Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGCTTCAAATAGACAAATTAATACTTCAATTGTTTAAGGAGTAATCCCAAACACCAAGGCAAAGAATTGGGAATACCTTGACTACCACGACAATCCAACAAACAATCCCCTTAAATCCTTAATTACACCGCAAATTCCCTAATCCTTAATCCTATCCTTTTATTCTTCCCTATTAAAATTAATTAAATAAAATAAATAAATAAAAAGATCAAACCACGAAATTTCCATATAAATATCCACAAAACCCTTTTCCAATCCTTTTGATTACTCTTTTTGATTGCGACGTCCCACATAGAGTTCTTCATTCAAAAGCTGTTCCAATCGCAAATTCTTCCCTTTTCTTGTTCTGGGTAATTTTCAATTTTTATAATTGATGTTCTTTGGATTATTTGATTGTTGATACTTCTTTGTAAATGTCTTTGAATTACTTTATGTTGATATTTTTCCTACTTTTGTTTGATCTTTTTGCAGATATCAATTCGACACCTTTGAGTGCTAATATGGCTAAAAACTCGTTCAAATTCGAGCACCCTCTTGGTTTGTTTACAATTCATTGATTTGGGGTTTTTCTTCTTCCTTAAAATTTTGGTGTTTTTGGTGTAATTTGAATGTTTTATGATGTGTTGTGATCATTTTTAGTGAATTATGCATCTGGGTAGTTTCTATTTATGAATGTTGGTAGCAATTATGTTCAATTATGTCTTAGTTATTGTATTAAATACATAATTGGATTAGGGTTTTGATTACAAAGATAAATTTCTTGCACTTTAACAAAATGTAGTCAAGATCTTCTTGTTTGATGGATTGTTGTGGGATTGGGAGTTATGGTTGATGATGCCCTGCCTCTTGTATTATTTCATAAATGAACCTGATTTTGGGGCTTTCTTTGGTAATGAATGGTGGTGGAATGTTTACTTGAATATGACTGATTCCTTGCGCAAATTCGGTACGAAATCTGAGTATATACTTAAGGAATAAGATAAACAATACTGAATTTGCCCTTTTCTTGAAGGAATGTCCTTAAATAAATATAGAGGTATGATGAATATACTGTTTGAATTGACATTGATGAATTACATTCATAAGTCTTGTAAACTTTGGAAAGACAGGAGTTAAGATTTTCAATTGAAATTAGGCAGCTTGCTTATTTGATGAACACATTTCCTCTGCTTTTTTCACCGGGGTTTGCACGTTAGTGTAAAGTTTTTCAAGGTTATTTATGTTGCTTGGAAAAGTTTGAGATGAATGTGTTATCTGATGTGTATACTGAAGGTTACTGCTTCTTTCAAACAATGTTAAAAATATGTGGTGTAGCCTTAATTACTTCCATGTTTGATGTACTAAATTAGTCAATCTATTAGATTGTAACGTTGTTCTCCATTACGACTCCTGTTTTTCTCTTGAGAATGTAAGCACGAATTGAAGCCCGTTTTTTTTGTATCTTTCCAGAAAAGAGACAAGCAGAATCTTCTCGTATCAGGGAGAAATATCCTGATAGAATTCCTGTAAGACATTTTTGTTTGCTGAATTGATTCTGATTATAACAAGACAAGCAGTTTTGGGGTATGATATTTTCTCAACTTCTTGAGAAATTCTCACCTAGTTGACCAATTTGTGCAGGTGATTGTGGAGAGGGCTGAAAAGACTGATATTCCCGACATTGATAAGAAAAAGTTAGTCCCATTTCTGGCAGTTCCTTAATTGCAGCCCCCATTATTTAACGCGGATTAGTTCTAAAACTATGGTGTTTTAGTTTAGATAGAACAAAGAAGTGCACTTTTTCTCAAATTTAGAAAGATTTATCTAGCTAGTGATTTATGTCAGAAATCCCTAATCTTGTAAATTCTTGCAGGTACCTCGTCCCAGCTGATTTGACCGTTGGTCAGTTTGTGTATGTGGTGAGGAAGAGAGTGAATCTGAGTGCCGAGAAAGCCATCTTCGTATTTGTCAAAAACATTTTACCTCCCACTGGTAAGTTGGAATGATATAGGCTCTGTTTGTTTCAACGGAAAACATTTTGAAAGGAAAATGATTTTCCATGGAAAATAATTTTGCCAAATAATTTTCAAGGGAACATATCAAGTGTAAATAGTTTTCCTTTGTTTGTTTCCTTTCAAAAAAAACATAGAAGTGAAAATGAGAGGAGAAAAGGGAAGTTGGTTTCCCTTAGAGAAAAGTTGTTTTCTGCCATTGGGAAAATTGCTTTCCACGTTTAACAAAACAAACAAAGGAAATGAAAGGTGTTTTCCGCCAAAACAAACAGAGCCTTAGTATTGAAATTGTTATGCAAATTTTTGTTTCTGAAAATGTTTGCAACTTTGGTTGTTTGGTTTTGCTACAGCCGCTTTACTGTCAACAATTTACGAGGACAATAAGGATGAAGATGGGTTTCTTTACATGACTTACAGCGGCGAGAATGTGTTCGGATTGAGGTGCACTACTTACTGATGCGTGCGTAAATAAGCATGGACTCATTCATGGTTGACATAAACTAGAAATGTAAATGTTCTGATGCTCATAATAACTATCATACTACTGTTTCTTAGAATCTCAATTTGTGTTGCTAACAATCAGTCTTGATTCTGTTTATATAATTAACTACATATTTTGAAGATGTTGGTTGTTCAGATTGCGTATTAACTACATATTTCTCTTTAGTTTGATGCTTTGTTGCTAATCATGTTCATCTTTTTGTATAATACTCTGTTCCTTTACATGCTAAAGAGTAAAGACGTACTACCACCGTTTTAAAAC