Spo20186 (gene) | SpinachBase

Overview


Name	Spo20186
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr2 : 23812780 .. 23815420 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATTGGCCTCCCAAAAGCTATGATTGCTTCTTCTGTCATGACAGGAGCTCTTGGTGGTTCTCAGACTGGTCAGGTAAATCAAAACAGTTTGCAAAATCGGTCAATTATTGGTAATGACCCTTTAACGCATCATCTAGCCAACATGTCTAGGAGTCAACTGAATCAAGTTATACATGAAATGAAGGTAAATACTGCAAAAGAGATGTTCACAGGAATTATTTTACATGTGAATGTATTTCCTGTCAATCTGGTTCCATATGCTTTCTATGCAAAACAAGGACCTTATGTCAACTTTTTCTTGTGAGCCCACAGCTTTTAAAAGCTCTCTTCCGGGTTCTCTTCAACTCCGAGCTGCTTCCATTTATTTGTAAAATTACTTAAGTTTGTCCTTAATTTCTCTTTGGGTGTAGCAACAAATTTAACCTCCAGGCTTCAGTTTATGGTAGTGACCTTACGTGAATAGAAGCAAGGAAATTGGAGGGGGGGATGATATCCTCTGTATATATAGAAGCAGAAATATCATTGTTGATCAAGCTTTTGATGGTTAATTTACTATGATTATGATATAGTTTGGTCGCAAAAGCAGAAATATCATTGTTGATCAAGGTTGAATATGTCTATGATTGGGAATTTGTGATCGTCTTGACTCTCAGCTCTACCAGTGTTACCCATAGAGCGGTGTTGTGGGGACCTATTATGCAAGTTGGCATGTTCTGTGGTTCATGCAGTAGATAATGTGATATGCTTTTGGTTTTTGGTATACGGTATTTTACAGTTCATACCATTATAAGTTCTTATGTTAATATTAATTTTTTATATTTTATATATTTTTTATATGATATATGATATATGTTAATAGTAGTACCTAGGAATCATCTGGAAAAATTGATTTACTTTTTTATTTTATTTTTGTGATCAATCTGATCATGTGTTAATCTCACGTACTTAAAATCTTCTTATTGTGTTTGTATTCTATATGAAGTTGGTGTTTTCGAAAGACTAAAAGTTCGTATTTTCTTTTGTGAGGTGTGATTTAAGGATGCAACGACATCTTTCCGACTCTTACTGCATACCGTGCTCCAGTTTTTCAAATACGCTTGTCTGCGTAATCATCTTCTTGTCGTCTTAGCTATCATGAATCTGCAGCTTCAGTAGACCTTCATACTTTAGTGTAATCACTTATGACCAAGCTCTGATGGTGCAGACCCAAGTGATGCAGACAAAGTGGTGCAGACCCAAGTGATGCAGACCCACGTGATGCAAATCCAAAGTGGTGCAGACCCAAGTGATGCAGATCCAAAGTGGTGCAGACCCAAGTGATGCAAACCTTCGTGAAAATTCATGTGGTGTAGACCCAAGTGATGCAAATAAAGTGGTGAGGACACAAGGTGGTGCAGATCCAAAGTGATTTGTTAGTCTTCCTTTATTATGGACCTGAGTGAGATATTCATCTAGTTTTTCATGCAAGCATGGCATCTTTTGTTTTCTCCTTTGTCATCCTCTTTAGAATTAAATATTTTTATTGATTAAATATGACGATTTTGAATTATTGAAAGTAATGTTAGTTTATTTTCTTAAATTTTAGGTGGTAAACTGAGTTTTAGGGAGCTAATTGATGATGATGATGATATTTTTGGGTCGGAAAAGGTACATCTACTTGTTTGTGATACTAAACTATATTGATTTTTGGAGAATTTTTTAATAGAATCCAATTGGTGTTAGGGTGACTGAATTTACATGTATTGCAACAATTATGTTCCCTAATTTTGTTTTAATAGGATATGATTAGGTTTTGATTGAATATGCTGTGTTGTGGATGTTGGTGTCTATTGCTACTCTTTTGTATTGGTAATTATGTTGTTGTTTTATTGCTCTAGTTTCTGTTTTGTTCTACTAAAATTTGTTAGTTAGTGATGAAGTTCATTTTGGCGGTGGGTTAATCAATTCCTTTTTCCGCTACAAATTTTCTACTTGATTAATTAATGTCTGCATGTGAATGAAGTTAAAGTGGTTCACTTTTTTTTATTTTTGGAGCTTCTGGTAATTAATTAATTGAGGCAGTGTGCATCTGCCAAAGTATTTTTTGCGTTGTTGCAAATTATTTGACGTGGCCTCTACAGGCTCTGATGGTGTAGACCCAAGTGATGCAAACAAAGTGGTTCAGACCCACCAAGTGATGCAGATCCAAAGCGGTGCATACCCAAGTGATGTTGATCCAAATTGGTTAAACCGAATACATAAGCTGGATTATGAATCCCCATAATCTATTATCCGGTTATGACTCGCTCATATGATTGACCGTGCCCCAACAGGATAATCTATTATACCTTGAGAGATCTATTTGAGTTAAAGACAATAATAAGTGAATAACAATTCAAAGAATGGTGAGGTTAAGGTATGTTTTTCTTCTTATTGAGGATCGTAGTTTCTAGGATTCTTTACTCAAAAATATAATTAGGGATTTATGAATTTACTTAAATTTGACAGGAAGCAGATGAAGCTGATGATAATACCTATTATCTAAATTTCTGTAAGGTTTGGAGTTTGTCTGATTTGCTTAATTGGTATAGAATTCATAGGTTTATTGTTTTGTTTTGTAGGTTTCTATGTGTTTTCTCAACTGGGATGTTGATTAG

