Spo19534 (gene) | SpinachBase

Overview


Name	Spo19534
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Hedgehog receptor, putative isoform 1
Location	SpoScf_06648 : 656 .. 3285 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAGCTCCAAATCAAGGCATACAAATCAGTTGTGTTCGATTAGCAAGTGTGACTCAAATTCTGTTCTAAATGAGGTAACATGTCAACTTAGGTCATTGGTAACACTTATATTTATCTTATTGGCTGGCATCTTCAGGAATAGCTTAAGCATGATTTTTATTGTGGCAGTTTCCTTAATTATTATTTGATACGAACTGCTTTTGTGAAATAAATTTTTTGAAATTGATGCATTATGATTTATGAGCACAATTATAAATGTTAATTCCTTTGTTATGAATGCATACCTTGATTCTTAAAGTGAATGGATGGAACCCCTCCCCCCCTGGCATTCCCTTTTATTTCTATCTGAACAGGAGAAAGCCCCCATCTCTTTATGTTGATGTTTTTGGGTTTTTGTTGTTCTTTCCGCATATTCTTAAATGTGTTGCTAATTGAAGTATCTAATCACTTCTATTGATATTTTTCATTATTGCATGAAGTGTCAAATAATTTCTATTAACATTCATCATTATGGCTAGTTTGGTTACAGCCTATATATATGTTTGGAGATCTGTTTTAAAAAGCATTTTTAGCCTAAGTCCAACCGCTGTGTCCAGCTTCCTGTATAATGTGCGTTTTCATAGATATTATGTTGATTTTGCATTAATGGATGCAGATATCAAGAGCATCTTTGACACCAGAATCTAGCTACATTGCTAAACCAGCAGCGTCATGGCTTGACGATTTTCTTGTGTGGTTATCACCTGAAGCTTTTGGTTGTTGCCGAAAGTTTGTGAATGAGAGTTATTGTCCTCCTGATGATCAGGTTGGTGTTTCTTTCTACCCCCTTGTACCCTCCCCCCCTCTCCAACGGCCACAAAAGTATCCAGTGTTGAGTTGAAATGATGATGTCAAGGGAATCTGACTGTCAGGTGTCAGCCAATTGGAGAATCTTTTGTCACAGAAATGGCTAAACATGATTCATAAAGTAAAGAGTGCATTGATCCACAAAGGAAAATGAGAAGATGAGACTTAAACTTGTAAAAAAAGCGTCAAAATGAGAGTAGACTGACCTCACATATCACAATACTGAAGTTGTCCCGCCATTTAGACTGCTCGAGTTCTTGGTGACAAACTGACAATGGAGATAGCATTTCTTAGTTAATTTTATGTTTTTTCACGTGGTTAAAATTATTTCAAGAATGCGATATGTTAGACTTTTTTTTTGGGTAAATGGCAACTGCTGGCTAACAGTGTGAATTAAACATCCCGATTGCATAAAAAAGAAACCAATAAACTTATGATGATTACGCGTTTACACATGTTGTGAACCTTTTGTTTGTACTTGATATGATTATCTTCATCAATTTGCTCACATTTCTGTTTAATGATCATTATCCGCCATTTACTCATTGAACTAATGGTTTTGCCACCCAGGAGTTCTTGGTAGATGTTACTTGTAGGAAGGATTTTGTCAATAGAATATATTCTTCTTGCAGAAGTCCATGTTATTAGTATTTATAATTAATCTGTCTGTTGATTTTTCTTTCCAGCCTCCTTGCTGTTCACCTGATGAAGGTCCTTGTGGTTATGGGGGAGTTTGTGAAGATTGTACAACAGTAATGATGTTCTTCTATATGCCTTAATAATTTTAAATTCCAATTTGTTTAGTAAGATTATTTGACATGTGCTAGTATCAATGTAACATGTAAAATATCGTGCAGTGCTTTCGCCATGCAGACCTGGACGGTGATCGCCCTTCTACTACACAGTTTAGAGAAAAGCTCCCGTGGTTCCTCGATGCGTTGCCTTCTGCTGATTGTGCTAAGGGCGGTCATGGAGCCTACACAACTAGTTTGGACTTGACTGGTCTATTACTATCTCTCTTCCTACTGACCTACTGAACTGTGTCCTCTCCTGTTGATTCTTGATATTCTCTTACAAACTCTAAGTTCCAGAACTGAAAATTTGTGTTCATGAAATCCCAAATCAGGTTATGAGAGTGGTGTTATAAAAGCCTCTGAGTTTCGGACATATCACACACCAGTCAACAAACAGGTTAGTTCATGTCTACAGGAAATAGAATAATCAGCTGTTTCTTGGCCTAATTTAGCATTTGTAATTACCAAGATCTCTAAAGCCATTTGGTTCCTTATCAATGACAGAGTGACTATGTCAACGCACTGCGTGCTGCCCGTGAATTTAGCTCAAAAATTTCTGACTCGCTGAAGGTATAGATTCAGTTATGTGTGTGTGTGTGTGTGTTTTCTTCTTTCCTCCCTAGGCTATAGTGACGTCCTCTTAATATAGAAAGCTTTATCTAAATTTATGTTGTTTTACCTGTTGATCATCGTTGATGGAGCTTTTTTTTAATTTTTTTTTAATTTTGTGTTTCTCATGGTATCAATGTCTATGTATGGCGACTTTGCAGATTGATGTCTTTCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCTAGCTATTGCCCTTGGTTAGTATTTCCACAGTGCTTCTTGAAGCGTTTGATTTTGTTATTTATATTAATTTGG

