Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAATTGCTAATACTCAATTGTTCTCTTCACTTTTGTGTATCAATCATTATGTCAATCTTGATGCAAATTAAGGTTTTTTTTTGTTATGAAAGTCATATTCTGTATGAAAATGAGACTCTGGTATTAGTTCTTAAACAAGTGATTGCTCTATACTACAATTGCTGATATCCTTCTTCATGATTAGATAATCTAGTCAAATTCAGTTTCTTACAATTGCAATTGCCTGTAATTAGATACAGATTGTTTTTAGGAAGTATGATCACATGAAAAGCTTGAGAAGACAGCTATGCTTTGGAACATGACTATGCAGTAGATGAATGATACAGTTTTGAGGATGAGAAGATTACGTGATTAGGACGTGTCCTTTATTTTTGTAGGTCTCCCATGGCTAGTTCTTGCTTTCATTGCCTCAGACGGGCTGCTAGGTTCTCTGTGTCACTATTCAATACTTCCCAATTGGATTTTCTTTCTCCTAGGTACTCTCTCCTTCTTTACGCCCTTATTTTTAAAAGGCATCACTCACTAATATCCTTATTTTCTAACCTCTTTCTTTTCCTTCCAGGTTGACTTCGTATAATCCTGGAACCCTTTGGGGAATTTGCAGACCATTGTGTTTTCCATACACATCAGAACCCTGTTTAGTGTCCCGGAATTTCAGTTATGGCACAGTGAACTTGGTTATTTCTCAGGGGAAACCCAAATTTGAAGTCCAAGAAGTTGATCCTCCAAAGAAAGACAAGTGGAAGACGAAGAAGAGGCTCAAGATGCAGAGGTTGAGAGAGAAAAAAGAGAGGAAAGCAGCAAATAGAAGAGATCCACGGCGTCTCACTGTTAAGAGGAAGAAGCAAAAGTTTGCTAGTGTTGAGGATAGGATCAAAGACAAGCTCGAAAGGGTATCTTTTTTATCCTTGAGTATTGCATACTAAGTTCTGCGAATGTCTTTCTAGTTCTTTTTCTGTATGATTTTGTTGAATGTGCATCTTTTGTATAAAAAAATTCTGTCTTTCCTGATTCATTCATTTTTAGGTGTCTAATATCCTACAGTGGCTACAGATTATTGGTTGAATTGCCGATGCTTACTTTACATAGATTTGTAAGTTCAACCACTAACTAATGGCCTATATTCTATATCCACTAACTGTTGTTTAGGAAATTTACAAAAAGTTTGAGCCCTCATCTAGAGATTCCACCTTAGATAGGGAAGCCAGAGCCATTCCATCCAGATTGGTACCACTGCTCTAATGCTTAGGAACTTTTTGTTCTATTATTCTCGTGATTGTGAATTTTAGGTTGATTCCTTTTGTTTAATTTCATGGAATGATTTACAAAGATGATTGATTCTTTCAATTGAGCTTTGTTATATAAAAATTCCCCTTATCTTGCACCAAGCAAAGTCCCACATATACTTTTCTATATTTAAAGACACATTATTTACTTCCTCCACCCTAAAATTAAGTTCCTCTGGACCTTTTGCATGGAATGATTACCCATATGAGAACATTATTCCCGTATACCTAGACTATAAGCATGTATTAATGTATTATTCCAAACTACTCTGTACTAATTATTGAAGGAACGGATTTAAAAATGCATATATACCCAGGCCTTACTGCCTTCAGAAAGAAAGTAGTACCTTATTTGATGTTTAGGCAGGACAAGCTAATATTGGGCATTGACAGTTATTTTTCGCCATACCTTACAGGCAAGAATCAAAGAGGCTTTATTGGTTGAGCGCCTCAAAAAGTATGAAGTTCCAAAGGTTCAGGGTCCTGTTGTTCGACCACACAAGATAAATGGTGAGGAGAAGTTTTATTTCAAGAAGATGGCCCAGAAAAGGTCTAATTATGTTCCAGTTGGAAGAAGAGGTGTTTTTGGTGGTGTCATTCTCAACATGCATATGCACTGGAAGAAACATGAAACCGTGAAAGTCTTCTTTAAGCCTTGTAAACCAGGCCAAATACATGAATATGTGCAAGAAATAGAACGATTGAGTGGTGGTATAGCAATACAAATAATCGGAGATGACACCTCTATATTCTATAGAGGAAAGAACTATGTGCAACCGGAAATCATGTCACCCATTGATACACTGTCCAAGAAAAGGGTATGTTATCTCAAACGCACATATTTTACGTGTTCTCAAAAATCAAATTCATAGAAAGAAGTATCTTTTTCTAGGTATGTCCCTTTTATGCCATTTAATTCGGTAGGTTCAATTTTTCTGTGTTTTTCTGTTGCTAGGCCTTGGAGAAATCCAAGTATGAGCAATCACTGGAAACTGTGAGGCATTTCATTGCTGTTGCTGAAAAGGAATTGGAGCTTTATTACAGGCATATAGCACTGTATGGTATTTCAAACAAGCAGACATGTAGTACAATTGCTCAAAATTCAATAGAAGACTCAAATGATACTGTAAATCGTCATTTCACAAAAAGCAAAATTCTTGAGTCAACCCTCTATTCTACATGCGATCCTCAAATGGATTATGATTCCTCGGATCAAGAATTAAATGGTACTGGAAATGTGTCTTCCAGTGAGACAGAGCTAGATGGTGACTGCATGTCTGATGATGAAGACGATCTGGATTCTGAAGGGAGAGAGGAAGCTTTACCAAAATTAACGTAA