AAAGCTTCAAATAGACAAATTAATACTTCAATTGTTTAAGGAGTAATCCCAAACACCAAGGCAAAGAATTGGGAATACCTTGACTACCACGACAATCCAACAAACAATCCCCTTAAATCCTTAATTACACCGCAAATTCCCTAATCCTTAATCCTATCCTTTTATTCTTCCCTATTAAAATTAATTAAATAAAATAAATAAATAAAAAGATCAAACCACGAAATTTCCATATAAATATCCACAAAACCCTTTTCCAATCCTTTTGATTACTCTTTTTGATTGCGACGTCCCACATAGAGTTCTTCATTCAAAAGCTGTTCCAATCGCAAATTCTTCCCTTTTCTTGTTCTGGATATCAATTCGACACCTTTGAGTGCTAATATGGCTAAAAACTCGTTCAAATTCGAGCACCCTCTTGAAAAGAGACAAGCAGAATCTTCTCGTATCAGGGAGAAATATCCTGATAGAATTCCTGTGATTGTGGAGAGGGCTGAAAAGACTGATATTCCCGACATTGATAAGAAAAAGTACCTCGTCCCAGCTGATTTGACCGTTGCCGCTTTACTGTCAACAATTTACGAGGACAATAAGGATGAAGATGGGTTTCTTTACATGACTTACAGCGGCGAGAATGTGTTCGGATTGAGGTGCACTACTTACTGATGCGTGCGTAAATAAGCATGGACTCATTCATGGTTGACATAAACTAGAAATGTAAATGTTCTGATGCTCATAATAACTATCATACTACTGTTTCTTAGAATCTCAATTTGTGTTGCTAACAATCAGTCTTGATTCTGTTTATATAATTAACTACATATTTTGAAGATGTTGGTTGTTCAGATTGCGTATTAACTACATATTTCTCTTTAGTTTGATGCTTTGTTGCTAATCATGTTCATCTTTTTGTATAATACTCTGTTCCTTTACATGCTAAAGAGTAAAGACGTACTACCACCGTTTTAAAAC ATGGCTAAAAACTCGTTCAAATTCGAGCACCCTCTTGAAAAGAGACAAGCAGAATCTTCTCGTATCAGGGAGAAATATCCTGATAGAATTCCTGTGATTGTGGAGAGGGCTGAAAAGACTGATATTCCCGACATTGATAAGAAAAAGTACCTCGTCCCAGCTGATTTGACCGTTGCCGCTTTACTGTCAACAATTTACGAGGACAATAAGGATGAAGATGGGTTTCTTTACATGACTTACAGCGGCGAGAATGTGTTCGGATTGAGGTGCACTACTTACTGA MAKNSFKFEHPLEKRQAESSRIREKYPDRIPVIVERAEKTDIPDIDKKKYLVPADLTVAALLSTIYEDNKDEDGFLYMTYSGENVFGLRCTTY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19930.1 vs. NCBI nr
Match: gi|902206248|gb|KNA15418.1| (hypothetical protein SOVF_098410 [Spinacia oleracea]) HSP 1 Score: 172.6 bits (436), Expect = 3.300e-40 Identity = 93/123 (75.61%), Postives = 93/123 (75.61%), Query Frame = 1
BLAST of Spo19930.1 vs. NCBI nr
Match: gi|731351047|ref|XP_010686829.1| (PREDICTED: autophagy-related protein 8C-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 156.8 bits (395), Expect = 1.900e-35 Identity = 83/120 (69.17%), Postives = 90/120 (75.00%), Query Frame = 1
BLAST of Spo19930.1 vs. NCBI nr
Match: gi|502083295|ref|XP_004487416.1| (PREDICTED: autophagy-related protein 8C [Cicer arietinum]) HSP 1 Score: 147.1 bits (370), Expect = 1.500e-32 Identity = 77/120 (64.17%), Postives = 86/120 (71.67%), Query Frame = 1
BLAST of Spo19930.1 vs. NCBI nr
Match: gi|661885613|emb|CDP10793.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 145.6 bits (366), Expect = 4.400e-32 Identity = 78/117 (66.67%), Postives = 84/117 (71.79%), Query Frame = 1
BLAST of Spo19930.1 vs. NCBI nr
Match: gi|802588365|ref|XP_012070847.1| (PREDICTED: autophagy-related protein 8c [Jatropha curcas]) HSP 1 Score: 145.2 bits (365), Expect = 5.700e-32 Identity = 77/118 (65.25%), Postives = 85/118 (72.03%), Query Frame = 1
BLAST of Spo19930.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7B0_SPIOL (Autophagy-related protein OS=Spinacia oleracea GN=SOVF_098410 PE=3 SV=1) HSP 1 Score: 172.6 bits (436), Expect = 2.300e-40 Identity = 93/123 (75.61%), Postives = 93/123 (75.61%), Query Frame = 1
BLAST of Spo19930.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVZ0_BETVU (Autophagy-related protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g186120 PE=3 SV=1) HSP 1 Score: 156.8 bits (395), Expect = 1.300e-35 Identity = 83/120 (69.17%), Postives = 90/120 (75.00%), Query Frame = 1
BLAST of Spo19930.1 vs. UniProtKB/TrEMBL