mRNA sequence

TGCAGCTCCAAATCAAGGCATACAAATCAGTTGTGTTCGATTAGCAAGTGTGACTCAAATTCTGTTCTAAATGAGATATCAAGAGCATCTTTGACACCAGAATCTAGCTACATTGCTAAACCAGCAGCGTCATGGCTTGACGATTTTCTTGTGTGGTTATCACCTGAAGCTTTTGGTTGTTGCCGAAAGTTTGTGAATGAGAGTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTTCACCTGATGAAGGTCCTTGTGGTTATGGGGGAGTTTGTGAAGATTGTACAACATGCTTTCGCCATGCAGACCTGGACGGTGATCGCCCTTCTACTACACAGTTTAGAGAAAAGCTCCCGTGGTTCCTCGATGCGTTGCCTTCTGCTGATTGTGCTAAGGGCGGTCATGGAGCCTACACAACTAGTTTGGACTTGACTGGTTATGAGAGTGGTGTTATAAAAGCCTCTGAGTTTCGGACATATCACACACCAGTCAACAAACAGAGTGACTATGTCAACGCACTGCGTGCTGCCCGTGAATTTAGCTCAAAAATTTCTGACTCGCTGAAGATTGATGTCTTTCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCTAGCTATTGCCCTTGGTTAGTATTTCCACAGTGCTTCTTGAAGCGTTTGATTTTGTTATTTATATTAATTTGG

Coding sequence (CDS)

TGCAGCTCCAAATCAAGGCATACAAATCAGTTGTGTTCGATTAGCAAGTGTGACTCAAATTCTGTTCTAAATGAGATATCAAGAGCATCTTTGACACCAGAATCTAGCTACATTGCTAAACCAGCAGCGTCATGGCTTGACGATTTTCTTGTGTGGTTATCACCTGAAGCTTTTGGTTGTTGCCGAAAGTTTGTGAATGAGAGTTATTGTCCTCCTGATGATCAGCCTCCTTGCTGTTCACCTGATGAAGGTCCTTGTGGTTATGGGGGAGTTTGTGAAGATTGTACAACATGCTTTCGCCATGCAGACCTGGACGGTGATCGCCCTTCTACTACACAGTTTAGAGAAAAGCTCCCGTGGTTCCTCGATGCGTTGCCTTCTGCTGATTGTGCTAAGGGCGGTCATGGAGCCTACACAACTAGTTTGGACTTGACTGGTTATGAGAGTGGTGTTATAAAAGCCTCTGAGTTTCGGACATATCACACACCAGTCAACAAACAGAGTGACTATGTCAACGCACTGCGTGCTGCCCGTGAATTTAGCTCAAAAATTTCTGACTCGCTGAAGATTGATGTCTTTCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCCCATATTCGGTCTTCTATATATTTTTCGAGCAGTATTTGGACATTTGGACAACTGCTCTGATCAACCTAGCTATTGCCCTTGGTTAGTATTTCCACAGTGCTTCTTGAAGCGTTTGATTTTGTTATTTATATTAATTTGG

