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Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GATCAAACCGGTTTAAGTATTCAGGGAACTTCCTCTCAATTACGAACTCACAAAGGGTCCTCTTTAAACCCTTTCCTTCCCGCAAAACCCTTCTTTCCTCCCCAGCATTGTCCAATCTACATAACTCTATTTTGATCGAAAATGGCGCTTTTACGATCCAATGCTATTCGAAATTTATCAAAATTGTCTCGGATTCAACAACATTCCTTTGCGTAAGATTTTCATTTTCAATTTTTTCCCTCATTTTTGGGAACTATTTTGATTTATTTGATCCAAGATTCAATTTTTTGTAGTCTGGGAAGCTCAAGAAGTTACTCTAATGCTGTTATCAGTGGTACCAATTCTCAGTTCTATGCTTAATTTTTCTGCCATTTTGTCATAAGTTGTGAAATTTGATTTTGATGCTATTTTGGTTTAATTTTGTTTTTATATTAGTATAGTTGAAGATTTTAGTGCTAAGTTGTTTGTGGGATTAGGTAGGTTAAATTCATAGGGAATGACTGCTAAATGTGGAGGAAACATGGAATTCATTTCAAATGATGTAATTCAAATCCGGGAATTAATGTAATGTTTGGGAAATTTTAGGAATTCAAATTCCAGAATTTCCAATTTACCAAGTTGTTCGGAAAGTTCAGATTTCAACTGAAAGTTTAATGAAAAACAAAAAAGAAAATTTAATGATAAATCAATTACATGGCAAAGTTAGTTTGATCCCAATTGAAAAAATTATTAGCAGAAGGCAGAAGCATCAATTCTTGATAAAAAAAAAGTGGGAAAATAAACCCTAAGTCTATAACTTTCCAAAATAACTCTCAATAACAAAGCCCAAAGACCAGATTCTAATTGTATTTTCTTCAATTCAATATGAAATCGCCATTTTCTTTTGGTCTTCTATCTCTTTTCCTCCATATTTCTCTCTCCTTGAACTCCAATTAATGGCCATACAGAGGAACAAGAATTTCTAATTTAGTGTCGGTGGAAATGGTTGTCTTGATGGTGGCGGAGGTAGTGGTGGTGGTAGTAGAGGAGGAGAAGAAGAGGAAGAGAGTAGGTACAAGAGAGGAGAGAGAAAGTGCCAGAGAATTTTGAGAAGTCCTGTATGTTTTTCAAGTGATAGAGAATAGTTGAAACTTGCTGCTCAATGAGTAATTTCAAATGACACGTTAGAATATGTCATTTATAATTACTTAATTTTGGGCCTTTTGTAAATACCTTTGGAATTGGGCCAATTCCAAAATTTCAAATTCTCTGCTTCCCAAACAGAGGATTTGCCCTATCCAAACATAGCATCAAGGGATTTTAAGTTTTCCGAAGTTGGTAATCGAGTTCAAATATGTTGTTGGATGGGCGGTCAGGCGTAATTTTATGGCAAGTGCGATTGATATTTGAGAATACTTGAAATAAAATGGGTGGTTCTAGTTTGAGCAAACTTGTTCCTGGGTTCTGTATGTATGCTCTTTAGTTATAAAGATTCTGCCTTTGAAAAAATTTATGTAGCATAACAAAATCAATATGCTCCCGTGTGATTTCAACCACCCTGCTCTTCTGTTTTGCAAACACTGAGAGAGTGAGAGTAGATGATAATTTCGAACTCCACTAGAATGTTGATTCTGTCAAGTAGAAATTTATACTTACATGATTCTTTTGGGTGTTATTAGGGCCTCAAGGTAACTCCTGCAGCTCAAATTCTTTTTCATACAAGAGTCATAACTATCCACTGATTTGTGGCAGAGCAGGGGTGCTTCGTTCTTCGATGGTAGAAACCTTGCACTTAGTGTATTATTTTGTCTGTTTTCTGAATTCATAAAAGAATTTTTAATCTGTTTTTGTCTGATTTCCTTACATGATCATGACTTGTTATACGTTTTGTGACTTTTCTCTCATCCTTTGTTTCAGGCTGCTGAGTTGTCAGTGTTTTTATGTGAAGCTAGGTCATTGTCAACAAAAGCAAAAGCCCCTCCTCAAGGACGGGCAATGGTAAAGTTTCTTCCACTCGTAGTAATTTTCTCCCTGGTGGCACTAGTTAACTGTACGTCTGTCTCTGCTACTTTATTGAAGAGCATCACATGGGGTGTTACAAATTAATATTGCAAAATCATGACATATTCCCATACATCAATATTATAAAATGATTCTCCATGTGCAATGTTGTAGAATGACTTGTAATTTCGAATTGAAAAGAATTGGATAAAGCTACCTATATATTGATTTGAAGGGATTACAAAATTGTAGACCAGTACATTACATGTAATAAAAACTTGCAGCAGTGCTCTTGTGTCCTATTTTGTACGTGCCTTAAGTACTGTGATTTCCTCTCCTTGAGATAGAAGCACTCGCCTTATAATTTTGTTCTTACTCTGCAATTATGCATGTACCTGTTGTTCCTAAAGCTACATAGAAATATTACTTTAGTTATATGATGAATGTCAAATATATGTATTTCTCCATCTATGCCTTTCTGTTATTTGAACATTTTAAATGAGCTTTGTATGCTAACAGAGAAAATTTCTTTCCCTTATTAATTTGTTTTTGGCAAGAAACTACCAAAAGAAAGCTGAATGTTTTTGCATAATGTTACTATGCAGGGGACCATGCAAGTCACCATGCTCAGCCCTGGATTTATCTATGAACCATATGCGCCTCGCGAACCAATCTCTTTCTTGAAAAGGTGGTTTTTTTTAAAAAAATTATCTTCCAACCCACCAAAAATGACATATCATGAAGTTTAAGAAAAAAATATTTGACTTCAATGTGCTTCATTCAAACTGCAATACTGACACTAATCACAGCACTAATATCAGTATTTCAAAAGAAATTACTCGTAAAATTTTAATTAGATTTACTCGTAAAATTCTAATTTTAATTACTCGTAAAATTCTTCGTGAGATTTATGTTCTTTTTTGCTTTGTTTGTTCTTAGTTTCCATTTAGAAGTTCTGTTTTGTTCTTATCCTCTATATTATGCATTAAACTTGCAAAGGATTCTTTGATTTTTTTCCCCTTATGGTGGAAACCTTCTTTATGTTTCGGTTTAGATGGTTCACTAGAAGTGGATGGGGAAGAACAAAGGAAGACATGATCATAGAGGTAAAGTTTTTCAATTTAGCATATTAACTTCCCCAATAGCTCTGTTTTTGTTCTGAAATAATTCAGGCCTTTTTGAGTTATTGTATCAGTAAAATCTATTACCTCCGCTGTTCCAAATTTATTGCACCATGTAGGTTAAAAAGAAGAATCTTGGTAGTGGGTTAAAAGAAGAGAGCGAAAGACAAAAATACAAACTTGCCCATGTGATTGAAACATTAAATAAATCAACAAGAGTTAACATGTAAGGGTATATAAGTATTTGTAGTGTGAAAGCAAATATTTTATTTCCTAAAATGGAAATGGTACAATATTTGTGAAACTTCCTTGAAAGACACATGGTGCAATAATATTGGAACGGAGGGAGTATATGGTTTCTTATCTGATCTATTATAACTTCTTGACATATTCTCACTTTTGTATATGCTTTGACTTTCGTCTGACTTTACAGTTAATACGCTAATGCAGTTTCTCAATATATAAATGAGAGAATTACTTGTATGGTCTATTAGCTTTTAGGTGATATATCCCAAGTGCCTTAGTTTAAAGGACCATGTCATTGATAAGACTGATGATAAAGCATAATGGGTAGGAAACCCGTGCCTTTAAATCTTGTGTAGATATTTTGTGCCAATAACACTGAGAAAGACAGCTCTGATTAAGTCTTCAGAGTATGAGGCCTGTGAGAGATTAAGAAGACCATATTACTCCACAGTAACACATGGCTAGAAGCCCTACACCAAAAATTTATGTCTTCTATTTTCAACTGCTACAATGACAACATTTGCAAAACAGCCATAAATTCACCAAACAACTTTAGATAATTTTACAACCCTTATTTCTAACGAACTTGATACGTGAAACTTGCAGATATTTTAAACAGAACCAGATTTCCAGCAATTTGGCCACAGTCTCTTAGAGCGTATGCCAAAGAACAAGAGCAGTCTTGTAGTTAAAAAAATAAGTGATTTTTGGTCTGAACCCTCTCATAACACATAACTAAGACGTTGGAAGAAAAAATTCAATTTGACCTCAGTCTGCAGCTTATTTATAAATATTATATTTATACCGACCAATGAGGTCTTGGCCTAGTGGCAAGTACGGAGGGCCTGTGTATGATAGGTCATTATCCACCATTCCACCCTCCTCGATTTGTAATTTGTAGTGCCCTTGTGCCTCATTTGGACCAAAAGAATATGAAATTTATACCAGACTGCTGTAGAAACAACTGCCTTCACTCTTTTTGGAATCTCTGATTTGCAAAGGTAAGTGGAGGGATTTTTGTTTGAATGAGGTATGAAATGACTGGCTTAAAGAATTTCCTCTAAACCCATTGATCTGGGAAGTTTCTGTTGACAGACATGAATTGCCAGGCTAGAGGAGTCCCCTCCCAACCCAATGCCATAAAAAAGAACAAGCCTTAGCGAATCTTTAGTATGTAACTGTTATTCTGTGGAGGAGACATAGGGTTATGGCGTTATTCTTACACCTTAAAAAAGTAAGTTTCAGAAAATATGTTCATGAAATAGGGATTAGTAAATTCAGATAAGAGCTACCAAGTACCAAGTCTATTTCCCAGCTACAAGGTAGTTTGTTGTAGGGCTAACGGCTAATAAGTTCTGATAGGTATAGATAAGGAGATTTTTGGTGATAAGAATGAAGTCCATGTCCTACACTCTCATCATATCTCTCTCTTTATCTTTTTTTTTTTTTTTTTTTCTGTTGCAGATATGTTAATGAAATTATATGTCCCATATACTTCTCTCTATTAGTCACTGTTGTCTGTCGTTTATTTGCAGCTCAAAAGCGCCTATGCTATTTCCAAATTGAGGAAATTTGGGTATTCAAAACAGGGGTTCTATAAAGAGGCTTTTGAAATATTTAAAGAGGTATGCCTTATTCTGTATCTGCTTTAGGATCAAACCGGTTTAAGTATTCAGGGAACTTCCTCTCAATTACGAACTCACAAAGGGTCCTCTTTAAACCCTTTCCTTCCCGCAAAACCCTTCTTTCCTCCCCAGCATTGTCCAATCTACATAACTCTATTTTGATCGAAAATGGCGCTTTTACGATCCAATGCTATTCGAAATTTATCAAAATTGTCTCGGATTCAACAACATTCCTTTGCTCTGGGAAGCTCAAGAAGTTACTCTAATGCTGTTATCAGTGGGCCTCAAGGTAACTCCTGCAGCTCAAATTCTTTTTCATACAAGAGTCATAACTATCCACTGATTTGTGGCAGAGCAGGGGTGCTTCGTTCTTCGATGGCTGCTGAGTTGTCAGTGTTTTTATGTGAAGCTAGGTCATTGTCAACAAAAGCAAAAGCCCCTCCTCAAGGACGGGCAATGGGGACCATGCAAGTCACCATGCTCAGCCCTGGATTTATCTATGAACCATATGCGCCTCGCGAACCAATCTCTTTCTTGAAAAGATGGTTCACTAGAAGTGGATGGGGAAGAACAAAGGAAGACATGATCATAGAGCTCAAAAGCGCCTATGCTATTTCCAAATTGAGGAAATTTGGGTATTCAAAACAGGGGTTCTATAAAGAGGCTTTTGAAATATTTAAAGAGGTATGCCTTATTCTGTATCTGCTTTAG ATGGCGCTTTTACGATCCAATGCTATTCGAAATTTATCAAAATTGTCTCGGATTCAACAACATTCCTTTGCTCTGGGAAGCTCAAGAAGTTACTCTAATGCTGTTATCAGTGGGCCTCAAGGTAACTCCTGCAGCTCAAATTCTTTTTCATACAAGAGTCATAACTATCCACTGATTTGTGGCAGAGCAGGGGTGCTTCGTTCTTCGATGGCTGCTGAGTTGTCAGTGTTTTTATGTGAAGCTAGGTCATTGTCAACAAAAGCAAAAGCCCCTCCTCAAGGACGGGCAATGGGGACCATGCAAGTCACCATGCTCAGCCCTGGATTTATCTATGAACCATATGCGCCTCGCGAACCAATCTCTTTCTTGAAAAGATGGTTCACTAGAAGTGGATGGGGAAGAACAAAGGAAGACATGATCATAGAGCTCAAAAGCGCCTATGCTATTTCCAAATTGAGGAAATTTGGGTATTCAAAACAGGGGTTCTATAAAGAGGCTTTTGAAATATTTAAAGAGGTATGCCTTATTCTGTATCTGCTTTAG MALLRSNAIRNLSKLSRIQQHSFALGSSRSYSNAVISGPQGNSCSSNSFSYKSHNYPLICGRAGVLRSSMAAELSVFLCEARSLSTKAKAPPQGRAMGTMQVTMLSPGFIYEPYAPREPISFLKRWFTRSGWGRTKEDMIIELKSAYAISKLRKFGYSKQGFYKEAFEIFKEVCLILYLL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20109.1 vs. NCBI nr
Match: gi|902225535|gb|KNA20101.1| (hypothetical protein SOVF_055450 [Spinacia oleracea]) HSP 1 Score: 339.7 bits (870), Expect = 3.000e-90 Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 1
BLAST of Spo20109.1 vs. NCBI nr
Match: gi|731328354|ref|XP_010675001.1| (PREDICTED: 39S ribosomal protein L45, mitochondrial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 255.4 bits (651), Expect = 7.600e-65 Identity = 127/173 (73.41%), Postives = 148/173 (85.55%), Query Frame = 1
BLAST of Spo20109.1 vs. NCBI nr
Match: gi|731416909|ref|XP_010660089.1| (PREDICTED: 39S ribosomal protein L45, mitochondrial [Vitis vinifera]) HSP 1 Score: 184.5 bits (467), Expect = 1.600e-43 Identity = 98/174 (56.32%), Postives = 125/174 (71.84%), Query Frame = 1
