Spo19681 (gene) | SpinachBase

Overview


Name	Spo19681
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane protein, putative
Location	SpoScf_73812 : 195 .. 455 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGACAGAATTGCTGACTTGGCATTGGCAATCACCCGTATGGCTCGTAACTCCTGTTGTATATGAGGCATATCGAGTGCTGCAGCTCATGAGGGGTTTGAAGCTTAGCGCAGAGATAAGTGCACCTGCATGGATGATGCATACTATAAGGGGGTTGGTGTGTTGGTGGGTGCTCATTCTTGGTTTGCAGCTCATGAGGGTTGCTTGGTATGCTGGCTTCTCTGCTAAAACGCGTAAAGAGCAGAGATCATATCCGTGA

mRNA sequence

ATGTTGACAGAATTGCTGACTTGGCATTGGCAATCACCCGTATGGCTCGTAACTCCTGTTGTATATGAGGCATATCGAGTGCTGCAGCTCATGAGGGGTTTGAAGCTTAGCGCAGAGATAAGTGCACCTGCATGGATGATGCATACTATAAGGGGGTTGGTGTGTTGGTGGGTGCTCATTCTTGGTTTGCAGCTCATGAGGGTTGCTTGGTATGCTGGCTTCTCTGCTAAAACGCGTAAAGAGCAGAGATCATATCCGTGA

Coding sequence (CDS)

ATGTTGACAGAATTGCTGACTTGGCATTGGCAATCACCCGTATGGCTCGTAACTCCTGTTGTATATGAGGCATATCGAGTGCTGCAGCTCATGAGGGGTTTGAAGCTTAGCGCAGAGATAAGTGCACCTGCATGGATGATGCATACTATAAGGGGGTTGGTGTGTTGGTGGGTGCTCATTCTTGGTTTGCAGCTCATGAGGGTTGCTTGGTATGCTGGCTTCTCTGCTAAAACGCGTAAAGAGCAGAGATCATATCCGTGA

Protein sequence

MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLILGLQLMRVAWYAGFSAKTRKEQRSYP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19681.1	Spo19681.1	mRNA

Homology

[Close]

BLAST of Spo19681.1 vs. NCBI nr
Match: gi|902230067|gb|KNA21697.1| (hypothetical protein SOVF_040260 [Spinacia oleracea])

HSP 1 Score: 181.0 bits (458), Expect = 8.700e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI
Sbjct: 242 MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 301

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRSYP 87
           LGLQLMRVAWYAGFSAKTRKEQRSYP
Sbjct: 302 LGLQLMRVAWYAGFSAKTRKEQRSYP 327

[Close]

BLAST of Spo19681.1 vs. NCBI nr
Match: gi|731361090|ref|XP_010692169.1| (PREDICTED: uncharacterized protein LOC104905351 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 160.6 bits (405), Expect = 1.200e-36
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTELLTWHW+SPVWLVTPV+YEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI
Sbjct: 243 MLTELLTWHWKSPVWLVTPVIYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 302

Query: 61  LGLQLMRVAWYAGFSAKTRKE 82
           LGLQLMRVAW+AGFSA+ +K+
Sbjct: 303 LGLQLMRVAWFAGFSARNQKK 323

[Close]

BLAST of Spo19681.1 vs. NCBI nr
Match: gi|590723286|ref|XP_007052144.1| (Uncharacterized protein TCM_005578 [Theobroma cacao])

HSP 1 Score: 160.6 bits (405), Expect = 1.200e-36
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTE+LTWHWQSPVWLVTPVVYEAYRVLQLMRGLKL AE+SAPAWMMHTIRGLVCWWVLI
Sbjct: 248 MLTEMLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLGAELSAPAWMMHTIRGLVCWWVLI 307

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRS 85
           LG+QLMRVAW+AGF+A+ R++Q S
Sbjct: 308 LGVQLMRVAWFAGFTARARQQQSS 331

[Close]

BLAST of Spo19681.1 vs. NCBI nr
Match: gi|357469915|ref|XP_003605242.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 156.8 bits (395), Expect = 1.700e-35
Identity = 70/84 (83.33%), Postives = 80/84 (95.24%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           +LTELLTW+WQSPVWLVTP++YEAYR+LQLMRGLKL AE++APAWMMHTIRGLVCWWVLI
Sbjct: 248 ILTELLTWYWQSPVWLVTPIIYEAYRILQLMRGLKLGAELTAPAWMMHTIRGLVCWWVLI 307

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRS 85
           LGLQLMRVAW+AG SA+ RK+Q S
Sbjct: 308 LGLQLMRVAWFAGLSARARKDQSS 331

[Close]

BLAST of Spo19681.1 vs. NCBI nr
Match: gi|728828565|gb|KHG08008.1| (Cytochrome P450 [Gossypium arboreum])

HSP 1 Score: 156.4 bits (394), Expect = 2.300e-35
Identity = 69/84 (82.14%), Postives = 80/84 (95.24%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTE+LTWHW+SP+WLVTPVVYEAYRVLQLMRGLKL  E+SAPAWMMHTIRGLVCWWVLI
Sbjct: 251 MLTEMLTWHWESPIWLVTPVVYEAYRVLQLMRGLKLGVELSAPAWMMHTIRGLVCWWVLI 310

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRS 85
           LG+QLMRVAW+AGF+A+ +++Q S
Sbjct: 311 LGVQLMRVAWFAGFTARAQRQQSS 334

[Close]

BLAST of Spo19681.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RSC1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040260 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 6.000e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI
Sbjct: 242 MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 301

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRSYP 87
           LGLQLMRVAWYAGFSAKTRKEQRSYP
Sbjct: 302 LGLQLMRVAWYAGFSAKTRKEQRSYP 327

[Close]