Protein sequence

CSSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIFRAVFGHLDNCSDQPSYCPWLVFPQCFLKRLILLFILIW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19534.1	Spo19534.1	mRNA

Homology

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|902193296|gb|KNA12261.1| (hypothetical protein SOVF_127560 [Spinacia oleracea])

HSP 1 Score: 452.2 bits (1162), Expect = 6.100e-124
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 900  SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 959

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF
Sbjct: 960  RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 1019

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS
Sbjct: 1020 LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 1079

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALIN    L  +F
Sbjct: 1080 SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINLAIALGAVF 1122

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|731357470|ref|XP_010690227.1| (PREDICTED: Niemann-Pick C1 protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 427.2 bits (1097), Expect = 2.100e-116
Identity = 200/223 (89.69%), Postives = 210/223 (94.17%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKS+HTNQLCSISKCDSNS+LNEISRAS TPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 897  SSKSKHTNQLCSISKCDSNSLLNEISRASTTPESSYIAKPAASWLDDFLVWLSPEAFGCC 956

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVN SYCPPDDQPPCCSPDEGPCGYGGVC DCTTCFRH DLD DRPST QFREKLPWF
Sbjct: 957  RKFVNGSYCPPDDQPPCCSPDEGPCGYGGVCGDCTTCFRHTDLDNDRPSTAQFREKLPWF 1016

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYTTSLDLTGYE+G+I+ASEFRTYHTPVN+QSDYVNALRAAREFS
Sbjct: 1017 LNALPSADCAKGGHGAYTTSLDLTGYENGIIRASEFRTYHTPVNRQSDYVNALRAAREFS 1076

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  +F
Sbjct: 1077 SKISDSLKMDIFPYSVFYIFFEQYLDIWRTALINLAIALGAVF 1119

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|645260738|ref|XP_008235959.1| (PREDICTED: Niemann-Pick C1 protein isoform X2 [Prunus mume])

HSP 1 Score: 407.1 bits (1045), Expect = 2.300e-110
Identity = 189/223 (84.75%), Postives = 208/223 (93.27%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 910  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 969

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFREKLPWF
Sbjct: 970  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFREKLPWF 1029

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 1030 LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1089

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1090 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1132

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|645260736|ref|XP_008235957.1| (PREDICTED: Niemann-Pick C1 protein isoform X1 [Prunus mume])

HSP 1 Score: 407.1 bits (1045), Expect = 2.300e-110
Identity = 189/223 (84.75%), Postives = 208/223 (93.27%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 912  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 971

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFREKLPWF
Sbjct: 972  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFREKLPWF 1031

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 1032 LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1091

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1092 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1134

[Close]

BLAST of Spo19534.1 vs. NCBI nr
Match: gi|595796963|ref|XP_007201221.1| (hypothetical protein PRUPE_ppa000346mg [Prunus persica])

HSP 1 Score: 406.0 bits (1042), Expect = 5.000e-110
Identity = 188/223 (84.30%), Postives = 208/223 (93.27%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 879  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 938

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFR+KLPWF
Sbjct: 939  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFRDKLPWF 998

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 999  LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1058

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1059 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1101

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0E9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_127560 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 4.300e-124
Identity = 216/223 (96.86%), Postives = 217/223 (97.31%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 900  SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 959

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF
Sbjct: 960  RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 1019

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS
Sbjct: 1020 LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 1079

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALIN    L  +F
Sbjct: 1080 SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINLAIALGAVF 1122

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EE39_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212490 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 1.500e-116
Identity = 200/223 (89.69%), Postives = 210/223 (94.17%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SSKS+HTNQLCSISKCDSNS+LNEISRAS TPESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 897  SSKSKHTNQLCSISKCDSNSLLNEISRASTTPESSYIAKPAASWLDDFLVWLSPEAFGCC 956

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKFVN SYCPPDDQPPCCSPDEGPCGYGGVC DCTTCFRH DLD DRPST QFREKLPWF
Sbjct: 957  RKFVNGSYCPPDDQPPCCSPDEGPCGYGGVCGDCTTCFRHTDLDNDRPSTAQFREKLPWF 1016

