Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGATAACTTGAATAATTTAGCATTGCCAAAATTCTCTCTTACAATTTCCTATTCTTTACTTCTCTCTTTCTCTATTTTTCTTAAGGCAGCAGAAATGGCGACTATGGAAGAATGGATAGCTGAACTGGTAAGAGCTTTACATCATTATTACTTCATCAATTAGTTTCTCAGTCCGAAATTAGTTGTCTTCAATGTGATTGTTAGTTATGGAGTAATGATATACTGTCTTTTTGGATGACATAATTTAACTTTTGACGATATTAATATAATCTACTTTGACTATTTATTGTGACTTATACTTTAAAAGAAAATAGTCATGTAATATCTTATGATAATCATCTCATCATATAGTAAGTTATTTTTCAAGAGACATGTCATATGAATTGGGAACAGTAGAGTATGTACCATTGTACCGTCATTAATCATTATATTAATATGGTAATGTGTGAAAAGATCCTTTCATTGCTTCAATCGCTCGATTAGGCCCTGTAAAAGTTTGATAGGTAGCTAAAATGTTAGGCCTATTATAATACGGAGTAATATAAAACTCTTATCAAAGCCGCCATCTTTTATTTTATTTTATTTATTTATATACTTCATTCTTTCTCTTTTACATTTTACTTTAATTATAAATTTTAATTTTCACGTTTGTTAATATATAACTTTAACTATTTATATCTCTAATTATGAACATATTAAATTATAAAGTATACTATTGTGTTATTAAAAATTGAGACGAATTTAACGAGATTATGAAATAGTATGTTTCACTTTACATAATAAATATAAGCCACCAAGGCAGTAAGGCACCAAATAGAGTCCAACAAAAGTTTGTGAATAGTGTAGTAAAAAAAAAATGTTGCAACTATTAGTGAAAGGAGGAAGGGCATCGGTGGTATTCGGCACTAAAGCTTAAGGTATCGGGTAGCTAGCGTTTTCATCTCGTCAAAACTAACTTTAAATAAGAATTGTATATTTTTTTTGGTTACTTATGTACGGAGTATTACTTGATGCGTGCAGGAAATGGATGTAAATCCAGTCCTTTACCACCAATATGATCACCACAGTAAAACCATGGAAGCTTCCCTCGATGAACAACTTGCTGCTACACTTGGTGACGACTTCCCTTACCCTCTCTACAACGTTACGAGAGACATTGCTTCTCCTCAGGAAGATTTTGATTGCGATCTCATCGAACAATTTATATTATCGTCCAATATCAATGACGACAACAACAACAACAATGATGGCGACAATATCGTAAGCTTAAATGTTCAGGAGAACCAACCATTGAAGAAGAAGAAAGAGACGAAGAAGCAAGCAGAAGCAGTAAGTGTAAGCACAAAGAGGAAACGACAGCCAAGCCAAGTGCAAGATCACATTATGGCCGAGAGGAAACGTCGGGAATTACTTAGCCAGTTGTTCATTTCGCTCTCTGCACTCGTTCCCAACCTTAAGAAGGTACTCATTTTCTTCAACTGATCTTGGTATTATTAAAAGAGGGAGTGAGTAAATGTGAAGACCATAAGTGAAACAAAAAGATTAATATAATTTGAAGTGAAGATCATGACATACTTTTATTATCATTACCCCATTGCCTCAAAGAGGCCCCGCAAGAAGCGGGGTAAGGGGGGTCGGGTGTACGCAACCTTACCCCATTGCNTCAAAGAGGCCCCGCAAGAAGCGGGGTAAGGGGGGTCGGGTGTACGCAACCTTACCCCTGTAATTGCAGAGAGGTTGTTTCCAATTGACCCAAAAGCGATAACGGGACGACAACGGGACGACCATCTTCTACTTCATGAAAAGGAAGCGAAGAGGTTTTAAGAGTCATTTTGATTTAGTCCATTACATCCACAGCTAAAAGAACAAATGAATCTTTGACTCCAACGAAAATGGACAAGATCATGACATACTCCGTACCAAAAATATAGACAGTATAAATTACACTTACTCCTTTCTCTTTTAGTTGCAAGGTTTCTACTTTGATTGTTTCTTATTAGTTGCAAGTTTGCAACTTATCAATTTTGATAACCTTTTGCTACCAATTTTACCAAAATACCCTCACTTGTTTTTATAAACCTACCCACTTACACTACTCATGTCGATCAATTTTTTTTTAACTCAATAGTTAATTATTTCTAATAGGGGGATAAATATGTAAATTCTCTCGTATTCACTTGCAATTGAAAATTCATGATGCATGAACAGTAAACTTGCATTTGTTCCAAAACGGAGGAAGTATTATATTACGACCGCTTTTAAATAGTATAACTCGTATTAGGTGTACAATGTAGTTTTTGAACCACTTAATTGAAAGTATTTGACCAATATATATACAGATTGACAAAACAACGGTGTTAGGAGAGGCAATCAAACATATGAAACAACTTCAAGAAAAAGTTAAGGCACTTGAAGGAGTAGTAGCTGCAAAGAAGACTGTGGAGTCCGTTGTGGTTGTGAAAAAATCTAAAGTCATGGTCGGAGACAATGGCAGTAGCGATGATAATGTTTCTTCGTCGACTGTGGGTGACTATACAAGCCGAAGTAGTGGCAGTAGCGGTGATGGTAATGGTAATGGTGGTGGTAGTGGTGGTTGTAATGATCTACAACTACCGGAAATCCAGGTTAAGACGATGGGCAACACGCTTCTCTCAAGAATATATTGTGAAAAACATAATGGGATATTGGCCAAGTTATTCACCAAGGTGGACAAACATAATTTGAGCATTACTAGTTTTAGCGTTATACCATTTGAAAGCTTTGCCTTAGACATTACCATTGCGGCACAGGTAATTACTTAGGCTCTGTTCTTTTAGACTAAATTTATACTAACCAGTATATTATGAATCTTGAAAGAACAAACTTTGACACTAACTATATGTGTTTATTAATCTATTTTGCAGATGGAAGACGGGTTCAACAGGAATGTGAATGATTTTGTTAGAAGTCTACATTCCGCCATTCGATCGCCATCAATAAAAACAAGATGATCACTGTTCTTGGATTGTATGTTTCAATATGTTATGCTAGCTAGCTACTACGTAGAGATTTATTAGTTTAGATTTTATTTGTTCAACTTTAAAAATTCTCCGGAAAGGAACAACGGTTCCATTTCCATTTTCTATACAAGGGAAGGTGGTGTAAAAAATTGTTTTACACTCTATTCAATAAATAATAAACTCGTGTAACATACGTTTTTTTAGGTATAAAAATTATTATTTACTCCGTAATACTCCC