BLAST of Spo20109.1 vs. NCBI nr
Match: gi|388499100|gb|AFK37616.1| (unknown [Lotus japonicus]) HSP 1 Score: 179.1 bits (453), Expect = 6.900e-42 Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = 1
BLAST of Spo20109.1 vs. NCBI nr
Match: gi|719999711|ref|XP_010255805.1| (PREDICTED: uncharacterized protein LOC104596382 isoform X2 [Nelumbo nucifera]) HSP 1 Score: 177.9 bits (450), Expect = 1.500e-41 Identity = 98/174 (56.32%), Postives = 126/174 (72.41%), Query Frame = 1
BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKT0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_055450 PE=4 SV=1) HSP 1 Score: 339.7 bits (870), Expect = 2.100e-90 Identity = 172/173 (99.42%), Postives = 173/173 (100.00%), Query Frame = 1
BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNG3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g083380 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 5.300e-65 Identity = 127/173 (73.41%), Postives = 148/173 (85.55%), Query Frame = 1
BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: I3SBH4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 179.1 bits (453), Expect = 4.800e-42 Identity = 99/176 (56.25%), Postives = 129/176 (73.30%), Query Frame = 1
BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: M5WC53_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009363mg PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.700e-39 Identity = 95/174 (54.60%), Postives = 120/174 (68.97%), Query Frame = 1
BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Match: A0A059D4M5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02002 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.700e-39 Identity = 96/180 (53.33%), Postives = 123/180 (68.33%), Query Frame = 1
BLAST of Spo20109.1 vs. TAIR (Arabidopsis)
Match: AT5G27395.1 (Mitochondrial inner membrane translocase complex, subunit Tim44-related protein) HSP 1 Score: 141.4 bits (355), Expect = 5.600e-34 Identity = 81/165 (49.09%), Postives = 109/165 (66.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20109.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20109.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20109.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo20109.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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