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYTTSLDLTGYE+G+I+ASEFRTYHTPVN+QSDYVNALRAAREFS
Sbjct: 1017 LNALPSADCAKGGHGAYTTSLDLTGYENGIIRASEFRTYHTPVNRQSDYVNALRAAREFS 1076

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            SKISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  +F
Sbjct: 1077 SKISDSLKMDIFPYSVFYIFFEQYLDIWRTALINLAIALGAVF 1119

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: M5W6J9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000346mg PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 3.500e-110
Identity = 188/223 (84.30%), Postives = 208/223 (93.27%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHT+QLCSIS+CDSNS+LNEISRASLTPESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 879  SSESRHTDQLCSISQCDSNSLLNEISRASLTPESSYIAKPAASWLDDFLVWISPEAFGCC 938

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RK++N SYCPPDDQPPCCSPD+GPCG GGVC+DCTTCFRH+DL  DRPSTTQFR+KLPWF
Sbjct: 939  RKYLNGSYCPPDDQPPCCSPDDGPCGVGGVCKDCTTCFRHSDLVNDRPSTTQFRDKLPWF 998

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GY SGVI+ASEFRTYHTP+NKQ DYVN+LRAAR+FS
Sbjct: 999  LNALPSADCAKGGHGAYTNSVDLNGYGSGVIRASEFRTYHTPLNKQGDYVNSLRAARDFS 1058

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLK+D+FPYSVFYIFFEQYLDIW TALIN    L  IF
Sbjct: 1059 SRISDSLKMDIFPYSVFYIFFEQYLDIWRTALINIAIALGAIF 1101

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: B9HPX9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s16840g PE=4 SV=2)

HSP 1 Score: 402.9 bits (1034), Expect = 3.000e-109
Identity = 188/223 (84.30%), Postives = 205/223 (91.93%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            S +SRHTNQLCSIS+CDSNS+LNE+SRASL PESSYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 880  SLESRHTNQLCSISQCDSNSLLNEVSRASLVPESSYIAKPAASWLDDFLVWLSPEAFGCC 939

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKF+N +YCPPDDQPPCCSPDE  CG+GGVC+DCTTCFRH+DL  DRPST QFREKLPWF
Sbjct: 940  RKFMNGTYCPPDDQPPCCSPDEFSCGFGGVCKDCTTCFRHSDLVNDRPSTVQFREKLPWF 999

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            LDALPS+DCAKGGHGAYT+S+DL GYE+GVI+ASEFRTYHTPVNKQ DYVNALRAAREFS
Sbjct: 1000 LDALPSSDCAKGGHGAYTSSVDLNGYENGVIRASEFRTYHTPVNKQGDYVNALRAAREFS 1059

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+ISDSLKI++FPYSVFYIFFEQYLDIW  ALIN    L  IF
Sbjct: 1060 SRISDSLKIEIFPYSVFYIFFEQYLDIWRIALINIAIALGAIF 1102

[Close]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Match: B9SMD3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0512970 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 6.600e-109
Identity = 189/223 (84.75%), Postives = 203/223 (91.03%), Query Frame = 1

		  
Query: 2   SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
           S +SRHTNQLCSIS+CDSNS+LNEISRA+  PESSYIAKPAASWLDDFLVW+SPEAFGCC
Sbjct: 201 SLESRHTNQLCSISQCDSNSLLNEISRAASVPESSYIAKPAASWLDDFLVWISPEAFGCC 260

Query: 62  RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
           RKF+N +YCPPDDQPPCCSPDEG CG GGVC+DCTTCFRH+DL  DRPST QFREKLPWF
Sbjct: 261 RKFLNGTYCPPDDQPPCCSPDEGTCGVGGVCKDCTTCFRHSDLVNDRPSTVQFREKLPWF 320

Query: 122 LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
           L+ALPSADCAKGGHGAYT S+DL GYESGVI+ASEFRTYHTPVNKQSDYVNAL+AAREFS
Sbjct: 321 LNALPSADCAKGGHGAYTNSVDLNGYESGVIRASEFRTYHTPVNKQSDYVNALQAAREFS 380

Query: 182 SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
           S ISDSLKID+FPYSVFYIFFEQYLDIW  ALIN    L  IF
Sbjct: 381 SSISDSLKIDIFPYSVFYIFFEQYLDIWRIALINIAIALGAIF 423