ATGGGAATTGCTAATACTCAATTGTTCTCTTCACTTTTGTTGACTTCGTATAATCCTGGAACCCTTTGGGGAATTTGCAGACCATTGTGTTTTCCATACACATCAGAACCCTGTTTAGTGTCCCGGAATTTCAGTTATGGCACAGTGAACTTGGTTATTTCTCAGGGGAAACCCAAATTTGAAGTCCAAGAAGTTGATCCTCCAAAGAAAGACAAGTGGAAGACGAAGAAGAGGCTCAAGATGCAGAGGTTGAGAGAGAAAAAAGAGAGGAAAGCAGCAAATAGAAGAGATCCACGGCGTCTCACTGTTAAGAGGAAGAAGCAAAAGTTTGCTAGTGTTGAGGATAGGATCAAAGACAAGCTCGAAAGGGCAAGAATCAAAGAGGCTTTATTGGTTGAGCGCCTCAAAAAGTATGAAGTTCCAAAGGTTCAGGGTCCTGTTGTTCGACCACACAAGATAAATGGTGAGGAGAAGTTTTATTTCAAGAAGATGGCCCAGAAAAGGTCTAATTATGTTCCAGTTGGAAGAAGAGGTGTTTTTGGTGGTGTCATTCTCAACATGCATATGCACTGGAAGAAACATGAAACCGTGAAAGTCTTCTTTAAGCCTTGTAAACCAGGCCAAATACATGAATATGTGCAAGAAATAGAACGATTGAGTGGTGGTATAGCAATACAAATAATCGGAGATGACACCTCTATATTCTATAGAGGAAAGAACTATGTGCAACCGGAAATCATGTCACCCATTGATACACTGTCCAAGAAAAGGGCCTTGGAGAAATCCAAGTATGAGCAATCACTGGAAACTGTGAGGCATTTCATTGCTGTTGCTGAAAAGGAATTGGAGCTTTATTACAGGCATATAGCACTGTATGGTATTTCAAACAAGCAGACATGTAGTACAATTGCTCAAAATTCAATAGAAGACTCAAATGATACTGTAAATCGTCATTTCACAAAAAGCAAAATTCTTGAGTCAACCCTCTATTCTACATGCGATCCTCAAATGGATTATGATTCCTCGGATCAAGAATTAAATGGTACTGGAAATGTGTCTTCCAGTGAGACAGAGCTAGATGGTGACTGCATGTCTGATGATGAAGACGATCTGGATTCTGAAGGGAGAGAGGAAGCTTTACCAAAATTAACGTAA ATGGGAATTGCTAATACTCAATTGTTCTCTTCACTTTTGTTGACTTCGTATAATCCTGGAACCCTTTGGGGAATTTGCAGACCATTGTGTTTTCCATACACATCAGAACCCTGTTTAGTGTCCCGGAATTTCAGTTATGGCACAGTGAACTTGGTTATTTCTCAGGGGAAACCCAAATTTGAAGTCCAAGAAGTTGATCCTCCAAAGAAAGACAAGTGGAAGACGAAGAAGAGGCTCAAGATGCAGAGGTTGAGAGAGAAAAAAGAGAGGAAAGCAGCAAATAGAAGAGATCCACGGCGTCTCACTGTTAAGAGGAAGAAGCAAAAGTTTGCTAGTGTTGAGGATAGGATCAAAGACAAGCTCGAAAGGGCAAGAATCAAAGAGGCTTTATTGGTTGAGCGCCTCAAAAAGTATGAAGTTCCAAAGGTTCAGGGTCCTGTTGTTCGACCACACAAGATAAATGGTGAGGAGAAGTTTTATTTCAAGAAGATGGCCCAGAAAAGGTCTAATTATGTTCCAGTTGGAAGAAGAGGTGTTTTTGGTGGTGTCATTCTCAACATGCATATGCACTGGAAGAAACATGAAACCGTGAAAGTCTTCTTTAAGCCTTGTAAACCAGGCCAAATACATGAATATGTGCAAGAAATAGAACGATTGAGTGGTGGTATAGCAATACAAATAATCGGAGATGACACCTCTATATTCTATAGAGGAAAGAACTATGTGCAACCGGAAATCATGTCACCCATTGATACACTGTCCAAGAAAAGGGCCTTGGAGAAATCCAAGTATGAGCAATCACTGGAAACTGTGAGGCATTTCATTGCTGTTGCTGAAAAGGAATTGGAGCTTTATTACAGGCATATAGCACTGTATGGTATTTCAAACAAGCAGACATGTAGTACAATTGCTCAAAATTCAATAGAAGACTCAAATGATACTGTAAATCGTCATTTCACAAAAAGCAAAATTCTTGAGTCAACCCTCTATTCTACATGCGATCCTCAAATGGATTATGATTCCTCGGATCAAGAATTAAATGGTACTGGAAATGTGTCTTCCAGTGAGACAGAGCTAGATGGTGACTGCATGTCTGATGATGAAGACGATCTGGATTCTGAAGGGAGAGAGGAAGCTTTACCAAAATTAACGTAA MGIANTQLFSSLLLTSYNPGTLWGICRPLCFPYTSEPCLVSRNFSYGTVNLVISQGKPKFEVQEVDPPKKDKWKTKKRLKMQRLREKKERKAANRRDPRRLTVKRKKQKFASVEDRIKDKLERARIKEALLVERLKKYEVPKVQGPVVRPHKINGEEKFYFKKMAQKRSNYVPVGRRGVFGGVILNMHMHWKKHETVKVFFKPCKPGQIHEYVQEIERLSGGIAIQIIGDDTSIFYRGKNYVQPEIMSPIDTLSKKRALEKSKYEQSLETVRHFIAVAEKELELYYRHIALYGISNKQTCSTIAQNSIEDSNDTVNRHFTKSKILESTLYSTCDPQMDYDSSDQELNGTGNVSSSETELDGDCMSDDEDDLDSEGREEALPKLT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19674.1 vs. NCBI nr