AGATAACTTGAATAATTTAGCATTGCCAAAATTCTCTCTTACAATTTCCTATTCTTTACTTCTCTCTTTCTCTATTTTTCTTAAGGCAGCAGAAATGGCGACTATGGAAGAATGGATAGCTGAACTGGAAATGGATGTAAATCCAGTCCTTTACCACCAATATGATCACCACAGTAAAACCATGGAAGCTTCCCTCGATGAACAACTTGCTGCTACACTTGGTGACGACTTCCCTTACCCTCTCTACAACGTTACGAGAGACATTGCTTCTCCTCAGGAAGATTTTGATTGCGATCTCATCGAACAATTTATATTATCGTCCAATATCAATGACGACAACAACAACAACAATGATGGCGACAATATCGTAAGCTTAAATGTTCAGGAGAACCAACCATTGAAGAAGAAGAAAGAGACGAAGAAGCAAGCAGAAGCAGTAAGTGTAAGCACAAAGAGGAAACGACAGCCAAGCCAAGTGCAAGATCACATTATGGCCGAGAGGAAACGTCGGGAATTACTTAGCCAGTTGTTCATTTCGCTCTCTGCACTCGTTCCCAACCTTAAGAAGATTGACAAAACAACGGTGTTAGGAGAGGCAATCAAACATATGAAACAACTTCAAGAAAAAGTTAAGGCACTTGAAGGAGTAGTAGCTGCAAAGAAGACTGTGGAGTCCGTTGTGGTTGTGAAAAAATCTAAAGTCATGGTCGGAGACAATGGCAGTAGCGATGATAATGTTTCTTCGTCGACTGTGGGTGACTATACAAGCCGAAGTAGTGGCAGTAGCGGTGATGGTAATGGTAATGGTGGTGGTAGTGGTGGTTGTAATGATCTACAACTACCGGAAATCCAGGTTAAGACGATGGGCAACACGCTTCTCTCAAGAATATATTGTGAAAAACATAATGGGATATTGGCCAAGTTATTCACCAAGGTGGACAAACATAATTTGAGCATTACTAGTTTTAGCGTTATACCATTTGAAAGCTTTGCCTTAGACATTACCATTGCGGCACAGATGGAAGACGGGTTCAACAGGAATGTGAATGATTTTGTTAGAAGTCTACATTCCGCCATTCGATCGCCATCAATAAAAACAAGATGATCACTGTTCTTGGATTGTATGTTTCAATATGTTATGCTAGCTAGCTACTACGTAGAGATTTATTAGTTTAGATTTTATTTGTTCAACTTTAAAAATTCTCCGGAAAGGAACAACGGTTCCATTTCCATTTTCTATACAAGGGAAGGTGGTGTAAAAAATTGTTTTACACTCTATTCAATAAATAATAAACTCGTGTAACATACGTTTTTTTAGGTATAAAAATTATTATTTACTCCGTAATACTCCC ATGGCGACTATGGAAGAATGGATAGCTGAACTGGAAATGGATGTAAATCCAGTCCTTTACCACCAATATGATCACCACAGTAAAACCATGGAAGCTTCCCTCGATGAACAACTTGCTGCTACACTTGGTGACGACTTCCCTTACCCTCTCTACAACGTTACGAGAGACATTGCTTCTCCTCAGGAAGATTTTGATTGCGATCTCATCGAACAATTTATATTATCGTCCAATATCAATGACGACAACAACAACAACAATGATGGCGACAATATCGTAAGCTTAAATGTTCAGGAGAACCAACCATTGAAGAAGAAGAAAGAGACGAAGAAGCAAGCAGAAGCAGTAAGTGTAAGCACAAAGAGGAAACGACAGCCAAGCCAAGTGCAAGATCACATTATGGCCGAGAGGAAACGTCGGGAATTACTTAGCCAGTTGTTCATTTCGCTCTCTGCACTCGTTCCCAACCTTAAGAAGATTGACAAAACAACGGTGTTAGGAGAGGCAATCAAACATATGAAACAACTTCAAGAAAAAGTTAAGGCACTTGAAGGAGTAGTAGCTGCAAAGAAGACTGTGGAGTCCGTTGTGGTTGTGAAAAAATCTAAAGTCATGGTCGGAGACAATGGCAGTAGCGATGATAATGTTTCTTCGTCGACTGTGGGTGACTATACAAGCCGAAGTAGTGGCAGTAGCGGTGATGGTAATGGTAATGGTGGTGGTAGTGGTGGTTGTAATGATCTACAACTACCGGAAATCCAGGTTAAGACGATGGGCAACACGCTTCTCTCAAGAATATATTGTGAAAAACATAATGGGATATTGGCCAAGTTATTCACCAAGGTGGACAAACATAATTTGAGCATTACTAGTTTTAGCGTTATACCATTTGAAAGCTTTGCCTTAGACATTACCATTGCGGCACAGATGGAAGACGGGTTCAACAGGAATGTGAATGATTTTGTTAGAAGTCTACATTCCGCCATTCGATCGCCATCAATAAAAACAAGATGA MATMEEWIAELEMDVNPVLYHQYDHHSKTMEASLDEQLAATLGDDFPYPLYNVTRDIASPQEDFDCDLIEQFILSSNINDDNNNNNDGDNIVSLNVQENQPLKKKKETKKQAEAVSVSTKRKRQPSQVQDHIMAERKRRELLSQLFISLSALVPNLKKIDKTTVLGEAIKHMKQLQEKVKALEGVVAAKKTVESVVVVKKSKVMVGDNGSSDDNVSSSTVGDYTSRSSGSSGDGNGNGGGSGGCNDLQLPEIQVKTMGNTLLSRIYCEKHNGILAKLFTKVDKHNLSITSFSVIPFESFALDITIAAQMEDGFNRNVNDFVRSLHSAIRSPSIKTR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19675.1 vs. NCBI nr
Match: gi|902219601|gb|KNA18362.1| (hypothetical protein SOVF_071590 [Spinacia oleracea]) HSP 1 Score: 370.5 bits (950), Expect = 3.000e-99 Identity = 231/348 (66.38%), Postives = 263/348 (75.57%), Query Frame = 1
BLAST of Spo19675.1 vs. NCBI nr
Match: gi|731343791|ref|XP_010683069.1| (PREDICTED: transcription factor bHLH18-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 349.0 bits (894), Expect = 9.400e-93 Identity = 206/342 (60.23%), Postives = 255/342 (74.56%), Query Frame = 1
BLAST of Spo19675.1 vs. NCBI nr
Match: gi|870855234|gb|KMT06967.1| (hypothetical protein BVRB_6g153010 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 337.8 bits (865), Expect = 2.200e-89 Identity = 198/319 (62.07%), Postives = 242/319 (75.86%), Query Frame = 1
BLAST of Spo19675.1 vs. NCBI nr
Match: gi|731374485|ref|XP_010666979.1| (PREDICTED: transcription factor bHLH18-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 329.7 bits (844), Expect = 5.900e-87 Identity = 206/338 (60.95%), Postives = 249/338 (73.67%), Query Frame = 1
BLAST of Spo19675.1 vs. NCBI nr
Match: gi|870842222|gb|KMS95692.1| (hypothetical protein BVRB_005810 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 316.2 bits (809), Expect = 6.700e-83 Identity = 196/316 (62.03%), Postives = 237/316 (75.00%), Query Frame = 1
BLAST of Spo19675.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHN8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_071590 PE=4 SV=1) HSP 1 Score: 370.5 bits (950), Expect = 2.100e-99 Identity = 231/348 (66.38%), Postives = 263/348 (75.57%), Query Frame = 1
BLAST of Spo19675.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C0G1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153010 PE=4 SV=1) HSP 1 Score: 337.8 bits (865), Expect = 1.500e-89 Identity = 198/319 (62.07%), Postives = 242/319 (75.86%), Query Frame = 1
BLAST of Spo19675.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B7C8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_005810 PE=4 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 4.700e-83 Identity = 196/316 (62.03%), Postives = 237/316 (75.00%), Query Frame = 1
BLAST of Spo19675.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUE1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145330 PE=4 SV=1) HSP 1 Score: 286.6 bits (732), Expect = 4.000e-74 Identity = 190/318 (59.75%), Postives = 226/318 (71.07%), Query Frame = 1
BLAST of Spo19675.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZM4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g152990 PE=4 SV=1) HSP 1 Score: 276.6 bits (706), Expect = 4.100e-71 Identity = 176/328 (53.66%), Postives = 226/328 (68.90%), Query Frame = 1