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPCL1_MOUSE (Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.000e-29
Identity = 81/232 (34.91%), Postives = 118/232 (50.86%), Query Frame = 1

		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFV--- 68
            N +CS + C+S S+  +I  AS  P  SY+A  A+SW+DDF+ WL+P +  CCR +    
Sbjct: 917  NAICSSAGCESFSLTQKIQYASEFPNQSYVAIAASSWVDDFIDWLTPSS-SCCRIYTRGP 976

Query: 69   -NESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDA 128
              + +CP  D                   +C     +  L   RP+T QF + LPWFL+ 
Sbjct: 977  HKDEFCPSTD----------------TSFNCLKNCMNRTLGPVRPTTEQFHKYLPWFLND 1036

Query: 129  LPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKI 188
             P+  C KGG  AY TS++L+    G I AS+F  YH P+    D+  ALRA+R  ++ I
Sbjct: 1037 TPNIRCPKGGLAAYRTSVNLS--SDGQIIASQFMAYHKPLRNSQDFTEALRASRLLAANI 1096

Query: 189  SDSLK--------IDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIFRAVF 229
            +  L+         +VFPY++  +F++QYL    T L   IF L   F   F
Sbjct: 1097 TAELRKVPGTDPNFEVFPYTISNVFYQQYL----TVLPEGIFTLALCFVPTF 1125

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPCL1_RAT (Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.400e-29
Identity = 83/245 (33.88%), Postives = 124/245 (50.61%), Query Frame = 1

		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFV--- 68
            N  CS + C S S+  +I  AS  P+ SY+A  A+SW+DDF+ WL+P +  CCR ++   
Sbjct: 917  NATCSSAGCKSFSLTQKIQYASEFPDQSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRGP 976

Query: 69   -NESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDA 128
              + +CP  D                   +C     +  L   RP+  QF + LPWFL+ 
Sbjct: 977  HKDEFCPSTD----------------TSFNCLKNCMNRTLGPVRPTAEQFHKYLPWFLND 1036

Query: 129  LPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKI 188
             P+  C KGG  AY TS++L+    G + AS+F  YH P+    D+  ALRA+R  ++ I
Sbjct: 1037 PPNIRCPKGGLAAYRTSVNLS--SDGQVIASQFMAYHKPLRNSQDFTEALRASRLLAANI 1096

Query: 189  SDSLK--------IDVFPYSVFYIFFEQYL-----DIWTTAL-INPIFGLLYIFRAVFGH 236
            +  L+         +VFPY++  +F++QYL      I+T AL   P F + Y+       
Sbjct: 1097 TADLRKVPGTDPNFEVFPYTISNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLG---- 1138

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPCL1_HUMAN (Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.800e-27
Identity = 81/237 (34.18%), Postives = 115/237 (48.52%), Query Frame = 1

		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFVN-- 68
            N +CS + C++ S   +I  A+  PE SY+A PA+SW+DDF+ WL+P +  CCR +++  
Sbjct: 917  NAICSSAGCNNFSFTQKIQYATEFPEQSYLAIPASSWVDDFIDWLTPSS--CCRLYISGP 976

Query: 69   --ESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDA 128
              + +CP       C  +      G V                RPS  QF + LPWFL+ 
Sbjct: 977  NKDKFCPSTVNSLNCLKNCMSITMGSV----------------RPSVEQFHKYLPWFLND 1036

Query: 129  LPSADCAKGGHGAYTTSLDLTG---------------YESGVIKA----------SEFRT 188
             P+  C KGG  AY+TS++LT                  SG I A          S F  
Sbjct: 1037 RPNIKCPKGGLAAYSTSVNLTSDGQVLDTVAILSPRLEYSGTISAHCNLYLLDSTSRFMA 1096

Query: 189  YHTPVNKQSDYVNALRAAREFSSKISDSLK--------IDVFPYSVFYIFFEQYLDI 209
            YH P+    DY  ALRAARE ++ I+  L+         +VFPY++  +F+EQYL I
Sbjct: 1097 YHKPLKNSQDYTEALRAARELAANITADLRKVPGTDPAFEVFPYTITNVFYEQYLTI 1135

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPC1_MOUSE (Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 6.500e-25
Identity = 71/228 (31.14%), Postives = 114/228 (50.00%), Query Frame = 1

		  
Query: 3    SKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCR 62
            S  +  N +C    CD++S++ +I  A+     + +    +SW+DD+  W+SP++  CCR
Sbjct: 900  SSRKGQNMVCGGMGCDNDSLVQQIFNAAELDTYTRVGFAPSSWIDDYFDWVSPQS-SCCR 959

Query: 63   KF-VNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 122
             + V   +C      P C                  C         RP   +F + LP F
Sbjct: 960  LYNVTHQFCNASVMDPTC----------------VRCRPLTPEGKQRPQGKEFMKFLPMF 1019

Query: 123  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 182
            L   P+  C KGGH AY +++++ G ++  I A+ F TYHT +   +DY +A++ AR  +
Sbjct: 1020 LSDNPNPKCGKGGHAAYGSAVNIVGDDT-YIGATYFMTYHTILKTSADYTDAMKKARLIA 1079

Query: 183  SKISDSLK-----IDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S I+++++       VFPYSVFY+F+EQYL I    + N    L  IF
Sbjct: 1080 SNITETMRSKGSDYRVFPYSVFYVFYEQYLTIIDDTIFNLSVSLGSIF 1109

[Close]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Match: NPC1_PIG (Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.200e-24
Identity = 70/225 (31.11%), Postives = 114/225 (50.67%), Query Frame = 1

		  
Query: 9    NQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCCRKFVNES 68
            N +C    C+++S++ +I  A+     + I    +SW+DD+  W+ P++  CCR +    
Sbjct: 906  NMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSWIDDYFDWIKPQS-SCCRVY---- 965

Query: 69   YCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWFLDALPSA 128
                       +  +  C    V   C  C         RP    F   LP FL   P+ 
Sbjct: 966  -----------NSTDQFCNASVVDPTCIRCRPLTSEGKQRPQGEDFMRFLPMFLSDNPNP 1025

Query: 129  DCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFSSKISDSL 188
             C KGGH AY++++++ G  SGV  A+ F TYHT +   +D+++A++ AR  +S I+ ++
Sbjct: 1026 KCGKGGHAAYSSAVNILGNGSGV-GATYFMTYHTVLQASADFIDAMQKARLIASNITRTM 1085

Query: 189  KID-----VFPYSVFYIFFEQYLDIWTTALINPIFGLLYIFRAVF 229
             ++     VFPYSVFY+F+EQYL    T + + IF L     A+F
Sbjct: 1086 GLEASSYRVFPYSVFYVFYEQYL----TVIDDTIFNLGVSLGAIF 1109

[Close]

BLAST of Spo19534.1 vs. TAIR (Arabidopsis)
Match: AT4G38350.2 (Patched family protein)

HSP 1 Score: 376.7 bits (966), Expect = 1.200e-104
Identity = 177/223 (79.37%), Postives = 197/223 (88.34%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHTNQLCSIS+C+SNS+LNEISRAS   ++SYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 913  SSESRHTNQLCSISQCNSNSLLNEISRASQASDTSYIAKPAASWLDDFLVWLSPEAFGCC 972

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKF N SYCPPDDQPPCC+ +E  C   G+C+DCTTCFRH+DL  DRPST QFREKLPWF
Sbjct: 973  RKFTNGSYCPPDDQPPCCTAEEDICSLDGICKDCTTCFRHSDLVQDRPSTAQFREKLPWF 1032

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAYT S+DL GYESGVI+ASEFRTYHTP+N Q DYVNALRAAREFS
Sbjct: 1033 LNALPSADCAKGGHGAYTNSVDLKGYESGVIQASEFRTYHTPLNTQGDYVNALRAAREFS 1092

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            S+IS+SLKID+FPYSVFYIFFEQYL+IWT AL N    +  IF
Sbjct: 1093 SRISNSLKIDIFPYSVFYIFFEQYLNIWTVALTNLAIAIGAIF 1135

[Close]

BLAST of Spo19534.1 vs. TAIR (Arabidopsis)
Match: AT1G42470.1 (Patched family protein)

HSP 1 Score: 369.8 bits (948), Expect = 1.400e-102
Identity = 167/223 (74.89%), Postives = 198/223 (88.79%), Query Frame = 1