BLAST of Spo19681.1 vs. UniProtKB/TrEMBL
Match: A0A061DW65_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005578 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.400e-37
Identity = 73/84 (86.90%), Postives = 81/84 (96.43%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTE+LTWHWQSPVWLVTPVVYEAYRVLQLMRGLKL AE+SAPAWMMHTIRGLVCWWVLI
Sbjct: 248 MLTEMLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLGAELSAPAWMMHTIRGLVCWWVLI 307

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRS 85
           LG+QLMRVAW+AGF+A+ R++Q S
Sbjct: 308 LGVQLMRVAWFAGFTARARQQQSS 331

[Close]

BLAST of Spo19681.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EAH6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018600 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.400e-37
Identity = 74/81 (91.36%), Postives = 80/81 (98.77%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTELLTWHW+SPVWLVTPV+YEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI
Sbjct: 243 MLTELLTWHWKSPVWLVTPVIYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 302

Query: 61  LGLQLMRVAWYAGFSAKTRKE 82
           LGLQLMRVAW+AGFSA+ +K+
Sbjct: 303 LGLQLMRVAWFAGFSARNQKK 323

[Close]

BLAST of Spo19681.1 vs. UniProtKB/TrEMBL
Match: G7JH36_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g027070 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.200e-35
Identity = 70/84 (83.33%), Postives = 80/84 (95.24%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           +LTELLTW+WQSPVWLVTP++YEAYR+LQLMRGLKL AE++APAWMMHTIRGLVCWWVLI
Sbjct: 248 ILTELLTWYWQSPVWLVTPIIYEAYRILQLMRGLKLGAELTAPAWMMHTIRGLVCWWVLI 307

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRS 85
           LGLQLMRVAW+AG SA+ RK+Q S
Sbjct: 308 LGLQLMRVAWFAGLSARARKDQSS 331

[Close]

BLAST of Spo19681.1 vs. UniProtKB/TrEMBL
Match: A0A0B0N0U7_GOSAR (Cytochrome P450 OS=Gossypium arboreum GN=F383_13800 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.600e-35
Identity = 69/84 (82.14%), Postives = 80/84 (95.24%), Query Frame = 1

		  
Query: 1   MLTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLI 60
           MLTE+LTWHW+SP+WLVTPVVYEAYRVLQLMRGLKL  E+SAPAWMMHTIRGLVCWWVLI
Sbjct: 251 MLTEMLTWHWESPIWLVTPVVYEAYRVLQLMRGLKLGVELSAPAWMMHTIRGLVCWWVLI 310

Query: 61  LGLQLMRVAWYAGFSAKTRKEQRS 85
           LG+QLMRVAW+AGF+A+ +++Q S
Sbjct: 311 LGVQLMRVAWFAGFTARAQRQQSS 334

[Close]

BLAST of Spo19681.1 vs. TAIR (Arabidopsis)
Match: AT3G60590.3 (unknown protein)

HSP 1 Score: 141.0 bits (354), Expect = 3.500e-34
Identity = 62/82 (75.61%), Postives = 75/82 (91.46%), Query Frame = 1

		  
Query: 2   LTELLTWHWQSPVWLVTPVVYEAYRVLQLMRGLKLSAEISAPAWMMHTIRGLVCWWVLIL 61
           LTE+LTWHWQSPVWLVTPVVYEAYR+LQLMRGL LSAE++AP W++H +RGLV WWVLIL
Sbjct: 316 LTEILTWHWQSPVWLVTPVVYEAYRILQLMRGLTLSAEVNAPVWVVHMLRGLVSWWVLIL 375

Query: 62  GLQLMRVAWYAGFSAKTRKEQR 84
           G+QLMRVAW+AGF+++T   Q+
Sbjct: 376 GMQLMRVAWFAGFASRTTTGQQ 397

The following BLAST results are available for this feature:

BLAST of Spo19681.1 vs. NCBI nr
BLAST of Spo19681.1 vs. UniProtKB/TrEMBL
BLAST of Spo19681.1 vs. ExPASy Swiss-Prot
BLAST of Spo19681.1 vs. TAIR (Arabidopsis)

BLAST of Spo19681.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902230067\|gb\|KNA21697.1\|	8.7e-43	100.	hypothetical protein SOVF_0402...	[more]
gi\|731361090\|ref\|XP_010692169.1\|	1.2e-36	91.3	PREDICTED: uncharacterized pro...	[more]
gi\|590723286\|ref\|XP_007052144.1\|	1.2e-36	86.9	Uncharacterized protein TCM_00...	[more]
gi\|357469915\|ref\|XP_003605242.1\|	1.7e-35	83.3	transmembrane protein, putativ...	[more]
gi\|728828565\|gb\|KHG08008.1\|	2.3e-35	82.1	Cytochrome P450 [Gossypium arb...	[more]

BLAST of Spo19681.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RSC1_SPIOL	6.0e-43	100.	Uncharacterized protein OS=Spi...	[more]
A0A061DW65_THECC	8.4e-37	86.9	Uncharacterized protein OS=The...	[more]
A0A0J8EAH6_BETVU	8.4e-37	91.3	Uncharacterized protein OS=Bet...	[more]
G7JH36_MEDTR	1.2e-35	83.3	Transmembrane protein, putativ...	[more]
A0A0B0N0U7_GOSAR	1.6e-35	82.1	Cytochrome P450 OS=Gossypium a...	[more]

BLAST of Spo19681.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo19681.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT3G60590.3	3.5e-34	75.6	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33918	FAMILY NOT NAMED	coord: 1..85 score: 8.3
None	No IPR available	PANTHER	PTHR33918:SF3	SUBFAMILY NOT NAMED	coord: 1..85 score: 8.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04381	0.66	Barchart \| Table