Spo20109 (gene)

Overview
NameSpo20109
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMitochondrial inner membrane translocase complex, subunit Tim44-related protein
LocationSpoScf_00437 : 441652 .. 446650 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATCAAACCGGTTTAAGTATTCAGGGAACTTCCTCTCAATTACGAACTCACAAAGGGTCCTCTTTAAACCCTTTCCTTCCCGCAAAACCCTTCTTTCCTCCCCAGCATTGTCCAATCTACATAACTCTATTTTGATCGAAAATGGCGCTTTTACGATCCAATGCTATTCGAAATTTATCAAAATTGTCTCGGATTCAACAACATTCCTTTGCGTAAGATTTTCATTTTCAATTTTTTCCCTCATTTTTGGGAACTATTTTGATTTATTTGATCCAAGATTCAATTTTTTGTAGTCTGGGAAGCTCAAGAAGTTACTCTAATGCTGTTATCAGTGGTACCAATTCTCAGTTCTATGCTTAATTTTTCTGCCATTTTGTCATAAGTTGTGAAATTTGATTTTGATGCTATTTTGGTTTAATTTTGTTTTTATATTAGTATAGTTGAAGATTTTAGTGCTAAGTTGTTTGTGGGATTAGGTAGGTTAAATTCATAGGGAATGACTGCTAAATGTGGAGGAAACATGGAATTCATTTCAAATGATGTAATTCAAATCCGGGAATTAATGTAATGTTTGGGAAATTTTAGGAATTCAAATTCCAGAATTTCCAATTTACCAAGTTGTTCGGAAAGTTCAGATTTCAACTGAAAGTTTAATGAAAAACAAAAAAGAAAATTTAATGATAAATCAATTACATGGCAAAGTTAGTTTGATCCCAATTGAAAAAATTATTAGCAGAAGGCAGAAGCATCAATTCTTGATAAAAAAAAAGTGGGAAAATAAACCCTAAGTCTATAACTTTCCAAAATAACTCTCAATAACAAAGCCCAAAGACCAGATTCTAATTGTATTTTCTTCAATTCAATATGAAATCGCCATTTTCTTTTGGTCTTCTATCTCTTTTCCTCCATATTTCTCTCTCCTTGAACTCCAATTAATGGCCATACAGAGGAACAAGAATTTCTAATTTAGTGTCGGTGGAAATGGTTGTCTTGATGGTGGCGGAGGTAGTGGTGGTGGTAGTAGAGGAGGAGAAGAAGAGGAAGAGAGTAGGTACAAGAGAGGAGAGAGAAAGTGCCAGAGAATTTTGAGAAGTCCTGTATGTTTTTCAAGTGATAGAGAATAGTTGAAACTTGCTGCTCAATGAGTAATTTCAAATGACACGTTAGAATATGTCATTTATAATTACTTAATTTTGGGCCTTTTGTAAATACCTTTGGAATTGGGCCAATTCCAAAATTTCAAATTCTCTGCTTCCCAAACAGAGGATTTGCCCTATCCAAACATAGCATCAAGGGATTTTAAGTTTTCCGAAGTTGGTAATCGAGTTCAAATATGTTGTTGGATGGGCGGTCAGGCGTAATTTTATGGCAAGTGCGATTGATATTTGAGAATACTTGAAATAAAATGGGTGGTTCTAGTTTGAGCAAACTTGTTCCTGGGTTCTGTATGTATGCTCTTTAGTTATAAAGATTCTGCCTTTGAAAAAATTTATGTAGCATAACAAAATCAATATGCTCCCGTGTGATTTCAACCACCCTGCTCTTCTGTTTTGCAAACACTGAGAGAGTGAGAGTAGATGATAATTTCGAACTCCACTAGAATGTTGATTCTGTCAAGTAGAAATTTATACTTACATGATTCTTTTGGGTGTTATTAGGGCCTCAAGGTAACTCCTGCAGCTCAAATTCTTTTTCATACAAGAGTCATAACTATCCACTGATTTGTGGCAGAGCAGGGGTGCTTCGTTCTTCGATGGTAGAAACCTTGCACTTAGTGTATTATTTTGTCTGTTTTCTGAATTCATAAAAGAATTTTTAATCTGTTTTTGTCTGATTTCCTTACATGATCATGACTTGTTATACGTTTTGTGACTTTTCTCTCATCCTTTGTTTCAGGCTGCTGAGTTGTCAGTGTTTTTATGTGAAGCTAGGTCATTGTCAACAAAAGCAAAAGCCCCTCCTCAAGGACGGGCAATGGTAAAGTTTCTTCCACTCGTAGTAATTTTCTCCCTGGTGGCACTAGTTAACTGTACGTCTGTCTCTGCTACTTTATTGAAGAGCATCACATGGGGTGTTACAAATTAATATTGCAAAATCATGACATATTCCCATACATCAATATTATAAAATGATTCTCCATGTGCAATGTTGTAGAATGACTTGTAATTTCGAATTGAAAAGAATTGGATAAAGCTACCTATATATTGATTTGAAGGGATTACAAAATTGTAGACCAGTACATTACATGTAATAAAAACTTGCAGCAGTGCTCTTGTGTCCTATTTTGTACGTGCCTTAAGTACTGTGATTTCCTCTCCTTGAGATAGAAGCACTCGCCTTATAATTTTGTTCTTACTCTGCAATTATGCATGTACCTGTTGTTCCTAAAGCTACATAGAAATATTACTTTAGTTATATGATGAATGTCAAATATATGTATTTCTCCATCTATGCCTTTCTGTTATTTGAACATTTTAAATGAGCTTTGTATGCTAACAGAGAAAATTTCTTTCCCTTATTAATTTGTTTTTGGCAAGAAACTACCAAAAGAAAGCTGAATGTTTTTGCATAATGTTACTATGCAGGGGACCATGCAAGTCACCATGCTCAGCCCTGGATTTATCTATGAACCATATGCGCCTCGCGAACCAATCTCTTTCTTGAAAAGGTGGTTTTTTTTAAAAAAATTATCTTCCAACCCACCAAAAATGACATATCATGAAGTTTAAGAAAAAAATATTTGACTTCAATGTGCTTCATTCAAACTGCAATACTGACACTAATCACAGCACTAATATCAGTATTTCAAAAGAAATTACTCGTAAAATTTTAATTAGATTTACTCGTAAAATTCTAATTTTAATTACTCGTAAAATTCTTCGTGAGATTTATGTTCTTTTTTGCTTTGTTTGTTCTTAGTTTCCATTTAGAAGTTCTGTTTTGTTCTTATCCTCTATATTATGCATTAAACTTGCAAAGGATTCTTTGATTTTTTTCCCCTTATGGTGGAAACCTTCTTTATGTTTCGGTTTAGATGGTTCACTAGAAGTGGATGGGGAAGAACAAAGGAAGACATGATCATAGAGGTAAAGTTTTTCAATTTAGCATATTAACTTCCCCAATAGCTCTGTTTTTGTTCTGAAATAATTCAGGCCTTTTTGAGTTATTGTATCAGTAAAATCTATTACCTCCGCTGTTCCAAATTTATTGCACCATGTAGGTTAAAAAGAAGAATCTTGGTAGTGGGTTAAAAGAAGAGAGCGAAAGACAAAAATACAAACTTGCCCATGTGATTGAAACATTAAATAAATCAACAAGAGTTAACATGTAAGGGTATATAAGTATTTGTAGTGTGAAAGCAAATATTTTATTTCCTAAAATGGAAATGGTACAATATTTGTGAAACTTCCTTGAAAGACACATGGTGCAATAATATTGGAACGGAGGGAGTATATGGTTTCTTATCTGATCTATTATAACTTCTTGACATATTCTCACTTTTGTATATGCTTTGACTTTCGTCTGACTTTACAGTTAATACGCTAATGCAGTTTCTCAATATATAAATGAGAGAATTACTTGTATGGTCTATTAGCTTTTAGGTGATATATCCCAAGTGCCTTAGTTTAAAGGACCATGTCATTGATAAGACTGATGATAAAGCATAATGGGTAGGAAACCCGTGCCTTTAAATCTTGTGTAGATATTTTGTGCCAATAACACTGAGAAAGACAGCTCTGATTAAGTCTTCAGAGTATGAGGCCTGTGAGAGATTAAGAAGACCATATTACTCCACAGTAACACATGGCTAGAAGCCCTACACCAAAAATTTATGTCTTCTATTTTCAACTGCTACAATGACAACATTTGCAAAACAGCCATAAATTCACCAAACAACTTTAGATAATTTTACAACCCTTATTTCTAACGAACTTGATACGTGAAACTTGCAGATATTTTAAACAGAACCAGATTTCCAGCAATTTGGCCACAGTCTCTTAGAGCGTATGCCAAAGAACAAGAGCAGTCTTGTAGTTAAAAAAATAAGTGATTTTTGGTCTGAACCCTCTCATAACACATAACTAAGACGTTGGAAGAAAAAATTCAATTTGACCTCAGTCTGCAGCTTATTTATAAATATTATATTTATACCGACCAATGAGGTCTTGGCCTAGTGGCAAGTACGGAGGGCCTGTGTATGATAGGTCATTATCCACCATTCCACCCTCCTCGATTTGTAATTTGTAGTGCCCTTGTGCCTCATTTGGACCAAAAGAATATGAAATTTATACCAGACTGCTGTAGAAACAACTGCCTTCACTCTTTTTGGAATCTCTGATTTGCAAAGGTAAGTGGAGGGATTTTTGTTTGAATGAGGTATGAAATGACTGGCTTAAAGAATTTCCTCTAAACCCATTGATCTGGGAAGTTTCTGTTGACAGACATGAATTGCCAGGCTAGAGGAGTCCCCTCCCAACCCAATGCCATAAAAAAGAACAAGCCTTAGCGAATCTTTAGTATGTAACTGTTATTCTGTGGAGGAGACATAGGGTTATGGCGTTATTCTTACACCTTAAAAAAGTAAGTTTCAGAAAATATGTTCATGAAATAGGGATTAGTAAATTCAGATAAGAGCTACCAAGTACCAAGTCTATTTCCCAGCTACAAGGTAGTTTGTTGTAGGGCTAACGGCTAATAAGTTCTGATAGGTATAGATAAGGAGATTTTTGGTGATAAGAATGAAGTCCATGTCCTACACTCTCATCATATCTCTCTCTTTATCTTTTTTTTTTTTTTTTTTTCTGTTGCAGATATGTTAATGAAATTATATGTCCCATATACTTCTCTCTATTAGTCACTGTTGTCTGTCGTTTATTTGCAGCTCAAAAGCGCCTATGCTATTTCCAAATTGAGGAAATTTGGGTATTCAAAACAGGGGTTCTATAAAGAGGCTTTTGAAATATTTAAAGAGGTATGCCTTATTCTGTATCTGCTTTAG