		  
Query: 2    SSKSRHTNQLCSISKCDSNSVLNEISRASLTPESSYIAKPAASWLDDFLVWLSPEAFGCC 61
            SS+SRHTNQLCSI+KC+ NS+LNEI+RASLTPE SYIAKPAASWLDDFLVWLSPEAFGCC
Sbjct: 878  SSESRHTNQLCSINKCNPNSLLNEIARASLTPELSYIAKPAASWLDDFLVWLSPEAFGCC 937

Query: 62   RKFVNESYCPPDDQPPCCSPDEGPCGYGGVCEDCTTCFRHADLDGDRPSTTQFREKLPWF 121
            RKF N ++CPPDDQPPCC P +  CG   VC+DCTTCFRHADL  DRPSTTQF+EKLPWF
Sbjct: 938  RKFTNGTFCPPDDQPPCCPPGQTSCGLSEVCKDCTTCFRHADLSSDRPSTTQFKEKLPWF 997

Query: 122  LDALPSADCAKGGHGAYTTSLDLTGYESGVIKASEFRTYHTPVNKQSDYVNALRAAREFS 181
            L+ALPSADCAKGGHGAY++S+DL GY +G+I+AS FRTYHTP+NKQ D+VN++RAA+EFS
Sbjct: 998  LNALPSADCAKGGHGAYSSSVDLQGYANGIIQASSFRTYHTPLNKQVDFVNSMRAAQEFS 1057

Query: 182  SKISDSLKIDVFPYSVFYIFFEQYLDIWTTALINPIFGLLYIF 225
            +K+S SLK++++PYSVFY+FFEQYLDIW TALIN    +  +F
Sbjct: 1058 AKVSRSLKMEIYPYSVFYMFFEQYLDIWKTALINLSIAIAAVF 1100

The following BLAST results are available for this feature:

BLAST of Spo19534.1 vs. NCBI nr
BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
BLAST of Spo19534.1 vs. TAIR (Arabidopsis)

BLAST of Spo19534.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902193296\|gb\|KNA12261.1\|	6.1e-124	96.8	hypothetical protein SOVF_1275...	[more]
gi\|731357470\|ref\|XP_010690227.1\|	2.1e-116	89.6	PREDICTED: Niemann-Pick C1 pro...	[more]
gi\|645260738\|ref\|XP_008235959.1\|	2.3e-110	84.7	PREDICTED: Niemann-Pick C1 pro...	[more]
gi\|645260736\|ref\|XP_008235957.1\|	2.3e-110	84.7	PREDICTED: Niemann-Pick C1 pro...	[more]
gi\|595796963\|ref\|XP_007201221.1\|	5.0e-110	84.3	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo19534.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9R0E9_SPIOL	4.3e-124	96.8	Uncharacterized protein OS=Spi...	[more]
A0A0J8EE39_BETVU	1.5e-116	89.6	Uncharacterized protein OS=Bet...	[more]
M5W6J9_PRUPE	3.5e-110	84.3	Uncharacterized protein OS=Pru...	[more]
B9HPX9_POPTR	3.0e-109	84.3	Uncharacterized protein OS=Pop...	[more]
B9SMD3_RICCO	6.6e-109	84.7	Putative uncharacterized prote...	[more]

BLAST of Spo19534.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
NPCL1_MOUSE	2.0e-29	34.9	Niemann-Pick C1-like protein 1...	[more]
NPCL1_RAT	7.4e-29	33.8	Niemann-Pick C1-like protein 1...	[more]
NPCL1_HUMAN	1.8e-27	34.1	Niemann-Pick C1-like protein 1...	[more]
NPC1_MOUSE	6.5e-25	31.1	Niemann-Pick C1 protein OS=Mus...	[more]
NPC1_PIG	4.2e-24	31.1	Niemann-Pick C1 protein OS=Sus...	[more]

BLAST of Spo19534.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT4G38350.2	1.2e-104	79.3	Patched family protein	[more]
AT1G42470.1	1.4e-102	74.8	Patched family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10796	PATCHED-RELATED	coord: 2..215 score: 1.3E
None	No IPR available	PANTHER	PTHR10796:SF117	PATCHED FAMILY PROTEIN	coord: 2..215 score: 1.3E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030301	cholesterol transport
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008158	hedgehog receptor activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21940	0.71	Barchart \| Table