Match: gi|902222580|gb|KNA19210.1| (hypothetical protein SOVF_063670 [Spinacia oleracea]) HSP 1 Score: 730.3 bits (1884), Expect = 1.700e-207 Identity = 373/376 (99.20%), Postives = 373/376 (99.20%), Query Frame = 1
BLAST of Spo19674.1 vs. NCBI nr
Match: gi|731323048|ref|XP_010672222.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 547.0 bits (1408), Expect = 2.700e-152 Identity = 292/363 (80.44%), Postives = 314/363 (86.50%), Query Frame = 1
BLAST of Spo19674.1 vs. NCBI nr
Match: gi|731323050|ref|XP_010672223.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 545.8 bits (1405), Expect = 6.000e-152 Identity = 290/359 (80.78%), Postives = 312/359 (86.91%), Query Frame = 1
BLAST of Spo19674.1 vs. NCBI nr
Match: gi|645231621|ref|XP_008222482.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Prunus mume]) HSP 1 Score: 427.6 bits (1098), Expect = 2.400e-116 Identity = 224/339 (66.08%), Postives = 276/339 (81.42%), Query Frame = 1
BLAST of Spo19674.1 vs. NCBI nr
Match: gi|567901040|ref|XP_006443008.1| (hypothetical protein CICLE_v10020228mg [Citrus clementina]) HSP 1 Score: 424.9 bits (1091), Expect = 1.500e-115 Identity = 231/349 (66.19%), Postives = 273/349 (78.22%), Query Frame = 1
BLAST of Spo19674.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIA4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063670 PE=4 SV=1) HSP 1 Score: 730.3 bits (1884), Expect = 1.200e-207 Identity = 373/376 (99.20%), Postives = 373/376 (99.20%), Query Frame = 1
BLAST of Spo19674.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CUP4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057450 PE=4 SV=1) HSP 1 Score: 547.0 bits (1408), Expect = 1.900e-152 Identity = 292/363 (80.44%), Postives = 314/363 (86.50%), Query Frame = 1
BLAST of Spo19674.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CUX2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g057450 PE=4 SV=1) HSP 1 Score: 545.8 bits (1405), Expect = 4.200e-152 Identity = 290/359 (80.78%), Postives = 312/359 (86.91%), Query Frame = 1
BLAST of Spo19674.1 vs. UniProtKB/TrEMBL
Match: V4T7K8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020228mg PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 1.100e-115 Identity = 231/349 (66.19%), Postives = 273/349 (78.22%), Query Frame = 1
BLAST of Spo19674.1 vs. UniProtKB/TrEMBL
