAGAGAGAAGATCGAATTAAGGATGGCAGTGTCTTCGACATGCATGCCTCACAGGGAGTTGATGCCAACATTAGTTAAATCCACAAATACTTCAACCCTTTTTTGGTTGAATAACAATACTAATAATAATGTTAATGTTAATGTTATTACCACTAATAATTATGTTACTCTTACAAGAAAGGCCCCCTGTTCGAGGTTTCTAGCAAGGAGCACTGAGGATGCTTCGGAGATGACGGCAACATCAACGGACCAGTCATGGGAAGGAGAAGGAGAAAACAGTCCAATGGAAATGCCTAAAGGACCTCCTTCTATCATCTCTGCCCTTAACGTTGAAAAGGCTCTTCGTGGCATTGGAATTACGGATGTGGACCATTATGCTAGGCTGGGACTTCGAAGAGGATGCACCTATGATCAGGTTGGAGCTGCATACGAGATTCAAGTCAAGGAATTATCCAGCCAAGGGATGGACGAGGAACAATTTAACAAAGAGCGTGATCTTCTTAAGGAATCGTACAATATATTATCTTCTGAACAAGAAAGAAGGTTATATGATTGGAGCTTGGCGAGGAACAGCGCACCTGAGAGATATATGTGGCCGTTCGAGGCCGACATAACACAAACTCCTAGATGGGGTACTCCTCCTCCACAGGAACCTGAAGATGTCGGACCTACAACAGCTGTGGGATATTTCCTATTAGCCTGGTTTGTATTCTCTTTCATATTATCCATTGCTCTCAACCGATAGAGCATCGTTACGTTACGTTACGTTGCTGTGCCGCGTACTCGCAAATGTCGATCTCTCCATTCAAATTTTATTCATCATTGCTGGAGTAGTAGTTTTGTAAATATGCTTATAATGCTTTGTGGAATTCCTAAATATATTAATTGAATAAATAAATTAATACGGAGTAGTTTATACTACTTCATAAATTCCTTCACATTAAACCTTTTATATATCCAAACTTAAATACTTCCTCCGTCTTTTAATACTCGCAACGTTTGGACTTTTGTCACTATTCATATAATCTACTTTGACTATTCGTAGTGTTTTTTATATAAGATAAA

Coding sequence (CDS)

ATGGCAGTGTCTTCGACATGCATGCCTCACAGGGAGTTGATGCCAACATTAGTTAAATCCACAAATACTTCAACCCTTTTTTGGTTGAATAACAATACTAATAATAATGTTAATGTTAATGTTATTACCACTAATAATTATGTTACTCTTACAAGAAAGGCCCCCTGTTCGAGGTTTCTAGCAAGGAGCACTGAGGATGCTTCGGAGATGACGGCAACATCAACGGACCAGTCATGGGAAGGAGAAGGAGAAAACAGTCCAATGGAAATGCCTAAAGGACCTCCTTCTATCATCTCTGCCCTTAACGTTGAAAAGGCTCTTCGTGGCATTGGAATTACGGATGTGGACCATTATGCTAGGCTGGGACTTCGAAGAGGATGCACCTATGATCAGGTTGGAGCTGCATACGAGATTCAAGTCAAGGAATTATCCAGCCAAGGGATGGACGAGGAACAATTTAACAAAGAGCGTGATCTTCTTAAGGAATCGTACAATATATTATCTTCTGAACAAGAAAGAAGGTTATATGATTGGAGCTTGGCGAGGAACAGCGCACCTGAGAGATATATGTGGCCGTTCGAGGCCGACATAACACAAACTCCTAGATGGGGTACTCCTCCTCCACAGGAACCTGAAGATGTCGGACCTACAACAGCTGTGGGATATTTCCTATTAGCCTGGTTTGTATTCTCTTTCATATTATCCATTGCTCTCAACCGATAG

Protein sequence

MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFLARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19438.1	Spo19438.1	mRNA

Homology

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BLAST of Spo19438.1 vs. NCBI nr
Match: gi|902197564|gb|KNA13470.1| (hypothetical protein SOVF_116780 [Spinacia oleracea])