mRNA sequence

GATCAAACCGGTTTAAGTATTCAGGGAACTTCCTCTCAATTACGAACTCACAAAGGGTCCTCTTTAAACCCTTTCCTTCCCGCAAAACCCTTCTTTCCTCCCCAGCATTGTCCAATCTACATAACTCTATTTTGATCGAAAATGGCGCTTTTACGATCCAATGCTATTCGAAATTTATCAAAATTGTCTCGGATTCAACAACATTCCTTTGCTCTGGGAAGCTCAAGAAGTTACTCTAATGCTGTTATCAGTGGGCCTCAAGGTAACTCCTGCAGCTCAAATTCTTTTTCATACAAGAGTCATAACTATCCACTGATTTGTGGCAGAGCAGGGGTGCTTCGTTCTTCGATGGCTGCTGAGTTGTCAGTGTTTTTATGTGAAGCTAGGTCATTGTCAACAAAAGCAAAAGCCCCTCCTCAAGGACGGGCAATGGGGACCATGCAAGTCACCATGCTCAGCCCTGGATTTATCTATGAACCATATGCGCCTCGCGAACCAATCTCTTTCTTGAAAAGATGGTTCACTAGAAGTGGATGGGGAAGAACAAAGGAAGACATGATCATAGAGCTCAAAAGCGCCTATGCTATTTCCAAATTGAGGAAATTTGGGTATTCAAAACAGGGGTTCTATAAAGAGGCTTTTGAAATATTTAAAGAGGTATGCCTTATTCTGTATCTGCTTTAG