BLAST of Spo19675.1 vs. ExPASy Swiss-Prot
Match: BH018_ARATH (Transcription factor bHLH18 OS=Arabidopsis thaliana GN=BHLH18 PE=2 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 1.600e-31 Identity = 96/219 (43.84%), Postives = 132/219 (60.27%), Query Frame = 1
BLAST of Spo19675.1 vs. ExPASy Swiss-Prot
Match: BH025_ARATH (Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2) HSP 1 Score: 132.1 bits (331), Expect = 1.100e-29 Identity = 98/233 (42.06%), Postives = 138/233 (59.23%), Query Frame = 1
BLAST of Spo19675.1 vs. ExPASy Swiss-Prot
Match: BH020_ARATH (Transcription factor NAI1 OS=Arabidopsis thaliana GN=NAI1 PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 3.800e-25 Identity = 84/237 (35.44%), Postives = 138/237 (58.23%), Query Frame = 1
BLAST of Spo19675.1 vs. ExPASy Swiss-Prot
Match: BH019_ARATH (Transcription factor bHLH19 OS=Arabidopsis thaliana GN=BHLH19 PE=2 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 8.400e-25 Identity = 88/250 (35.20%), Postives = 129/250 (51.60%), Query Frame = 1
BLAST of Spo19675.1 vs. ExPASy Swiss-Prot
Match: MYC2_ORYSJ (Transcription factor MYC2 OS=Oryza sativa subsp. japonica GN=MYC2 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 1.100e-8 Identity = 59/185 (31.89%), Postives = 93/185 (50.27%), Query Frame = 1
BLAST of Spo19675.1 vs. TAIR (Arabidopsis)
Match: AT2G22750.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 138.3 bits (347), Expect = 8.900e-33 Identity = 96/219 (43.84%), Postives = 132/219 (60.27%), Query Frame = 1
BLAST of Spo19675.1 vs. TAIR (Arabidopsis)
Match: AT4G37850.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 132.1 bits (331), Expect = 6.400e-31 Identity = 98/233 (42.06%), Postives = 138/233 (59.23%), Query Frame = 1
BLAST of Spo19675.1 vs. TAIR (Arabidopsis)
Match: AT2G22770.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 117.1 bits (292), Expect = 2.100e-26 Identity = 84/237 (35.44%), Postives = 138/237 (58.23%), Query Frame = 1
BLAST of Spo19675.1 vs. TAIR (Arabidopsis)
Match: AT2G22760.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 115.9 bits (289), Expect = 4.700e-26 Identity = 88/250 (35.20%), Postives = 129/250 (51.60%), Query Frame = 1
BLAST of Spo19675.1 vs. TAIR (Arabidopsis)
Match: AT4G09820.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 54.3 bits (129), Expect = 1.700e-7 Identity = 28/66 (42.42%), Postives = 48/66 (72.73%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19675.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19675.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19675.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19675.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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