Match: A0A068UT49_COFCA (Autophagy-related protein OS=Coffea canephora GN=GSCOC_T00031664001 PE=3 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 3.000e-32 Identity = 78/117 (66.67%), Postives = 84/117 (71.79%), Query Frame = 1
BLAST of Spo19930.1 vs. UniProtKB/TrEMBL
Match: A0A164VAX0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_022570 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 6.800e-32 Identity = 77/117 (65.81%), Postives = 84/117 (71.79%), Query Frame = 1
BLAST of Spo19930.1 vs. UniProtKB/TrEMBL
Match: K4Q337_PETHY (Autophagy-related protein OS=Petunia hybrida GN=PhATG8a PE=2 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 6.800e-32 Identity = 79/117 (67.52%), Postives = 83/117 (70.94%), Query Frame = 1
BLAST of Spo19930.1 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 3.000e-33 Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 1
BLAST of Spo19930.1 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2) HSP 1 Score: 142.1 bits (357), Expect = 3.000e-33 Identity = 75/118 (63.56%), Postives = 85/118 (72.03%), Query Frame = 1
BLAST of Spo19930.1 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=1 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 3.300e-32 Identity = 73/118 (61.86%), Postives = 83/118 (70.34%), Query Frame = 1
BLAST of Spo19930.1 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 1.300e-31 Identity = 72/118 (61.02%), Postives = 84/118 (71.19%), Query Frame = 1
BLAST of Spo19930.1 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 1.700e-31 Identity = 72/117 (61.54%), Postives = 82/117 (70.09%), Query Frame = 1
BLAST of Spo19930.1 vs. TAIR (Arabidopsis)
Match: AT1G62040.2 (Ubiquitin-like superfamily protein) HSP 1 Score: 138.7 bits (348), Expect = 1.900e-33 Identity = 73/118 (61.86%), Postives = 83/118 (70.34%), Query Frame = 1
BLAST of Spo19930.1 vs. TAIR (Arabidopsis)
Match: AT4G21980.2 (Ubiquitin-like superfamily protein) HSP 1 Score: 129.4 bits (324), Expect = 1.100e-30 Identity = 70/117 (59.83%), Postives = 80/117 (68.38%), Query Frame = 1
BLAST of Spo19930.1 vs. TAIR (Arabidopsis)
Match: AT4G16520.1 (Ubiquitin-like superfamily protein) HSP 1 Score: 128.6 bits (322), Expect = 1.900e-30 Identity = 69/117 (58.97%), Postives = 81/117 (69.23%), Query Frame = 1
BLAST of Spo19930.1 vs. TAIR (Arabidopsis)
Match: AT4G04620.1 (Ubiquitin-like superfamily protein) HSP 1 Score: 124.8 bits (312), Expect = 2.800e-29 Identity = 66/117 (56.41%), Postives = 78/117 (66.67%), Query Frame = 1
BLAST of Spo19930.1 vs. TAIR (Arabidopsis)
Match: AT2G05630.2 (Ubiquitin-like superfamily protein) HSP 1 Score: 120.2 bits (300), Expect = 6.900e-28 Identity = 63/107 (58.88%), Postives = 75/107 (70.09%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19930.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19930.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19930.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19930.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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