HSP 1 Score: 475.7 bits (1223), Expect = 4.700e-131
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 1

		  
Query: 1   MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFL 60
           MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFL
Sbjct: 1   MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFL 60

Query: 61  ARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYAR 120
           ARSTEDASEMTAT+TDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYAR
Sbjct: 61  ARSTEDASEMTATATDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYAR 120

Query: 121 LGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSL 180
           LGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSL
Sbjct: 121 LGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSL 180

Query: 181 ARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 240
           ARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR
Sbjct: 181 ARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 240

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BLAST of Spo19438.1 vs. NCBI nr
Match: gi|731317702|ref|XP_010669327.1| (PREDICTED: uncharacterized protein LOC104886572 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 355.5 bits (911), Expect = 7.200e-95
Identity = 186/245 (75.92%), Postives = 210/245 (85.71%), Query Frame = 1

		  
Query: 1   MAVSST--CMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSR 60
           MAVSST  CMPHRELMP+LVK TNT+ LF  NN  N N   N+I+TNNYVTLTRK  C R
Sbjct: 1   MAVSSTTACMPHRELMPSLVKPTNTTILF--NNLKNTNNTSNIISTNNYVTLTRKVTCGR 60

Query: 61  FLARSTEDASEMTATST----DQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITD 120
           F+A+S+EDASE TAT+T    D+SWEG+GE+SPMEMPKGPPS+ISALNVEKALRGI ITD
Sbjct: 61  FVAKSSEDASETTATTTTTTTDESWEGDGESSPMEMPKGPPSLISALNVEKALRGIAITD 120

Query: 121 VDHYARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERR 180
           VDHYAR+GLRRGC+YDQVG AY+I+V+ELSSQG+DEE+ NKER+LLKESYNILSSE ERR
Sbjct: 121 VDHYARMGLRRGCSYDQVGPAYQIKVQELSSQGLDEEELNKERELLKESYNILSSEVERR 180

Query: 181 LYDWSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFIL 240
           LYDWSLAR+ AP+RY WPFEADITQTP  G PPP+EPEDVGPT AVGYF L W V +F L
Sbjct: 181 LYDWSLARSGAPDRYAWPFEADITQTPT-GIPPPREPEDVGPTIAVGYFFLGWLVLAFTL 240

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BLAST of Spo19438.1 vs. NCBI nr
Match: gi|720018892|ref|XP_010261937.1| (PREDICTED: uncharacterized protein LOC104600594 [Nelumbo nucifera])

HSP 1 Score: 226.1 bits (575), Expect = 6.500e-56
Identity = 119/183 (65.03%), Postives = 137/183 (74.86%), Query Frame = 1

		  
Query: 58  RFLARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDH 117
           R L RS+ DAS    T+T    E E E S +E  K P S+ISALNVE+ LRGI ITD DH
Sbjct: 43  RCLIRSSSDASPEAETAT----ETESEESSVEASKVPYSLISALNVERVLRGIAITDADH 102

Query: 118 YARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYD 177
           Y RLGL+RGC YDQV  AY+ + +EL +QG+DEE+  K+ +LLKESY ILSSE+ERRLYD
Sbjct: 103 YGRLGLQRGCPYDQVAIAYKAKSEELMNQGLDEEELGKKLELLKESYLILSSEEERRLYD 162

Query: 178 WSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIA 237
           WSLAR+  PERY+WPFE DITQTP    PPPQEPEDVGPT  VGYFLL W + SF LSIA
Sbjct: 163 WSLARSEKPERYVWPFEVDITQTPT-QPPPPQEPEDVGPTRVVGYFLLGWLILSFTLSIA 220

Query: 238 LNR 241
           LNR
Sbjct: 223 LNR 220

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BLAST of Spo19438.1 vs. NCBI nr
Match: gi|823221345|ref|XP_012443363.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [Gossypium raimondii])

HSP 1 Score: 222.2 bits (565), Expect = 9.500e-55
Identity = 124/223 (55.61%), Postives = 150/223 (67.26%), Query Frame = 1