Coding sequence (CDS)

ATGGCGCTTTTACGATCCAATGCTATTCGAAATTTATCAAAATTGTCTCGGATTCAACAACATTCCTTTGCTCTGGGAAGCTCAAGAAGTTACTCTAATGCTGTTATCAGTGGGCCTCAAGGTAACTCCTGCAGCTCAAATTCTTTTTCATACAAGAGTCATAACTATCCACTGATTTGTGGCAGAGCAGGGGTGCTTCGTTCTTCGATGGCTGCTGAGTTGTCAGTGTTTTTATGTGAAGCTAGGTCATTGTCAACAAAAGCAAAAGCCCCTCCTCAAGGACGGGCAATGGGGACCATGCAAGTCACCATGCTCAGCCCTGGATTTATCTATGAACCATATGCGCCTCGCGAACCAATCTCTTTCTTGAAAAGATGGTTCACTAGAAGTGGATGGGGAAGAACAAAGGAAGACATGATCATAGAGCTCAAAAGCGCCTATGCTATTTCCAAATTGAGGAAATTTGGGTATTCAAAACAGGGGTTCTATAAAGAGGCTTTTGAAATATTTAAAGAGGTATGCCTTATTCTGTATCTGCTTTAG

Protein sequence

MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLICGRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPISFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEVCLILYLL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20109.1Spo20109.1mRNA


Homology
BLAST of Spo20109.1 vs. NCBI nr
Match: gi|902225535|gb|KNA20101.1| (hypothetical protein SOVF_055450 [Spinacia oleracea])

HSP 1 Score: 339.7 bits (870), Expect = 3.000e-90
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC 60
           MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC
Sbjct: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC 60

Query: 61  GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI 120
           GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI
Sbjct: 61  GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI 120

Query: 121 SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKE+
Sbjct: 121 SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEI 173

BLAST of Spo20109.1 vs. NCBI nr
Match: gi|731328354|ref|XP_010675001.1| (PREDICTED: 39S ribosomal protein L45, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 255.4 bits (651), Expect = 7.600e-65
Identity = 127/173 (73.41%), Postives = 148/173 (85.55%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC 60
           MA+LRSNAIRN+ +  ++Q HSFALGSSRSYSN VI+GPQ + C + S  Y+SHNYPL  
Sbjct: 1   MAILRSNAIRNVLRFVQLQHHSFALGSSRSYSNGVITGPQVSFCRTYSCKYESHNYPLTH 60

Query: 61  GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI 120
           GRA VLR +M A L VFL EAR ++T+AKAPPQ R MG MQV MLSPGFIYEPYAPREPI
Sbjct: 61  GRATVLRPTMVAGLPVFLHEARLITTQAKAPPQTRQMGAMQVAMLSPGFIYEPYAPREPI 120

Query: 121 SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           SFLKRWFTR+GW RTKEDMI+ELKSAYA+SKLRKFGYSKQGFY+EAF+++KE+
Sbjct: 121 SFLKRWFTRNGWRRTKEDMILELKSAYAVSKLRKFGYSKQGFYREAFKLYKEI 173

BLAST of Spo20109.1 vs. NCBI nr
Match: gi|731416909|ref|XP_010660089.1| (PREDICTED: 39S ribosomal protein L45, mitochondrial [Vitis vinifera])

HSP 1 Score: 184.5 bits (467), Expect = 1.600e-43
Identity = 98/174 (56.32%), Postives = 125/174 (71.84%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHN-YPLI 60
           MA  R  +I NL + + I+  S+ LGSSRSYS   I+ P+ N C + S+ YK HN  P  
Sbjct: 1   MAFGRLRSIHNLYRTAEIRPFSYLLGSSRSYSIVTINVPKIN-CWATSYFYKGHNVLPWT 60

