Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACCAGCTAGTAGCCATTGTGTGATATGCTCATTAAGTAGTCATTAGTGATTAATCAATTAGTGATCAAATTCCACTACTTAGATTTTAGTACAAATCAATCACCCAAGCCAAAAGTATCTTCCACTATGAACTTTATGAAATCTAGTTCAAAAACCTACCAAATGACAAACACACTAGAGTACTAAACACAAACGAGTAACCTTCCTTGTTTTGCATTTCCAGTTCCGACCTTCTCTCTTCCCGAATCTATCTCCTGTCCGAAATGCCATTACACTCCCTCCTCCCACTCATCACTACAACACACACACTCTTCCTCATTTTCTCTCTCCTCCGCTCCCCCACCTTCTCCACCGCCCACTACAACCCATCACCATCCACCCCCTCCCCTCTCATCTCCGAATGGGAGTCAGCGCGTGCAACATATTATGCTGGTACTAACCCACGCGACATTGTCGGTGGCGCATGCGGGTATGGCGATCTCGACAAAGCCGGGTATGGTAAAGCGACTGTCGGATTAAGTACTGCTTTGTTTTCCAAAGGACAGATCTGCGGTGCTTGTTATGAAGTCCGGTGTGTTGAGGATCTTCGGAATTGTATTCCGGGTACATCTATTCTTGTTACTGCTACTAATTTTTGTGCCCCCAATTATGGATTTACAGCGGATGGTGGTGGCCGTTGTAATCCTCCTAATAAGCATTTTGTTCTTCCCATTGAAGCTTTTGAGAAGATCGCCCTTTGGAAGGCTGGTAATATGGCTATTCAATACCGAAGGTACATAATCTTCATTCTCTCTCTTTTACTATTTTGGCTATTTTTATTTTAATGAATCACAGGTCTAGCTCATTGAAGTACATGTGCATCGCCCTCAATACTTTAACAAACTAAACTAGTTGGCGTTGTTCAGGTGTTAATTTTGATTTTGATGTATGTTGAATTGATTCAGGTGTTACCCGATTTATAAACTTTTGTGTGTGGTTGTTGGGAATTTATGAGATGCTATAGTCATCAATTGGCATGTGCTATATTGTAATTGATCAAGATGTAGAATGTACAAGGTAGAATTTCTTTGAACCTGAGTTCGAAACTTCTTGGGCTATGTTACTTCACTTGAAATACTGAAAAGCGAAAACCCCTTATTTGTAATTACTTTAAATTGAGCTTGGTTGCAGTTATCTGGCCTTATTTGAGATGAGTTAGAAAACAAATGTATGCATAGTGATACTGCAAAGAGAGGAGCCCTTAGATGTAAAATAAGCATCTCATTTTCGATATTGCAACATATAAGGAATTAGTGACACATTTGAATGGATGAATTGATGGCATTTGGTTGCCATATGGTGTAGCTTTTATCCATCTATTGCTTGTGGAACACTGGACTTCGAATAAATTTCGGGTTAGGGTTGGGTAATTCCAAGTTAGAAGTCAGTCAAGTCAGTAGTGTAACTCCTGGTAGATTGCCATACCTGAAGTAAATGTTTATCCACAAACACGGGCTTGCTTCAAAGACTTCAAATGAAGTTTTCACATTTGATTGATTTGACCAAAATGTTTTTTTTGCCTGTATGCTTGGTGCACACACGTGGTTAACAAAAACTTCTATTGCCAATGAGTATATGATAATTTCATGTTCCATACAAAACTGGACAAAGGATTATGAGTAAAAATCTTTATAGTTTTTTCTGTATGGTTATTACTTAGGCACTTTTTTGGATCAATCCTGACTCCCCGGGTATGGTTTTATGGGACTCTTTACGGTTGCATCGTCTGGCTGGAATGGGTTTTGTGCTTCTTTTCCTATTCTGTTCTGAGCAGGGCCTTCTATATTCTTCGGGCGTTGTGTCAAATTGTCAATTAGGATGCTATCTATCAAATACTCTGTATTTTACTTCATCCAAATAATAATAAGGTGTGAAGTGTTGGGGTGCTTGAAAAAGTAATCAATTTCCTAAAATTGAAGTGGATAGTGATCTGAGCACCCAAGCTACCCATACCCCTTATAAACCGTTATCAAGGATATTGGGCTAATACCTCGTATTATCTTAAATAGTTAAATCCTAAATCTTTGTTTTTTTTACGGGGGATCAAATACTAAACCTTGAAGGGTTGGGACAAGTATTGTTTTCTTATGGATGGAGCTACAATAGTACAAGTAGTATGTTACTGTTGTGTTTGTTGGATAAATGTTGAATTAATTCAGGTGTTGCCCGGACATCTTATTAAGGTAGAGAAAAGAAGTTTGGTGTGAGTGGTTGTTGGGAATTTATGAGATGTTATAGTCGTCAATTGCATGTTCTATATTGTAATTGATCAAGATGTAGATTGTAGCATTCCTTTGGACCTCGGCTCGAAACTTCTTCACTTGAAAGGCTGAAAACCGCTTATTTGAAATTAACACTTATCTGGGGTTTTTTGAGCTGAGAAAGCAAACAAAAGTGTGGAGAATGATACTATACACTTAAGAGGATATAGGATTTAAAGGAGAGGCGCATCTCATTTACGACTGGCAAAGAATAAGGAGGGTGTCAAATTAGTGAAACATGTGATTCGATAAATTGATGACGTTTGGTTGGTGCATGGCGTAGCTTTTGTCCACCAATTGCTTGTGGAACATAACATTTTGGAATAAAGTTCGGGTTAGAGTTGAGTAATTCGGACTTGGTAGAAGTCCTGAAGGAGATGTCTATCCTTAAAGACGGGATTGCTTCAAATGAAGTTTTTACATTTGACAAAAATAGTTTTTTTGCCTTCAAATGCTTGGTGCACACACATAGTAACTAAAAGTTGTATTGCATATGGTTAGTATGTGATAGAGATAACGAGAAAAATAGTAAAATGATCTTTATAGTTTTTCTTTATGGTTATGACTTATGAGGCACTCTCTTGAATCCTGGAATTACACCCCCGACTCCCTGAGTATGGTTTTGTGGAACTCCTTAAGGTTGCATCCTGTGATTGGAATATGCTTAGTGTTTCTTTCCAGTTCTGCTGTAGGCAGTCCCTTGTATATTCTCTAGGGCTTATGCCATCTTATACTGTATCTTATACTGTGTGCATGGAAGATGTTGGTGGTCTCCTCTTTGAGAATGGTGTTTCCTCAATCCAGTGTTTTGAAGTGTTTGGTGGTTGTTTGGTTTTGAGCAGGATGAGATGCAGAAAGGAAGGAGGGATTCGGTTTGCCATTGATGGATCTGGAGTATTTATATCTGTTCTGGTGAGCAATGTTGCAGGTGCAGGTGATGTTGTTGGTCTAAAAGTAAAGGGATCACAAACTGGATGGCTTCCTATGTCAAGGAATTGGGGCCAGAATTGGATACTGAATGCCAATTTGAAAAACCAACCTCTTTCATTTGAGGTAACTACGAGTGATGGGGCGATTCTCATGTCATACAATGTTGCTCCTAAGAGTTGGAAAATTGGCCAAACTTTTGATGGAAAACAATTTGATTGAGGCCTATGATAGATAGATATGTCATCTTATACTTGTAGTTGCTGAGTAGAATTCAGTTGTACGAGCTACCACCTTCATTAGTTAATAGTTAGGTTAAAACTACGAATGAGCCAAAGGCGTAGGGTAAATTTGTCTGTATCATTATTGTATCATGTGGATGTACACTATTCTATTCCCCAGTTTTGAGATAAAGAAATTATTGGCTTGAAGCCATCTTTCATCTTTTTTAGCTCATTTGTCCTTAGCATTACAAGTTTACAGCCTGGAATTCGAGCTACTGCTTTCTCCACTGAAGCCGAGTTTAACGTGTGCTTTAAAGCTTTGATATGACATTGATCAAGGTATCAAGGGTAATTGTTAACTCATATATGCTGCTGATATTGATATACCC ACCAGCTAGTAGCCATTGTGTGATATGCTCATTAAGTAGTCATTAGTGATTAATCAATTAGTGATCAAATTCCACTACTTAGATTTTAGTACAAATCAATCACCCAAGCCAAAAGTATCTTCCACTATGAACTTTATGAAATCTAGTTCAAAAACCTACCAAATGACAAACACACTAGAGTACTAAACACAAACGAGTAACCTTCCTTGTTTTGCATTTCCAGTTCCGACCTTCTCTCTTCCCGAATCTATCTCCTGTCCGAAATGCCATTACACTCCCTCCTCCCACTCATCACTACAACACACACACTCTTCCTCATTTTCTCTCTCCTCCGCTCCCCCACCTTCTCCACCGCCCACTACAACCCATCACCATCCACCCCCTCCCCTCTCATCTCCGAATGGGAGTCAGCGCGTGCAACATATTATGCTGGTACTAACCCACGCGACATTGTCGGTGGCGCATGCGGGTATGGCGATCTCGACAAAGCCGGGTATGGTAAAGCGACTGTCGGATTAAGTACTGCTTTGTTTTCCAAAGGACAGATCTGCGGTGCTTGTTATGAAGTCCGGTGTGTTGAGGATCTTCGGAATTGTATTCCGGGTACATCTATTCTTGTTACTGCTACTAATTTTTGTGCCCCCAATTATGGATTTACAGCGGATGGTGGTGGCCGTTGTAATCCTCCTAATAAGCATTTTGTTCTTCCCATTGAAGCTTTTGAGAAGATCGCCCTTTGGAAGGCTGGTAATATGGCTATTCAATACCGAAGGATGAGATGCAGAAAGGAAGGAGGGATTCGGTTTGCCATTGATGGATCTGGAGTATTTATATCTGTTCTGGTGAGCAATGTTGCAGGTGCAGGTGATGTTGTTGGTCTAAAAGTAAAGGGATCACAAACTGGATGGCTTCCTATGTCAAGGAATTGGGGCCAGAATTGGATACTGAATGCCAATTTGAAAAACCAACCTCTTTCATTTGAGGTAACTACGAGTGATGGGGCGATTCTCATGTCATACAATGTTGCTCCTAAGAGTTGGAAAATTGGCCAAACTTTTGATGGAAAACAATTTGATTGAGGCCTATGATAGATAGATATGTCATCTTATACTTGTAGTTGCTGAGTAGAATTCAGTTGTACGAGCTACCACCTTCATTAGTTAATAGTTAGGTTAAAACTACGAATGAGCCAAAGGCGTAGGGTAAATTTGTCTGTATCATTATTGTATCATGTGGATGTACACTATTCTATTCCCCAGTTTTGAGATAAAGAAATTATTGGCTTGAAGCCATCTTTCATCTTTTTTAGCTCATTTGTCCTTAGCATTACAAGTTTACAGCCTGGAATTCGAGCTACTGCTTTCTCCACTGAAGCCGAGTTTAACGTGTGCTTTAAAGCTTTGATATGACATTGATCAAGGTATCAAGGGTAATTGTTAACTCATATATGCTGCTGATATTGATATACCC ATGCCATTACACTCCCTCCTCCCACTCATCACTACAACACACACACTCTTCCTCATTTTCTCTCTCCTCCGCTCCCCCACCTTCTCCACCGCCCACTACAACCCATCACCATCCACCCCCTCCCCTCTCATCTCCGAATGGGAGTCAGCGCGTGCAACATATTATGCTGGTACTAACCCACGCGACATTGTCGGTGGCGCATGCGGGTATGGCGATCTCGACAAAGCCGGGTATGGTAAAGCGACTGTCGGATTAAGTACTGCTTTGTTTTCCAAAGGACAGATCTGCGGTGCTTGTTATGAAGTCCGGTGTGTTGAGGATCTTCGGAATTGTATTCCGGGTACATCTATTCTTGTTACTGCTACTAATTTTTGTGCCCCCAATTATGGATTTACAGCGGATGGTGGTGGCCGTTGTAATCCTCCTAATAAGCATTTTGTTCTTCCCATTGAAGCTTTTGAGAAGATCGCCCTTTGGAAGGCTGGTAATATGGCTATTCAATACCGAAGGATGAGATGCAGAAAGGAAGGAGGGATTCGGTTTGCCATTGATGGATCTGGAGTATTTATATCTGTTCTGGTGAGCAATGTTGCAGGTGCAGGTGATGTTGTTGGTCTAAAAGTAAAGGGATCACAAACTGGATGGCTTCCTATGTCAAGGAATTGGGGCCAGAATTGGATACTGAATGCCAATTTGAAAAACCAACCTCTTTCATTTGAGGTAACTACGAGTGATGGGGCGATTCTCATGTCATACAATGTTGCTCCTAAGAGTTGGAAAATTGGCCAAACTTTTGATGGAAAACAATTTGATTGA MPLHSLLPLITTTHTLFLIFSLLRSPTFSTAHYNPSPSTPSPLISEWESARATYYAGTNPRDIVGGACGYGDLDKAGYGKATVGLSTALFSKGQICGACYEVRCVEDLRNCIPGTSILVTATNFCAPNYGFTADGGGRCNPPNKHFVLPIEAFEKIALWKAGNMAIQYRRMRCRKEGGIRFAIDGSGVFISVLVSNVAGAGDVVGLKVKGSQTGWLPMSRNWGQNWILNANLKNQPLSFEVTTSDGAILMSYNVAPKSWKIGQTFDGKQFD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo19964.1 vs. NCBI nr
Match: gi|902239521|gb|KNA25637.1| (hypothetical protein SOVF_004720 [Spinacia oleracea]) HSP 1 Score: 563.5 bits (1451), Expect = 2.000e-157 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo19964.1 vs. NCBI nr
