Spo19531 (gene)

Overview
NameSpo19531
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionOrf108a
LocationSpoScf_22756 : 864 .. 1091 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCTTGCCCTTAGTTGGTTGGGGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAATACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGCCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA

mRNA sequence

GTGCTTGCCCTTAGTTGGTTGGGGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAATACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGCCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA

Coding sequence (CDS)

GTGCTTGCCCTTAGTTGGTTGGGGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAATACCCCACCGTGGTATGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGCCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA

Protein sequence

VLALSWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVIIGPMLRAKPIPRV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo19531.1Spo19531.1mRNA


Homology
[Close]
BLAST of Spo19531.1 vs. NCBI nr
Match: gi|586829792|gb|AHJ81032.1| (orf108a (mitochondrion) [Panax ginseng])

HSP 1 Score: 147.9 bits (372), Expect = 7.100e-33
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1 

		  

Query: 4  LSWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVII 63
          L WLGEEGISIAKDSIQPQVPLRLPCYDFTPVE PTVVCANKTTKSLCGTSGTQK WVII
Sbjct: 26 LCWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII 85

Query: 64 GPMLRAKPIPRV 76
          GPMLRAKPIPRV
Sbjct: 86 GPMLRAKPIPRV 97
[Close]
BLAST of Spo19531.1 vs. NCBI nr
Match: gi|1021021283|gb|KZM80272.1| (hypothetical protein DCAR_032051 [Daucus carota subsp. sativus])

HSP 1 Score: 142.1 bits (357), Expect = 3.900e-31
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 1 

		  

Query: 7  LGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVIIGPM 66
          LGEEGISIAKDSIQPQVPLRLPCYDFTPVE PTVVCANKTTKSLCGTSGTQK WVIIGPM
Sbjct: 27 LGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVIIGPM 86

Query: 67 LRAKPIPRV 76
          LRAKPIPRV
Sbjct: 87 LRAKPIPRV 95
[Close]
BLAST of Spo19531.1 vs. NCBI nr
Match: gi|57013913|ref|YP_173386.1| (hypothetical protein NitaMp040 [Nicotiana tabacum])

HSP 1 Score: 131.3 bits (329), Expect = 6.900e-28
Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 1 

		  

Query: 7   LGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVIIGPM 66
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVE PTVVCANKTTK LCGTS  QK WVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 67  LRAKPIPRV 76
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo19531.1 vs. NCBI nr
Match: gi|675895331|ref|YP_009049805.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 131.3 bits (329), Expect = 6.900e-28
Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 1 

		  

Query: 7   LGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVIIGPM 66
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVE PTVVCANKTTK LCGTS  QK WVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 67  LRAKPIPRV 76
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo19531.1 vs. NCBI nr
Match: gi|565487741|ref|XP_006301510.1| (hypothetical protein CARUB_v10021936mg, partial [Capsella rubella])

HSP 1 Score: 74.7 bits (182), Expect = 7.600e-11
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 1 

		  

Query: 13 SIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTS 55
          SI KDSIQPQVPL LPCY+FT VE P VVCANKT KSLCGTS
Sbjct: 31 SITKDSIQPQVPLWLPCYEFTRVEDPIVVCANKTIKSLCGTS 72
[Close]
BLAST of Spo19531.1 vs. UniProtKB/TrEMBL
Match: A0A096XFC7_PANGI (Orf108a OS=Panax ginseng GN=orf108a PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 4.900e-33
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1 

		  

Query: 4  LSWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVII 63
          L WLGEEGISIAKDSIQPQVPLRLPCYDFTPVE PTVVCANKTTKSLCGTSGTQK WVII
Sbjct: 26 LCWLGEEGISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKSLCGTSGTQKSWVII 85

Query: 64 GPMLRAKPIPRV 76
          GPMLRAKPIPRV
Sbjct: 86 GPMLRAKPIPRV 97
[Close]
BLAST of Spo19531.1 vs. UniProtKB/TrEMBL
Match: A0A075VTL5_CAPAN (Uncharacterized protein OS=Capsicum annuum GN=orf108e PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.800e-28
Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 1 

		  

Query: 7   LGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVIIGPM 66
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVE PTVVCANKTTK LCGTS  QK WVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 67  LRAKPIPRV 76
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo19531.1 vs. UniProtKB/TrEMBL
Match: Q5MA28_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf108 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.800e-28
Identity = 63/69 (91.30%), Postives = 63/69 (91.30%), Query Frame = 1 

		  

Query: 7   LGEEGISIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTSGTQKPWVIIGPM 66
           LGEE ISIAKDSIQPQVPLRLPCYDFTPVE PTVVCANKTTK LCGTS  QK WVIIGPM
Sbjct: 40  LGEECISIAKDSIQPQVPLRLPCYDFTPVEDPTVVCANKTTKGLCGTSVPQKSWVIIGPM 99

Query: 67  LRAKPIPRV 76
           LRAKPIPRV
Sbjct: 100 LRAKPIPRV 108
[Close]
BLAST of Spo19531.1 vs. UniProtKB/TrEMBL
Match: R0ICM9_9BRAS (Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10021936mg PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.300e-11
Identity = 35/42 (83.33%), Postives = 36/42 (85.71%), Query Frame = 1 

		  

Query: 13 SIAKDSIQPQVPLRLPCYDFTPVEYPTVVCANKTTKSLCGTS 55
          SI KDSIQPQVPL LPCY+FT VE P VVCANKT KSLCGTS
Sbjct: 31 SITKDSIQPQVPLWLPCYEFTRVEDPIVVCANKTIKSLCGTS 72
[Close]
BLAST of Spo19531.1 vs. UniProtKB/TrEMBL
Match: K3Z2I4_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_020752mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.900e-6
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 1 

		  

Query: 48 KSLCGTSGTQKPWVIIGPMLRAKPIPRV 76
          K LCGTSGTQK WVIIGPMLRAKPIPRV
Sbjct: 30 KGLCGTSGTQKSWVIIGPMLRAKPIPRV 57
The following BLAST results are available for this feature:
BLAST of Spo19531.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|586829792|gb|AHJ81032.1|7.1e-3395.8orf108a (mitochondrion) [Panax... [more]
gi|1021021283|gb|KZM80272.1|3.9e-3197.1hypothetical protein DCAR_0320... [more]
gi|57013913|ref|YP_173386.1|6.9e-2891.3hypothetical protein NitaMp040... [more]
gi|675895331|ref|YP_009049805.1|6.9e-2891.3hypothetical protein (mitochon... [more]
gi|565487741|ref|XP_006301510.1|7.6e-1183.3hypothetical protein CARUB_v10... [more]
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BLAST of Spo19531.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A096XFC7_PANGI4.9e-3395.8Orf108a OS=Panax ginseng GN=or... [more]
A0A075VTL5_CAPAN4.8e-2891.3Uncharacterized protein OS=Cap... [more]
Q5MA28_TOBAC4.8e-2891.3Uncharacterized protein OS=Nic... [more]
R0ICM9_9BRAS5.3e-1183.3Uncharacterized protein (Fragm... [more]
K3Z2I4_SETIT3.9e-692.8Uncharacterized protein OS=Set... [more]
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BLAST of Spo19531.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19531.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005739 mitochondrion
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo111250.81Barchart | Table