Query: 61  CGRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREP 120
           C     LRSSM  E  + L +AR L+T+AKAP Q R MG ++V+M SPG IYEPYAPREP
Sbjct: 61  CRSTMTLRSSMPTEPWILLNDARLLTTRAKAPAQVRQMGALKVSMQSPGIIYEPYAPREP 120

Query: 121 ISFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           ISF KRWFTR+GW RTKED+++ELKSAYA++KLRK GYS+Q FY EA +++KE+
Sbjct: 121 ISFWKRWFTRNGWRRTKEDIVLELKSAYAVAKLRKIGYSRQKFYTEAVDLYKEI 173

BLAST of Spo20109.1 vs. NCBI nr
Match: gi|388499100|gb|AFK37616.1| (unknown [Lotus japonicus])

HSP 1 Score: 179.1 bits (453), Expect = 6.900e-42
Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHS--FALGSSRSYSNAVISGPQGNSCSSNSFSYKSHN-YP 60
           M L R +A+R L + S+I Q S  + LGS RSYSNA+ +G +GN  S +S  +K H+ +P
Sbjct: 2   MPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKCHDGFP 61

Query: 61  LICGRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPR 120
           L  G+   LRS+MAAELS+F+ + R LST+ K     RA+GT Q+++ SPGFIYEPY PR
Sbjct: 62  LAGGKTLTLRSTMAAELSIFMNDKRMLSTQLKGSSLSRAVGT-QISVSSPGFIYEPYEPR 121

Query: 121 EPISFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           E I F +RWFTRSGW RTK+D+I+ELKSAYAI KLRK GYSK  FY EAF+++KE+
Sbjct: 122 EKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEI 176

BLAST of Spo20109.1 vs. NCBI nr
Match: gi|719999711|ref|XP_010255805.1| (PREDICTED: uncharacterized protein LOC104596382 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 177.9 bits (450), Expect = 1.500e-41
Identity = 98/174 (56.32%), Postives = 126/174 (72.41%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNY-PLI 60
           MAL R  +I++L +   I++ S   GSSRSYSN     P     S  + S K H Y   I
Sbjct: 1   MALRRPTSIQHLYRSLEIRKISSLFGSSRSYSNFNSKVPGLTYRSILNCSRKDHGYLSWI 60

Query: 61  CGRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREP 120
            G A  LRS+M +ELS F+ + R ++T+AKAPPQ R MG +QV+M+SPGF+YEPYAPREP
Sbjct: 61  PGSANPLRSAMGSELSAFVNDMRLVTTQAKAPPQIRQMGALQVSMVSPGFVYEPYAPREP 120

Query: 121 ISFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           I F +RWFTRSGW RTKED+IIELK+AYAI+KLRK GYSK+ FY+EA +++KE+
Sbjct: 121 IPFWRRWFTRSGWKRTKEDIIIELKNAYAIAKLRKAGYSKKQFYQEAVQLYKEI 174

BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKT0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_055450 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.100e-90
Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC 60
           MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC
Sbjct: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC 60

Query: 61  GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI 120
           GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI
Sbjct: 61  GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI 120

Query: 121 SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKE+
Sbjct: 121 SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEI 173

BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g083380 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.300e-65
Identity = 127/173 (73.41%), Postives = 148/173 (85.55%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLIC 60
           MA+LRSNAIRN+ +  ++Q HSFALGSSRSYSN VI+GPQ + C + S  Y+SHNYPL  
Sbjct: 1   MAILRSNAIRNVLRFVQLQHHSFALGSSRSYSNGVITGPQVSFCRTYSCKYESHNYPLTH 60

Query: 61  GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI 120
           GRA VLR +M A L VFL EAR ++T+AKAPPQ R MG MQV MLSPGFIYEPYAPREPI
Sbjct: 61  GRATVLRPTMVAGLPVFLHEARLITTQAKAPPQTRQMGAMQVAMLSPGFIYEPYAPREPI 120