		  
Query: 18  VKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFLARSTEDASEMTATSTDQ 77
           + +T  +TL+   NN + +   N    +N           R   RS+ D S  T T+   
Sbjct: 3   LSTTAATTLYISGNNIHASTPKNASLFSNSTISFSAKQRRRLSIRSSGDVSSETPTT--- 62

Query: 78  SWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYARLGLRRGCTYDQVGAAYE 137
             E E E S  E PKGPPS+ISALNVE+ALRGI ITD DHY RLGL+RGC+Y+QV  AY 
Sbjct: 63  --ETESEKSIDEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRGCSYEQVTVAYR 122

Query: 138 IQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSLARNSAPERYMWPFEADI 197
            +V EL +QG+DEE+ +K+ DLLKESY+ILSS +ERRLYDWSLAR   P+RY WPFE DI
Sbjct: 123 NKVDELLNQGLDEEELSKKMDLLKESYSILSSVEERRLYDWSLARTEQPDRYAWPFEVDI 182

Query: 198 TQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 241
           TQTP    PPP EPEDVGPT AVGYF+L W + SF+LSIA  R
Sbjct: 183 TQTPT-EEPPPGEPEDVGPTRAVGYFMLGWLILSFVLSIAFAR 219

[Close]

BLAST of Spo19438.1 vs. NCBI nr
Match: gi|976915549|gb|KVI01473.1| (DnaJ domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 218.4 bits (555), Expect = 1.400e-53
Identity = 123/228 (53.95%), Postives = 161/228 (70.61%), Query Frame = 1

		  
Query: 14  MPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFLARSTEDASEMTAT 73
           M T   +T+ +   +L     ++++V    + NYV+  RK P  R+  RS+ D    ++ 
Sbjct: 1   MATSATTTSAAASTYL---CRHHLSVGRNCSRNYVSFARK-PTGRYSVRSSADEVPSSSA 60

Query: 74  STDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYARLGLRRGCTYDQVG 133
           +T +  EG  E S +E+PK P S+ISALNVEKALRGI ITD DHY  LGL++GC+YDQV 
Sbjct: 61  ATTEV-EGTTE-SQIEVPKEPSSLISALNVEKALRGIAITDADHYGILGLKKGCSYDQVK 120

Query: 134 AAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSLARNSAPERYMWPF 193
           +AY+ +++EL +QG+++E+ +K+ DLLKESY+ILSS QERRLYDWSLARN  P+RY WPF
Sbjct: 121 SAYDQKLEELMNQGLEQEELSKKLDLLKESYSILSSVQERRLYDWSLARNENPDRYAWPF 180

Query: 194 EADITQTPRW-GTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 241
           E DITQTP    TPPPQEPEDV PT  VGYF L W + S  LS+ALNR
Sbjct: 181 EVDITQTPNSPDTPPPQEPEDVEPTRLVGYFFLTWIILSITLSVALNR 222

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BLAST of Spo19438.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1T8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_116780 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 3.300e-131
Identity = 239/240 (99.58%), Postives = 240/240 (100.00%), Query Frame = 1

		  
Query: 1   MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFL 60
           MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFL
Sbjct: 1   MAVSSTCMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFL 60

Query: 61  ARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYAR 120
           ARSTEDASEMTAT+TDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYAR
Sbjct: 61  ARSTEDASEMTATATDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYAR 120

Query: 121 LGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSL 180
           LGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSL
Sbjct: 121 LGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSL 180

Query: 181 ARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 240
           ARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR
Sbjct: 181 ARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 240

[Close]

BLAST of Spo19438.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CVW6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g033980 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 5.000e-95
Identity = 186/245 (75.92%), Postives = 210/245 (85.71%), Query Frame = 1

		  
Query: 1   MAVSST--CMPHRELMPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSR 60
           MAVSST  CMPHRELMP+LVK TNT+ LF  NN  N N   N+I+TNNYVTLTRK  C R
Sbjct: 1   MAVSSTTACMPHRELMPSLVKPTNTTILF--NNLKNTNNTSNIISTNNYVTLTRKVTCGR 60