Match: A0A061EJ15_THECC (RNA-binding CRS1 / YhbY domain protein OS=Theobroma cacao GN=TCM_020019 PE=4 SV=1) HSP 1 Score: 424.5 bits (1090), Expect = 1.400e-115 Identity = 226/346 (65.32%), Postives = 267/346 (77.17%), Query Frame = 1
BLAST of Spo19674.1 vs. ExPASy Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 5.800e-38 Identity = 87/183 (47.54%), Postives = 120/183 (65.57%), Query Frame = 1
BLAST of Spo19674.1 vs. ExPASy Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 1.100e-17 Identity = 83/296 (28.04%), Postives = 139/296 (46.96%), Query Frame = 1
BLAST of Spo19674.1 vs. ExPASy Swiss-Prot
Match: CRS1_ORYSJ (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 4.000e-15 Identity = 51/137 (37.23%), Postives = 75/137 (54.74%), Query Frame = 1
BLAST of Spo19674.1 vs. ExPASy Swiss-Prot
Match: CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CFM3 PE=1 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 5.300e-15 Identity = 64/233 (27.47%), Postives = 106/233 (45.49%), Query Frame = 1
BLAST of Spo19674.1 vs. ExPASy Swiss-Prot
Match: CRS1_MAIZE (Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1) HSP 1 Score: 83.6 bits (205), Expect = 5.300e-15 Identity = 49/130 (37.69%), Postives = 72/130 (55.38%), Query Frame = 1
BLAST of Spo19674.1 vs. TAIR (Arabidopsis)
Match: AT2G28480.1 (RNA-binding CRS1 / YhbY (CRM) domain protein) HSP 1 Score: 394.0 bits (1011), Expect = 1.000e-109 Identity = 209/326 (64.11%), Postives = 253/326 (77.61%), Query Frame = 1
BLAST of Spo19674.1 vs. TAIR (Arabidopsis)
Match: AT4G13070.1 (RNA-binding CRS1 / YhbY (CRM) domain protein) HSP 1 Score: 209.9 bits (533), Expect = 2.700e-54 Identity = 118/250 (47.20%), Postives = 159/250 (63.60%), Query Frame = 1
BLAST of Spo19674.1 vs. TAIR (Arabidopsis)
Match: AT3G25440.1 (RNA-binding CRS1 / YhbY (CRM) domain protein) HSP 1 Score: 148.3 bits (373), Expect = 9.800e-36 Identity = 98/231 (42.42%), Postives = 139/231 (60.17%), Query Frame = 1
BLAST of Spo19674.1 vs. TAIR (Arabidopsis)
Match: AT3G27550.1 (RNA-binding CRS1 / YhbY (CRM) domain protein) HSP 1 Score: 138.3 bits (347), Expect = 1.000e-32 Identity = 107/306 (34.97%), Postives = 166/306 (54.25%), Query Frame = 1
BLAST of Spo19674.1 vs. TAIR (Arabidopsis)
Match: AT3G18390.1 (CRS1 / YhbY (CRM) domain-containing protein) HSP 1 Score: 97.4 bits (241), Expect = 2.000e-20 Identity = 63/177 (35.59%), Postives = 94/177 (53.11%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19674.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19674.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19674.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19674.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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