Match: gi|731328786|ref|XP_010675241.1| (PREDICTED: expansin-A13 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 469.9 bits (1208), Expect = 2.900e-129 Identity = 231/274 (84.31%), Postives = 249/274 (90.88%), Query Frame = 1
BLAST of Spo19964.1 vs. NCBI nr
Match: gi|823122508|ref|XP_012471295.1| (PREDICTED: expansin-A13 [Gossypium raimondii]) HSP 1 Score: 413.7 bits (1062), Expect = 2.500e-112 Identity = 188/259 (72.59%), Postives = 221/259 (85.33%), Query Frame = 1
BLAST of Spo19964.1 vs. NCBI nr
Match: gi|970011492|ref|XP_015066660.1| (PREDICTED: expansin-A13-like [Solanum pennellii]) HSP 1 Score: 413.3 bits (1061), Expect = 3.300e-112 Identity = 189/258 (73.26%), Postives = 217/258 (84.11%), Query Frame = 1
BLAST of Spo19964.1 vs. NCBI nr
Match: gi|698526548|ref|XP_009760108.1| (PREDICTED: expansin-A13-like [Nicotiana sylvestris]) HSP 1 Score: 413.3 bits (1061), Expect = 3.300e-112 Identity = 189/260 (72.69%), Postives = 217/260 (83.46%), Query Frame = 1
BLAST of Spo19964.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S3E1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004720 PE=4 SV=1) HSP 1 Score: 563.5 bits (1451), Expect = 1.400e-157 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo19964.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FBX0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g084770 PE=4 SV=1) HSP 1 Score: 469.9 bits (1208), Expect = 2.000e-129 Identity = 231/274 (84.31%), Postives = 249/274 (90.88%), Query Frame = 1
BLAST of Spo19964.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PNT7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G083300 PE=4 SV=1) HSP 1 Score: 413.7 bits (1062), Expect = 1.700e-112 Identity = 188/259 (72.59%), Postives = 221/259 (85.33%), Query Frame = 1
BLAST of Spo19964.1 vs. UniProtKB/TrEMBL
Match: A0A061EE82_THECC (Alpha-expansin 13, putative OS=Theobroma cacao GN=TCM_017901 PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 3.000e-112 Identity = 189/258 (73.26%), Postives = 219/258 (84.88%), Query Frame = 1
BLAST of Spo19964.1 vs. UniProtKB/TrEMBL
Match: V4S857_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012472mg PE=4 SV=1) HSP 1 Score: 412.9 bits (1060), Expect = 3.000e-112 Identity = 192/264 (72.73%), Postives = 222/264 (84.09%), Query Frame = 1