Query: 61  FLARSTEDASEMTATST----DQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITD 120
           F+A+S+EDASE TAT+T    D+SWEG+GE+SPMEMPKGPPS+ISALNVEKALRGI ITD
Sbjct: 61  FVAKSSEDASETTATTTTTTTDESWEGDGESSPMEMPKGPPSLISALNVEKALRGIAITD 120

Query: 121 VDHYARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERR 180
           VDHYAR+GLRRGC+YDQVG AY+I+V+ELSSQG+DEE+ NKER+LLKESYNILSSE ERR
Sbjct: 121 VDHYARMGLRRGCSYDQVGPAYQIKVQELSSQGLDEEELNKERELLKESYNILSSEVERR 180

Query: 181 LYDWSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFIL 240
           LYDWSLAR+ AP+RY WPFEADITQTP  G PPP+EPEDVGPT AVGYF L W V +F L
Sbjct: 181 LYDWSLARSGAPDRYAWPFEADITQTPT-GIPPPREPEDVGPTIAVGYFFLGWLVLAFTL 240

[Close]

BLAST of Spo19438.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RTT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G041100 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.600e-55
Identity = 124/223 (55.61%), Postives = 150/223 (67.26%), Query Frame = 1

		  
Query: 18  VKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFLARSTEDASEMTATSTDQ 77
           + +T  +TL+   NN + +   N    +N           R   RS+ D S  T T+   
Sbjct: 3   LSTTAATTLYISGNNIHASTPKNASLFSNSTISFSAKQRRRLSIRSSGDVSSETPTT--- 62

Query: 78  SWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYARLGLRRGCTYDQVGAAYE 137
             E E E S  E PKGPPS+ISALNVE+ALRGI ITD DHY RLGL+RGC+Y+QV  AY 
Sbjct: 63  --ETESEKSIDEAPKGPPSLISALNVERALRGIAITDADHYGRLGLQRGCSYEQVTVAYR 122

Query: 138 IQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSLARNSAPERYMWPFEADI 197
            +V EL +QG+DEE+ +K+ DLLKESY+ILSS +ERRLYDWSLAR   P+RY WPFE DI
Sbjct: 123 NKVDELLNQGLDEEELSKKMDLLKESYSILSSVEERRLYDWSLARTEQPDRYAWPFEVDI 182

Query: 198 TQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 241
           TQTP    PPP EPEDVGPT AVGYF+L W + SF+LSIA  R
Sbjct: 183 TQTPT-EEPPPGEPEDVGPTRAVGYFMLGWLILSFVLSIAFAR 219

[Close]

BLAST of Spo19438.1 vs. UniProtKB/TrEMBL
Match: A0A118K0K6_CYNCS (DnaJ domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_020255 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 9.500e-54
Identity = 123/228 (53.95%), Postives = 161/228 (70.61%), Query Frame = 1

		  
Query: 14  MPTLVKSTNTSTLFWLNNNTNNNVNVNVITTNNYVTLTRKAPCSRFLARSTEDASEMTAT 73
           M T   +T+ +   +L     ++++V    + NYV+  RK P  R+  RS+ D    ++ 
Sbjct: 1   MATSATTTSAAASTYL---CRHHLSVGRNCSRNYVSFARK-PTGRYSVRSSADEVPSSSA 60

Query: 74  STDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDHYARLGLRRGCTYDQVG 133
           +T +  EG  E S +E+PK P S+ISALNVEKALRGI ITD DHY  LGL++GC+YDQV 
Sbjct: 61  ATTEV-EGTTE-SQIEVPKEPSSLISALNVEKALRGIAITDADHYGILGLKKGCSYDQVK 120

Query: 134 AAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYDWSLARNSAPERYMWPF 193
           +AY+ +++EL +QG+++E+ +K+ DLLKESY+ILSS QERRLYDWSLARN  P+RY WPF
Sbjct: 121 SAYDQKLEELMNQGLEQEELSKKLDLLKESYSILSSVQERRLYDWSLARNENPDRYAWPF 180