Query: 121 SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           SFLKRWFTR+GW RTKEDMI+ELKSAYA+SKLRKFGYSKQGFY+EAF+++KE+
Sbjct: 121 SFLKRWFTRNGWRRTKEDMILELKSAYAVSKLRKFGYSKQGFYREAFKLYKEI 173

BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: I3SBH4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.800e-42
Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHS--FALGSSRSYSNAVISGPQGNSCSSNSFSYKSHN-YP 60
           M L R +A+R L + S+I Q S  + LGS RSYSNA+ +G +GN  S +S  +K H+ +P
Sbjct: 2   MPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKCHDGFP 61

Query: 61  LICGRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPR 120
           L  G+   LRS+MAAELS+F+ + R LST+ K     RA+GT Q+++ SPGFIYEPY PR
Sbjct: 62  LAGGKTLTLRSTMAAELSIFMNDKRMLSTQLKGSSLSRAVGT-QISVSSPGFIYEPYEPR 121

Query: 121 EPISFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           E I F +RWFTRSGW RTK+D+I+ELKSAYAI KLRK GYSK  FY EAF+++KE+
Sbjct: 122 EKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEI 176

BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: M5WC53_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009363mg PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.700e-39
Identity = 95/174 (54.60%), Postives = 120/174 (68.97%), Query Frame = 1

		  

Query: 1   MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHN-YPLI 60
           MA    + IR L + ++I + S  LGSSRSY++ + + P+   C +     K H   P  
Sbjct: 2   MAFRSLHRIRALHRTAQISESSHLLGSSRSYASGISTVPE-LYCRN-----KGHGALPWT 61

Query: 61  CGRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREP 120
            G +  LRS+MA EL +F  + R LST+ KAP Q R MG ++V MLSPGFIYEPY PRE 
Sbjct: 62  HGSSITLRSAMAVELPIFWNDTRLLSTQVKAPAQARQMGALKVAMLSPGFIYEPYTPREK 121

Query: 121 ISFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           ISFLKRWFTRSGW RTKED ++ELKSAYAI+KLRK GYSK  FYKEA +++KE+
Sbjct: 122 ISFLKRWFTRSGWRRTKEDTVLELKSAYAITKLRKKGYSKNLFYKEAIQLYKEI 169

BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: A0A059D4M5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02002 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.700e-39
Identity = 96/180 (53.33%), Postives = 123/180 (68.33%), Query Frame = 1

		  

Query: 2   ALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHN-YPLIC 61
           ALLR++  R LS+L         LGSSR YS  + + P+ N    +SFS+K  + + L  
Sbjct: 11  ALLRTSHDRGLSQL---------LGSSRCYSRVIPNVPEFNCRGISSFSHKGQSTFVLTR 70

Query: 62  GRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPI 121
             A  L+    AE  +F   AR ++T+ KAPPQ R MG  QVTMLSPG +YEPYAPR PI
Sbjct: 71  ASALTLQEKKNAEFLIFSNWARFMTTQVKAPPQARQMGAFQVTMLSPGIVYEPYAPRVPI 130

Query: 122 SFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEVCLILYLL 181
            F KRWFTRSGW RTKED+I+ELKSAYAI+KLRKFGYSK+ FY+EA +++KEV  + Y++
Sbjct: 131 PFWKRWFTRSGWTRTKEDIILELKSAYAIAKLRKFGYSKKEFYEEAIKLYKEVSSLNYVI 181

BLAST of Spo20109.1 vs. TAIR (Arabidopsis)
Match: AT5G27395.1 (Mitochondrial inner membrane translocase complex, subunit Tim44-related protein)

HSP 1 Score: 141.4 bits (355), Expect = 5.600e-34
Identity = 81/165 (49.09%), Postives = 109/165 (66.06%), Query Frame = 1

		  