BLAST of Spo19964.1 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2) HSP 1 Score: 392.5 bits (1007), Expect = 3.700e-108 Identity = 182/266 (68.42%), Postives = 217/266 (81.58%), Query Frame = 1
BLAST of Spo19964.1 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2) HSP 1 Score: 343.2 bits (879), Expect = 2.600e-93 Identity = 154/253 (60.87%), Postives = 196/253 (77.47%), Query Frame = 1
BLAST of Spo19964.1 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 2.100e-71 Identity = 127/225 (56.44%), Postives = 159/225 (70.67%), Query Frame = 1
BLAST of Spo19964.1 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1) HSP 1 Score: 268.9 bits (686), Expect = 6.200e-71 Identity = 124/226 (54.87%), Postives = 158/226 (69.91%), Query Frame = 1
BLAST of Spo19964.1 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 4.000e-70 Identity = 125/224 (55.80%), Postives = 155/224 (69.20%), Query Frame = 1
BLAST of Spo19964.1 vs. TAIR (Arabidopsis)
Match: AT3G03220.1 (expansin A13) HSP 1 Score: 392.5 bits (1007), Expect = 2.100e-109 Identity = 182/266 (68.42%), Postives = 217/266 (81.58%), Query Frame = 1
BLAST of Spo19964.1 vs. TAIR (Arabidopsis)
Match: AT2G37640.1 (Barwin-like endoglucanases superfamily protein) HSP 1 Score: 270.4 bits (690), Expect = 1.200e-72 Identity = 127/225 (56.44%), Postives = 159/225 (70.67%), Query Frame = 1
BLAST of Spo19964.1 vs. TAIR (Arabidopsis)
Match: AT5G56320.1 (expansin A14) HSP 1 Score: 268.9 bits (686), Expect = 3.500e-72 Identity = 124/226 (54.87%), Postives = 158/226 (69.91%), Query Frame = 1
BLAST of Spo19964.1 vs. TAIR (Arabidopsis)
Match: AT3G55500.1 (expansin A16) HSP 1 Score: 266.2 bits (679), Expect = 2.300e-71 Identity = 123/225 (54.67%), Postives = 155/225 (68.89%), Query Frame = 1
BLAST of Spo19964.1 vs. TAIR (Arabidopsis)
Match: AT5G02260.1 (expansin A9) HSP 1 Score: 261.2 bits (666), Expect = 7.300e-70 Identity = 123/225 (54.67%), Postives = 154/225 (68.44%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo19964.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo19964.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo19964.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo19964.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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