mRNA sequence

ATGCCAATTGGCCTCCCAAAAGCTATGATTGCTTCTTCTGTCATGACAGGAGCTCTTGGTGGTTCTCAGACTGGTCAGACCCAAGTGATGCAGATCCAAAGTGGTGCAGACCCAAGTGATGCAAACCTTCGTGAAAATTCATGTGGTGTAGACCCAAGTGATGCAAATAAAGTGGTGAGGACACAAGGTGGTAAACTGAGTTTTAGGGAGCTAATTGATGATGATGATGATATTTTTGGGTCGGAAAAGGAAGCAGATGAAGCTGATGATAATACCTATTATCTAAATTTCTGTAAGGTTTCTATGTGTTTTCTCAACTGGGATGTTGATTAG

Coding sequence (CDS)

ATGCCAATTGGCCTCCCAAAAGCTATGATTGCTTCTTCTGTCATGACAGGAGCTCTTGGTGGTTCTCAGACTGGTCAGACCCAAGTGATGCAGATCCAAAGTGGTGCAGACCCAAGTGATGCAAACCTTCGTGAAAATTCATGTGGTGTAGACCCAAGTGATGCAAATAAAGTGGTGAGGACACAAGGTGGTAAACTGAGTTTTAGGGAGCTAATTGATGATGATGATGATATTTTTGGGTCGGAAAAGGAAGCAGATGAAGCTGATGATAATACCTATTATCTAAATTTCTGTAAGGTTTCTATGTGTTTTCTCAACTGGGATGTTGATTAG

Protein sequence

MPIGLPKAMIASSVMTGALGGSQTGQTQVMQIQSGADPSDANLRENSCGVDPSDANKVVRTQGGKLSFRELIDDDDDIFGSEKEADEADDNTYYLNFCKVSMCFLNWDVD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20186.1	Spo20186.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo20186.1 vs. NCBI nr
BLAST of Spo20186.1 vs. UniProtKB/TrEMBL
BLAST of Spo20186.1 vs. ExPASy Swiss-Prot
BLAST of Spo20186.1 vs. TAIR (Arabidopsis)

BLAST of Spo20186.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20186.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20186.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20186.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006996	organelle organization
biological_process	GO:0043933	protein-containing complex subunit organization

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03878	0.68	Barchart \| Table
Spo21394	0.68	Barchart \| Table
Spo16679	0.67	Barchart \| Table
Spo25808	0.67	Barchart \| Table
Spo21629	0.66	Barchart \| Table
Spo21859	0.65	Barchart \| Table