Query: 194 EADITQTPRW-GTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIALNR 241
           E DITQTP    TPPPQEPEDV PT  VGYF L W + S  LS+ALNR
Sbjct: 181 EVDITQTPNSPDTPPPQEPEDVEPTRLVGYFFLTWIILSITLSVALNR 222

[Close]

BLAST of Spo19438.1 vs. UniProtKB/TrEMBL
Match: A0A061GKF9_THECC (Chaperone DnaJ-domain superfamily protein OS=Theobroma cacao GN=TCM_037372 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.200e-53
Identity = 115/183 (62.84%), Postives = 135/183 (73.77%), Query Frame = 1

		  
Query: 58  RFLARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDH 117
           R   RS+ D S  T  +     E E E S +E PKGPPS+ISALNVE+ALRGI ITD DH
Sbjct: 40  RLSIRSSGDVSSETPAT-----EAESEQS-IEAPKGPPSLISALNVERALRGIAITDADH 99

Query: 118 YARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYD 177
           Y RLGL+R C+Y+QV  AY+ +V EL  QG+DEE+ +K+ DLLKESY+ILSS +ERR+YD
Sbjct: 100 YGRLGLQRKCSYEQVTVAYKNKVDELPKQGLDEEELSKKMDLLKESYSILSSVKERRMYD 159

Query: 178 WSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIA 237
           WSLAR   P RY WPFE DITQTP    PPPQEPEDVGPT  VGYF+L WF+ S +LSIA
Sbjct: 160 WSLARTEEPGRYAWPFEEDITQTPT-QEPPPQEPEDVGPTRLVGYFILGWFILSVVLSIA 215

Query: 238 LNR 241
           L R
Sbjct: 220 LAR 215

[Close]

BLAST of Spo19438.1 vs. ExPASy Swiss-Prot
Match: NDHU_ARATH (NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana GN=ndhU PE=1 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 5.900e-49
Identity = 101/183 (55.19%), Postives = 127/183 (69.40%), Query Frame = 1

		  
Query: 58  RFLARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDH 117
           R +     ++SE++A   +   EG    +  E PK  PS+ISALNVE+ALRG+ ITDVDH
Sbjct: 40  RIICSPARNSSEVSA---EAETEGGSSTAVDEAPKESPSLISALNVERALRGLPITDVDH 99

Query: 118 YARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYD 177
           Y RLG+ R C+YDQV   Y+ +VKEL  QG+DEEQ   + DL+KESY ILS+ +ERR+YD
Sbjct: 100 YGRLGIFRNCSYDQVTIGYKERVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYD 159

Query: 178 WSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIA 237
           WSLAR+   ERY+WPFE DI + P    PPPQEPEDVGPT  +GYF+ AW V    LS+A
Sbjct: 160 WSLARSEKAERYVWPFEVDIME-PSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVA 218

Query: 238 LNR 241
            NR
Sbjct: 220 FNR 218

[Close]

BLAST of Spo19438.1 vs. TAIR (Arabidopsis)
Match: AT5G21430.1 (Chaperone DnaJ-domain superfamily protein)

HSP 1 Score: 195.7 bits (496), Expect = 3.300e-50
Identity = 101/183 (55.19%), Postives = 127/183 (69.40%), Query Frame = 1

		  
Query: 58  RFLARSTEDASEMTATSTDQSWEGEGENSPMEMPKGPPSIISALNVEKALRGIGITDVDH 117
           R +     ++SE++A   +   EG    +  E PK  PS+ISALNVE+ALRG+ ITDVDH
Sbjct: 40  RIICSPARNSSEVSA---EAETEGGSSTAVDEAPKESPSLISALNVERALRGLPITDVDH 99

Query: 118 YARLGLRRGCTYDQVGAAYEIQVKELSSQGMDEEQFNKERDLLKESYNILSSEQERRLYD 177
           Y RLG+ R C+YDQV   Y+ +VKEL  QG+DEEQ   + DL+KESY ILS+ +ERR+YD
Sbjct: 100 YGRLGIFRNCSYDQVTIGYKERVKELKEQGLDEEQLKTKMDLIKESYTILSTVEERRMYD 159