Query: 10  RNLSKLSRIQ-QHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLICGRAGVLRS 69
           RN ++ S IQ    F  G  RSY +++   P+ +  S+ S  Y+ H+         +LRS
Sbjct: 28  RNGNEFSLIQIGDDFRFGCWRSYHSSLCHVPEAHGKSAYSRLYEGHSV-----NTHLLRS 87

Query: 70  SMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPISFLKRWFT 129
           +M AE   F+ E RS +T+ KAPPQ +  G ++V+M+SPGF+YEPYA RE IS  +R FT
Sbjct: 88  TMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYALREKISIWRRCFT 147

Query: 130 RSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEV 174
           RSGW RTKED I EL+SAYAI+KLRK GYSK  FY EA E++K++
Sbjct: 148 RSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQI 187

The following BLAST results are available for this feature:
BLAST of Spo20109.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902225535|gb|KNA20101.1|3.0e-9099.4hypothetical protein SOVF_0554... [more]
gi|731328354|ref|XP_010675001.1|7.6e-6573.4PREDICTED: 39S ribosomal prote... [more]
gi|731416909|ref|XP_010660089.1|1.6e-4356.3PREDICTED: 39S ribosomal prote... [more]
gi|388499100|gb|AFK37616.1|6.9e-4256.2unknown [Lotus japonicus][more]
gi|719999711|ref|XP_010255805.1|1.5e-4156.3PREDICTED: uncharacterized pro... [more]
back to top
BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RKT0_SPIOL2.1e-9099.4Uncharacterized protein OS=Spi... [more]
A0A0J8CNG3_BETVU5.3e-6573.4Uncharacterized protein OS=Bet... [more]
I3SBH4_LOTJA4.8e-4256.2Uncharacterized protein OS=Lot... [more]
M5WC53_PRUPE1.7e-3954.6Uncharacterized protein OS=Pru... [more]
A0A059D4M5_EUCGR1.7e-3953.3Uncharacterized protein OS=Euc... [more]
back to top
BLAST of Spo20109.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo20109.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G27395.15.6e-3449.0Mitochondrial inner membrane t... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR28554FAMILY NOT NAMEDcoord: 1..173
score: 2.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0006529 asparagine biosynthetic process
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006177 GMP biosynthetic process
biological_process GO:0006541 glutamine metabolic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0009414 response to water deprivation
biological_process GO:0009651 response to salt stress
biological_process GO:0010157 response to chlorate
biological_process GO:0045037 protein import into chloroplast stroma
biological_process GO:0006457 protein folding
biological_process GO:0009704 de-etiolation
biological_process GO:0001510 RNA methylation
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0009657 plastid organization
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0048366 leaf development
biological_process GO:0006396 RNA processing
biological_process GO:0009451 RNA modification
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0016310 phosphorylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0009058 biosynthetic process
biological_process GO:0015979 photosynthesis
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0045333 cellular respiration
biological_process GO:0031118 rRNA pseudouridine synthesis
biological_process GO:0009250 glucan biosynthetic process
biological_process GO:0015031 protein transport
biological_process GO:0006783 heme biosynthetic process
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0046939 nucleotide phosphorylation
biological_process GO:0006221 pyrimidine nucleotide biosynthetic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0048481 plant ovule development
biological_process GO:0008152 metabolic process
biological_process GO:0010197 polar nucleus fusion
biological_process GO:0006423 cysteinyl-tRNA aminoacylation
biological_process GO:0042407 cristae formation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0043067 regulation of programmed cell death
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006399 tRNA metabolic process
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0006281 DNA repair
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0042793 plastid transcription
biological_process GO:0009073 aromatic amino acid family biosynthetic process
cellular_component GO:0000785 chromatin
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0016020 membrane
cellular_component GO:0009508 plastid chromosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0005730 nucleolus
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005829 cytosol
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
cellular_component GO:0009536 plastid
cellular_component GO:0009295 nucleoid
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0003682 chromatin binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0004817 cysteine-tRNA ligase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0008173 RNA methyltransferase activity
molecular_function GO:0043169 cation binding
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0016462 pyrophosphatase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0003922 GMP synthase (glutamine-hydrolyzing) activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0033862 UMP kinase activity
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression