Spo19946 (gene) | SpinachBase

Overview


Name	Spo19946
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Non-specific lipid-transfer protein
Location	SpoScf_02260 : 77925 .. 79267 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGAAAATGCCATCCGGCATCCAACAACCAATGAGAAAAATACAAGCATTATTCAACAATTAACAACCAACTACCTAATTCATTTTAGCAAGCCACAGAGACAGAGTTTGACTTCCATTAGTTCACATCACACCTCGTAGGAACCCTCTATAAATAGAGCACTGAAACAAACTCACTAAACCACCAAGCAAAAGTGTAAACCAAACATTCCACAAACAAAAAAACCAAAAGAAAACAAAAACTCTATGGCTACCTCAGTTGTTGTGAAGTTAGGCTGTGCACTTGTTATGTGCATCATGGTTGCTGCACCACTTGGCGAGGCGGGCGTAAGCTGTGGAATGGTTTCGAGCGGACTTGCCCCGTGCATATCCTACCTTAAGGGAGGCGACGGACCAACGCAGGGTTGCTGCGATGGGATTAAAGCCCTTAACCAAGAAGCTGCCACCCCTGCTGATAAACAAACTGCATGCACGTGCTTGAAATCTGCTGCGAATTCCATTTCAGGAATTGACTACGGAAAGGCCGCTGCTCTCCCTGGAAAATGCAGTGTCAACATTCCTTATGCCATCTCCCCCACCACCGATTGCGACGCGTATATTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCGATCTCTCCCTTTTCTTTTAGTACGATAATATTTAACATTAAAACATATCCTAAACTCACCACCATAATATATTTCCTCCGTCTTTTAATACTCCCAACGTTTGTTAGTTACACGCATGTCAATGCACAACTTTAATTATTTATATCTTAAATTCTCTTTATGTAAAAATTATAAAAAGTTGATATTTTGAAAATATACATTAAGACGAATATAACAAGATCCCATATGATTATGTTTTATCTAATATAAAAAACACTAAGAATAGTCAAACTAGATTATATGAATAGTGGCAAAAGTCCAAACGTTGCGAGTATTAAAAAACGGAGCAAGTATATATTTTGTCTTCGATGGAGCGAAAATGTTTGTTTATATAACGAATCGTGTTATTTTTGCAGCATCCATTAACGGCCATAACAGGATAAGTCAGAAATGAAAGATGGAGCTGATCAAGCTAGTTACCTAGTATACTAGCTCATCTAGTAGAGTGTCCAATAAAATAAAGTGTTGACGAGATTCGATCTTAGATGAGTCACTTAATTGTTTTCCTAGTGTTAATTGTTGCGTAACATTGCACCTTTTGTACCTCAACTTTCTTATATGCAATTTCTACTACGTTTATCTTCCTTTGGCCAGTCGTTTTTTTTAATTAAGAACTATTTCCTCCGTCTCGTAATACTCGAAACAGTTTGATCATAACAAAGTTTAAT

mRNA sequence

GTAAGAAAATGCCATCCGGCATCCAACAACCAATGAGAAAAATACAAGCATTATTCAACAATTAACAACCAACTACCTAATTCATTTTAGCAAGCCACAGAGACAGAGTTTGACTTCCATTAGTTCACATCACACCTCGTAGGAACCCTCTATAAATAGAGCACTGAAACAAACTCACTAAACCACCAAGCAAAAGTGTAAACCAAACATTCCACAAACAAAAAAACCAAAAGAAAACAAAAACTCTATGGCTACCTCAGTTGTTGTGAAGTTAGGCTGTGCACTTGTTATGTGCATCATGGTTGCTGCACCACTTGGCGAGGCGGGCGTAAGCTGTGGAATGGTTTCGAGCGGACTTGCCCCGTGCATATCCTACCTTAAGGGAGGCGACGGACCAACGCAGGGTTGCTGCGATGGGATTAAAGCCCTTAACCAAGAAGCTGCCACCCCTGCTGATAAACAAACTGCATGCACGTGCTTGAAATCTGCTGCGAATTCCATTTCAGGAATTGACTACGGAAAGGCCGCTGCTCTCCCTGGAAAATGCAGTGTCAACATTCCTTATGCCATCTCCCCCACCACCGATTGCGACGCCATCCATTAACGGCCATAACAGGATAAGTCAGAAATGAAAGATGGAGCTGATCAAGCTAGTTACCTAGTATACTAGCTCATCTAGTAGAGTGTCCAATAAAATAAAGTGTTGACGAGATTCGATCTTAGATGAGTCACTTAATTGTTTTCCTAGTGTTAATTGTTGCGTAACATTGCACCTTTTGTACCTCAACTTTCTTATATGCAATTTCTACTACGTTTATCTTCCTTTGGCCAGTCGTTTTTTTTAATTAAGAACTATTTCCTCCGTCTCGTAATACTCGAAACAGTTTGATCATAACAAAGTTTAAT

Coding sequence (CDS)

ATGGCTACCTCAGTTGTTGTGAAGTTAGGCTGTGCACTTGTTATGTGCATCATGGTTGCTGCACCACTTGGCGAGGCGGGCGTAAGCTGTGGAATGGTTTCGAGCGGACTTGCCCCGTGCATATCCTACCTTAAGGGAGGCGACGGACCAACGCAGGGTTGCTGCGATGGGATTAAAGCCCTTAACCAAGAAGCTGCCACCCCTGCTGATAAACAAACTGCATGCACGTGCTTGAAATCTGCTGCGAATTCCATTTCAGGAATTGACTACGGAAAGGCCGCTGCTCTCCCTGGAAAATGCAGTGTCAACATTCCTTATGCCATCTCCCCCACCACCGATTGCGACGCCATCCATTAA

Protein sequence

MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo19946.1	Spo19946.1	mRNA

Homology

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BLAST of Spo19946.1 vs. NCBI nr
Match: gi|902100652|gb|KNA03505.1| (hypothetical protein SOVF_208550 [Spinacia oleracea])

HSP 1 Score: 235.7 bits (600), Expect = 4.100e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA
Sbjct: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH
Sbjct: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 118

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BLAST of Spo19946.1 vs. NCBI nr
Match: gi|731344617|ref|XP_010683516.1| (PREDICTED: non-specific lipid-transfer protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 163.3 bits (412), Expect = 2.600e-37
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MA+S  VK  CALVMC+MVAAPL EA ++CG+V+S LAPCI YL+G  GP+ GCC GIK+
Sbjct: 1   MASSAFVKFTCALVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGPSAGCCGGIKS 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LN  AA+PAD++TACTCLKSAA SI GI+YGKAA+LP +C V++PYAISP T+C+AIH
Sbjct: 61  LNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117

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BLAST of Spo19946.1 vs. NCBI nr
Match: gi|128392|sp|P10976.2|NLTP_SPIOL (RecName: Full=Non-specific lipid-transfer protein; Short=LTP; AltName: Full=Phospholipid transfer protein; Short=PLTP; Flags: Precursor)

HSP 1 Score: 161.4 bits (407), Expect = 9.700e-37
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MA+S V+KL CA+++CI+VAAP  EAG++CGMVSS LAPCI YLKGG     GCC GIKA
Sbjct: 1   MASSAVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGP-LGGGCCGGIKA 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LN  AAT  D++TAC CLKSAAN+I GI+YGKAA LPG C V+IPYAISP+T+C+A+H
Sbjct: 61  LNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAVH 117

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BLAST of Spo19946.1 vs. NCBI nr
Match: gi|2497734|sp|Q43748.1|NLTP_BETVU (RecName: Full=Non-specific lipid-transfer protein; Short=LTP; Flags: Precursor)

HSP 1 Score: 161.0 bits (406), Expect = 1.300e-36
Identity = 79/118 (66.95%), Postives = 98/118 (83.05%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MA+S  VK  CALVMC+MVAAPL EA ++CG+V+S LAPCI YL+G  GP+  CC GIK+
Sbjct: 1   MASSAFVKFTCALVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGPSAACCGGIKS 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LN  AA+PAD++TACTCLKSAA SI GI+YGKAA+LP +C V++PYAISP T+C+AIH
Sbjct: 61  LNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117

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BLAST of Spo19946.1 vs. NCBI nr
Match: gi|291621319|dbj|BAI94497.1| (lipid transfer protein [Dianthus caryophyllus])

HSP 1 Score: 140.2 bits (352), Expect = 2.300e-30
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 1

		  
Query: 2   ATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKAL 61
           ++S + K+ CA+++CI++ AP     ++CG VS  LA CISYLKG  GP+  CC GIK L
Sbjct: 3   SSSAMRKVACAMILCIVMTAPYATEALTCGQVSGSLASCISYLKGAPGPSGACCGGIKRL 62

Query: 62  NQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           N  A TP D++TAC CLKSAA +ISGI+YG A ALPGKC V+IPY ISP TDC  +H
Sbjct: 63  NGMAQTPPDRKTACGCLKSAAAAISGINYGLANALPGKCGVSIPYPISPNTDCSRVH 119

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BLAST of Spo19946.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8B3_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea GN=SOVF_208550 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.800e-59
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA
Sbjct: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH
Sbjct: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 118

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BLAST of Spo19946.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYH3_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g157270 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.800e-37
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MA+S  VK  CALVMC+MVAAPL EA ++CG+V+S LAPCI YL+G  GP+ GCC GIK+
Sbjct: 1   MASSAFVKFTCALVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGPSAGCCGGIKS 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LN  AA+PAD++TACTCLKSAA SI GI+YGKAA+LP +C V++PYAISP T+C+AIH
Sbjct: 61  LNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117

[Close]

BLAST of Spo19946.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9K1_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea GN=SOVF_204070 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.800e-37
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MA+S V+KL CA+++CI+VAAP  EAG++CGMVSS LAPCI YLKGG     GCC GIKA
Sbjct: 1   MASSAVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGP-LGGGCCGGIKA 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LN  AAT  D++TAC CLKSAAN+I GI+YGKAA LPG C V+IPYAISP+T+C+A+H
Sbjct: 61  LNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAVH 117

[Close]

BLAST of Spo19946.1 vs. UniProtKB/TrEMBL
Match: D4QD75_DIACA (Non-specific lipid-transfer protein OS=Dianthus caryophyllus GN=DcLTP2 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.600e-30
Identity = 67/117 (57.26%), Postives = 85/117 (72.65%), Query Frame = 1

		  
Query: 2   ATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKAL 61
           ++S + K+ CA+++CI++ AP     ++CG VS  LA CISYLKG  GP+  CC GIK L
Sbjct: 3   SSSAMRKVACAMILCIVMTAPYATEALTCGQVSGSLASCISYLKGAPGPSGACCGGIKRL 62

Query: 62  NQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           N  A TP D++TAC CLKSAA +ISGI+YG A ALPGKC V+IPY ISP TDC  +H
Sbjct: 63  NGMAQTPPDRKTACGCLKSAAAAISGINYGLANALPGKCGVSIPYPISPNTDCSRVH 119

[Close]

BLAST of Spo19946.1 vs. UniProtKB/TrEMBL
Match: I1T4C4_GOSGO (Non-specific lipid-transfer protein OS=Gossypium gossypioides PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.600e-30
Identity = 67/116 (57.76%), Postives = 89/116 (76.72%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPT-QGCCDGIK 60
           M++S+ +KL C +V+C+++ APL +  V+CG V++ LAPCI+YL+G  GP  QGCC GIK
Sbjct: 1   MSSSMSLKLACVVVLCMVLGAPLAQGAVTCGQVTTSLAPCITYLRGKGGPVPQGCCGGIK 60

Query: 61  ALNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCD 116
           +LN  A T  D+Q AC C+KSAA  ISGI+YG A+ LPGKC VNIPY ISP+TDC+
Sbjct: 61  SLNSAAQTTPDRQAACKCIKSAAAGISGINYGIASGLPGKCGVNIPYKISPSTDCN 116

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BLAST of Spo19946.1 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 6.100e-39
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MA+S V+KL CA+++CI+VAAP  EAG++CGMVSS LAPCI YLKGG     GCC GIKA
Sbjct: 1   MASSAVIKLACAVLLCIVVAAPYAEAGITCGMVSSKLAPCIGYLKGGP-LGGGCCGGIKA 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LN  AAT  D++TAC CLKSAAN+I GI+YGKAA LPG C V+IPYAISP+T+C+A+H
Sbjct: 61  LNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAVH 117

[Close]

BLAST of Spo19946.1 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.000e-39
Identity = 79/118 (66.95%), Postives = 98/118 (83.05%), Query Frame = 1

		  
Query: 1   MATSVVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKA 60
           MA+S  VK  CALVMC+MVAAPL EA ++CG+V+S LAPCI YL+G  GP+  CC GIK+
Sbjct: 1   MASSAFVKFTCALVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGPSAACCGGIKS 60

Query: 61  LNQEAATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAIH 119
           LN  AA+PAD++TACTCLKSAA SI GI+YGKAA+LP +C V++PYAISP T+C+AIH
Sbjct: 61  LNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117

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BLAST of Spo19946.1 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.700e-31
Identity = 68/110 (61.82%), Postives = 82/110 (74.55%), Query Frame = 1

		  
Query: 8   KLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQEAAT 67
           K+ C +V C++V AP  E+ +SCG V+SGLAPC+ YL+ G GP  GCC G+K L   A T
Sbjct: 6   KIACFVVFCMVVVAPHAES-LSCGEVTSGLAPCLPYLE-GRGPLGGCCGGVKGLLGAAKT 65

Query: 68  PADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
           P D++TACTCLKSAANSI GID GKAA LPG C VNIPY ISP+TDC  +
Sbjct: 66  PEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTV 113

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BLAST of Spo19946.1 vs. ExPASy Swiss-Prot
Match: NLTP3_LENCU (Non-specific lipid-transfer protein 3 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.300e-30
Identity = 67/112 (59.82%), Postives = 82/112 (73.21%), Query Frame = 1

		  
Query: 7   VKLGC-ALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQEA 66
           + L C ALVMC++V AP+ EA VSCG V+  LAPCI YL GG GPT  CC G+K L   A
Sbjct: 5   MNLACVALVMCMVVIAPMAEAAVSCGTVTGDLAPCIPYLTGGAGPTDSCCAGVKKLLAAA 64

Query: 67  ATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
            T AD+Q AC CLK+AA +I+ ++ G AAALPGKC+VNIPY IS TT+C+ I
Sbjct: 65  PTTADRQAACNCLKTAAGNINNLNPGNAAALPGKCNVNIPYKISTTTNCNTI 116

[Close]

BLAST of Spo19946.1 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.400e-29
Identity = 66/113 (58.41%), Postives = 83/113 (73.45%), Query Frame = 1

		  
Query: 5   VVVKLGCALVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQE 64
           +V K+ C +V+C++V AP  EA +SCG V SGLAPC+ YL+ G GP   CC G+K L   
Sbjct: 3   MVGKIACFVVLCMVVVAPHAEA-LSCGQVQSGLAPCLPYLQ-GRGPLGSCCGGVKGLLGA 62

Query: 65  AATPADKQTACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
           A + +D++TACTCLKSAAN+I GID GKAA LPG C VNIPY ISP+TDC  +
Sbjct: 63  AKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKV 113

[Close]

BLAST of Spo19946.1 vs. TAIR (Arabidopsis)
Match: AT2G38530.1 (lipid transfer protein 2)

HSP 1 Score: 101.7 bits (252), Expect = 3.200e-22
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = 1

		  
Query: 6   VVKLGCALVMCIMVAAPL-GEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQE 65
           V+KL C ++ C++VA P+   A +SCG V+  LA CI+YL  G   TQGCC+G+  L   
Sbjct: 4   VMKLACMVLACMIVAGPITANALMSCGTVNGNLAGCIAYLTRGAPLTQGCCNGVTNLKNM 63

Query: 66  AATPADKQTACTCLKSAANSIS-GIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
           A+T  D+Q AC CL+SAA ++  G++  +AA LP  C VNIPY IS +T+C+ +
Sbjct: 64  ASTTPDRQQACRCLQSAAKAVGPGLNTARAAGLPSACKVNIPYKISASTNCNTV 117

[Close]

BLAST of Spo19946.1 vs. TAIR (Arabidopsis)
Match: AT2G38540.1 (lipid transfer protein 1)

HSP 1 Score: 99.8 bits (247), Expect = 1.200e-21
Identity = 52/114 (45.61%), Postives = 73/114 (64.04%), Query Frame = 1

		  
Query: 6   VVKLGCALVMCIMVAAPL-GEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQE 65
           V+KL C L+ C++VA P+   A +SCG V+S LA CI Y+  G      CC G+K LN  
Sbjct: 4   VMKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSI 63

Query: 66  AATPADKQTACTCLKSAANSI-SGIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
           A T  D+Q AC C++ AA ++ SG++ G+AA +P  C VNIPY IS +T+C  +
Sbjct: 64  AKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117

[Close]

BLAST of Spo19946.1 vs. TAIR (Arabidopsis)
Match: AT5G59320.1 (lipid transfer protein 3)

HSP 1 Score: 96.3 bits (238), Expect = 1.400e-20
Identity = 49/105 (46.67%), Postives = 67/105 (63.81%), Query Frame = 1

		  
Query: 13  LVMCIMVAAPLGEAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQEAATPADKQ 72
           L +CI+ +    +A +SCG V+  LAPC +YL  G      CC G+K LN  A T  D+Q
Sbjct: 13  LTVCIVASV---DAAISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQ 72

Query: 73  TACTCLKSAANSISGIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
            AC C++S A SISG++   A+ LPGKC V+IPY IS +T+C+ I
Sbjct: 73  QACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114

[Close]

BLAST of Spo19946.1 vs. TAIR (Arabidopsis)
Match: AT3G51600.1 (lipid transfer protein 5)

HSP 1 Score: 91.3 bits (225), Expect = 4.400e-19
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 1

		  
Query: 6   VVKLGCALVMCIMVAAPLG-EAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQE 65
           ++KL   +++C++V AP+  EA +SCG V+  L  C +YL  G    +GCC G++ LN  
Sbjct: 4   LLKLSTLVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSL 63

Query: 66  AATPADKQTACTCLKSAANSI-SGIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
           A T  D+Q AC C++ AA ++ S ++ G+AA LPG C V I Y IS  T+C+ +
Sbjct: 64  ARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTV 117

[Close]

BLAST of Spo19946.1 vs. TAIR (Arabidopsis)
Match: AT5G01870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein)

HSP 1 Score: 88.6 bits (218), Expect = 2.800e-18
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = 1

		  
Query: 13  LVMCIMVAAPLG---EAGVSCGMVSSGLAPCISYLKGGDGPTQGCCDGIKALNQEAATPA 72
           L +C+++A+      EA +SC  V + L PC+ Y+  G      CC+GI+ L+++A + +
Sbjct: 6   LPLCLLLASIFAWGSEAAISCNAVQANLYPCVVYVVQGGAIPYSCCNGIRMLSKQATSAS 65

Query: 73  DKQTACTCLKSAAN--SISGIDYGKAAALPGKCSVNIPYAISPTTDCDAI 118
           DKQ  C C+KS     S S I   KAAALPGKC V +PY I P+T+C++I
Sbjct: 66  DKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSI 115

The following BLAST results are available for this feature:

BLAST of Spo19946.1 vs. NCBI nr
BLAST of Spo19946.1 vs. UniProtKB/TrEMBL
BLAST of Spo19946.1 vs. ExPASy Swiss-Prot
BLAST of Spo19946.1 vs. TAIR (Arabidopsis)

BLAST of Spo19946.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902100652\|gb\|KNA03505.1\|	4.1e-59	100.	hypothetical protein SOVF_2085...	[more]
gi\|731344617\|ref\|XP_010683516.1\|	2.6e-37	67.8	PREDICTED: non-specific lipid-...	[more]
gi\|128392\|sp\|P10976.2\|NLTP_SPIOL	9.7e-37	67.8	RecName: Full=Non-specific lip...	[more]
gi\|2497734\|sp\|Q43748.1\|NLTP_BETVU	1.3e-36	66.9	RecName: Full=Non-specific lip...	[more]
gi\|291621319\|dbj\|BAI94497.1\|	2.3e-30	57.2	lipid transfer protein [Dianth...	[more]

BLAST of Spo19946.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9Q8B3_SPIOL	2.8e-59	100.	Non-specific lipid-transfer pr...	[more]
A0A0J8BYH3_BETVU	1.8e-37	67.8	Non-specific lipid-transfer pr...	[more]
A0A0K9Q9K1_SPIOL	6.8e-37	67.8	Non-specific lipid-transfer pr...	[more]
D4QD75_DIACA	1.6e-30	57.2	Non-specific lipid-transfer pr...	[more]
I1T4C4_GOSGO	1.6e-30	57.7	Non-specific lipid-transfer pr...	[more]

BLAST of Spo19946.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
NLTP_SPIOL	6.1e-39	67.8	Non-specific lipid-transfer pr...	[more]
NLTP_BETVU	8.0e-39	66.9	Non-specific lipid-transfer pr...	[more]
NLTP2_SOLLC	4.7e-31	61.8	Non-specific lipid-transfer pr...	[more]
NLTP3_LENCU	2.3e-30	59.8	Non-specific lipid-transfer pr...	[more]
NLTP2_TOBAC	3.4e-29	58.4	Non-specific lipid-transfer pr...	[more]

BLAST of Spo19946.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT2G38530.1	3.2e-22	46.4	lipid transfer protein 2	[more]
AT2G38540.1	1.2e-21	45.6	lipid transfer protein 1	[more]
AT5G59320.1	1.4e-20	46.6	lipid transfer protein 3	[more]
AT3G51600.1	4.4e-19	41.2	lipid transfer protein 5	[more]
AT5G01870.1	2.8e-18	41.8	Bifunctional inhibitor/lipid-t...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000528	Plant lipid transfer protein/Par allergen	PRINTS	PR00382	LIPIDTRNSFER	coord: 105..116 score: 5.5E-30coord: 87..104 score: 5.5E-30coord: 29..45 score: 5.5E-30coord: 49..63 score: 5.5E-30coord: 70..85 score: 5.5
IPR000528	Plant lipid transfer protein/Par allergen	PROSITE	PS00597	PLANT_LTP	coord: 96..117 scor
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF00234	Tryp_alpha_amyl	coord: 31..114 score: 2.2
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	SMART	SM00499	aai_6	coord: 30..114 score: 1.6
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	unknown	SSF47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 28..116 score: 1.09
None	No IPR available	GENE3D	1.10.110.10		coord: 28..117 score: 7.7
None	No IPR available	PANTHER	PTHR33076	FAMILY NOT NAMED	coord: 1..117 score: 3.3
None	No IPR available	PANTHER	PTHR33076:SF11	BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED	coord: 1..117 score: 3.3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism
biological_process	GO:0006869	lipid transport
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0006520	cellular amino acid metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo27130	0.71	Barchart \| Table
Spo23404	0.68	Barchart \| Table
Spo18272	0.67	Barchart \| Table
Spo30001	0.66	Barchart \| Table
Spo00194	0.66	Barchart \| Table
Spo23225	0.65	Barchart \| Table
Spo06064	0.65	Barchart \| Table