Query: 178 WSLARNSAPERYMWPFEADITQTPRWGTPPPQEPEDVGPTTAVGYFLLAWFVFSFILSIA 237
           WSLAR+   ERY+WPFE DI + P    PPPQEPEDVGPT  +GYF+ AW V    LS+A
Sbjct: 160 WSLARSEKAERYVWPFEVDIME-PSREEPPPQEPEDVGPTRILGYFIGAWLVLGVALSVA 218

Query: 238 LNR 241
            NR
Sbjct: 220 FNR 218

The following BLAST results are available for this feature:

BLAST of Spo19438.1 vs. NCBI nr
BLAST of Spo19438.1 vs. UniProtKB/TrEMBL
BLAST of Spo19438.1 vs. ExPASy Swiss-Prot
BLAST of Spo19438.1 vs. TAIR (Arabidopsis)

BLAST of Spo19438.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902197564\|gb\|KNA13470.1\|	4.7e-131	99.5	hypothetical protein SOVF_1167...	[more]
gi\|731317702\|ref\|XP_010669327.1\|	7.2e-95	75.9	PREDICTED: uncharacterized pro...	[more]
gi\|720018892\|ref\|XP_010261937.1\|	6.5e-56	65.0	PREDICTED: uncharacterized pro...	[more]
gi\|823221345\|ref\|XP_012443363.1\|	9.5e-55	55.6	PREDICTED: NAD(P)H-quinone oxi...	[more]
gi\|976915549\|gb\|KVI01473.1\|	1.4e-53	53.9	DnaJ domain-containing protein...	[more]

BLAST of Spo19438.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R1T8_SPIOL	3.3e-131	99.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8CVW6_BETVU	5.0e-95	75.9	Uncharacterized protein OS=Bet...	[more]
A0A0D2RTT7_GOSRA	6.6e-55	55.6	Uncharacterized protein OS=Gos...	[more]
A0A118K0K6_CYNCS	9.5e-54	53.9	DnaJ domain-containing protein...	[more]
A0A061GKF9_THECC	1.2e-53	62.8	Chaperone DnaJ-domain superfam...	[more]

BLAST of Spo19438.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
NDHU_ARATH	5.9e-49	55.1	NAD(P)H-quinone oxidoreductase...	[more]

BLAST of Spo19438.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G21430.1	3.3e-50	55.1	Chaperone DnaJ-domain superfam...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001623	DnaJ domain	GENE3D	1.10.287.110		coord: 114..177 score: 3.
IPR001623	DnaJ domain	unknown	SSF46565	Chaperone J-domain	coord: 114..180 score: 9.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006396	RNA processing
biological_process	GO:0006417	regulation of translation
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0006479	protein methylation
biological_process	GO:0042793	plastid transcription
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:1901918	negative regulation of exoribonuclease activity
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0030154	cell differentiation
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0009094	L-phenylalanine biosynthetic process
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0006571	tyrosine biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0050992	dimethylallyl diphosphate biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0046500	S-adenosylmethionine metabolic process
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009536	plastid
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031969	chloroplast membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0020037	heme binding
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004719	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004834	tryptophan synthase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0051745	4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo25800	0.79	Barchart \| Table
Spo03335	0.74	Barchart \| Table
Spo10471	0.74	Barchart \| Table
Spo05496	0.71	Barchart \| Table
Spo18357	0.69	Barchart \| Table
Spo26887	0.68	Barchart \| Table
Spo19812	0.68	Barchart \| Table
Spo21350	0.68	Barchart \| Table
Spo08654	0.68	Barchart \| Table
Spo08789	0.68	Barchart \| Table
Spo04615	0.67	Barchart \| Table
Spo11398	0.67	Barchart \| Table
Spo28146	0.66	Barchart \| Table
Spo04391	0.66	Barchart \| Table
Spo06972	0.66	Barchart \| Table
Spo08337	0.66	Barchart \| Table
Spo11577	0.66	Barchart \| Table
Spo23299	0.66	Barchart \| Table
Spo25803	0.66	Barchart \| Table
Spo02554	0.66	Barchart \| Table
Spo20345	0.65	Barchart \| Table
Spo05013	0.65	Barchart \| Table