Spo20231 (gene) | SpinachBase

Overview


Name	Spo20231
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Kinase superfamily protein, putative
Location	SpoScf_00073 : 705447 .. 710097 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCCAACTTCAAGGATCTGCTGGATAAAATGTTTGTCCTAGATCCAGATAAAAGACTAACTGTCTCACAAGCTTTGAATCACCCATTTATTACGGGCAAGTGAATTCAGTTGCTGATTTTCTGAGTCCAGAAATGTTGTAACACTAGATTTTTGTACATTCCAGTCTTAGTTTATATCAGACTCTAATCATTGGGAATTTATCTATCTATCTATCTATCTATCTTCTGCACTACTGTGGGCCTGATATTGAGGGAGATTGCTTCCGGCGTCATTCAAGTTGGACTCAGAAGGCTGATATCTGTTGGGAGTTCACTTACTGGCAATTCTCAATTGATTGTGTTCTGTTTCTATTGAAATTTCCAGTTCTTTGGGGCAACCTCCAGTCTCTAGAGGCCTCCAAGGCACCCTGCAGAAGCTTTGGCTCTGGAGTTGGGGATGTCTGGTGCTGCTTCTCATGAAAGTTATATCAGAGAATTTCCCAAGCTACTGCAGCTCTATGTAAGTTTCCTCTTTATATGCAACCTCTGTCTATCTTCTTCTTTTATGATTTCTTGTTAGCTTGTATGCCGAAAGTCTCTTGGTTATATGTTAAAACTTCCGTGCTCTTATCCTTTGCCGATCTATCACATGTTAGTATGTTACGTATGCATATGAGATCACACAATGATAGTATTATTATTTTATTTTATTTTAAAATTGGAGCTTGAACGAACTTTAACCGAGCTTATTAACAAACATAAATGACTTTATGGACGAAAAATACAAGTTGATTGATATACGATTTGAATACATATTTTTTGGAGTTCGATTTGTCTATTAATCAAGTTTATACTTTTGTTAAGCCCGTGTGTTTACTTAGAAACAAAGTTAGATTTATCTATTAATCAAGTTTGTACTTTTATTTTTAAGCTCGTTTTGTTTACTTAGAAACGAGCTTCGACCCAAAATTGACTAAGTTTGTTCATCACAAGTTAGTAGTGAATAAAACTAGCATCCCACAATACTATGCAATAGTACGTAGTATGATCTTAATAAGAGTTATAGTGTTCCTTTTATCTTTGCCCTACATATCTGAACTGATTGAAATTCTCAGTTACAGAAAGAAAGAGGAGGTAGGGAAAATAGATGTCTTAGTTTGGAGTGGACGCCATGGTTGATACTCTTCACAAGCAGGCGCATGATCCCTTGTTCTCAATGACATTGAGATTCTTGATAAGGTTTTTCTTCTTTCTAGCTAAAGCCCTGGTTTATTTACATTGACTATATATGAGTGATTGTCGCTTATGTTCTTGATTATTTTCTATAAGGAGTTCTGTCTTCGTCAAGGAGTACCCTCACCCATCCTGGACCTGACTGAAAAGGTTGCTTCTTGAGGACAAAGATGCTCCAGCAACACCCCAATTTGTGAGGTGAGATTCTCAGATTTTCCAATTGTATGGTCATGTTTTAAAAGATTGGACTGTCCTGCTCTTGCTTAATTTCTACTTGGTGTTAAAATTCTATTCCTGAGGTCAAGAATAGACCGCATGCTTATTGTGTGGGTTAATGTTAGAGAGCTGGAGAGTGGACATTGGAATTATGTGACTGATATAAATCTATTTTCTAAGCAGTCACAAGAATTCATGTATTCAATTGGGTTGCTCCGTTTGATGATATTGTCTCATGGTCATGTAATGCAAGTATCATAAGTTGGTTGTTTTCCATTGTATGAATTATGCATAGAAGATTCTGTTTTTTTTAATCTAAGTATAACTAATCAAAAAGCATAAAAATGTAAAGACATTCTTCATTCTTCAAGTTAAAATTTAGCTGGCTGAAGATCACAAATGTTCAAAGGGACAAATCTATCTTGGCTCAGCTTATGTGTTATGCATTTCATGTTTAAGTATCAGATGAATGATAGAAAAGGAATGATTGGCAACTATAATATTTACTTCTATCCCCAATAAGGATTAAGGACTATCACAATTTTGTTCAAGCAAAGAACTACTCTTTACAAAAAAACAAGACTACAATGATTAATTCGACAGAGATCAATTCTAAGTGAAAACAATTATTAAATTTGCAATTGATGCTCCAAACAAAACAAATCATGAGGGAAATTCGTATATAAAAAGTTTACAAAAGAGATTCATATGGAGAAAACATACCAGGGAAATTCAAGAAGAAAATTATCAGGAGTGAAAAGAGTGATATAGGAATTTAGGGTCAGAGATGAATAGTGGGTGGGAGATATGAAGAGTGTGGCGACTTGGAGGTTACAGGCAGTAGTGGGCATTTAGGGGTTTTGAATTTTTATAATCCTTTCTTATTTACACAATAGGGAAGTAATCCGACACTTCATCAAAGCGCCCCAATTTGTTTAGTCCCTTCTCTTCTCCAACATTATTTTAACGAGTGTCTCTACATAAGTGCTCCTAAAGACTATTTTCTAGTAGTGTATGTACTCCTGCATATGTTATCCTTGAGCACTAGCATTGAACTGAAAACCTGCTTTGTTCTGATATTCACACAGGCAATAGAGAGGAGCTAGAGCTGCACTGAATGATACCACAGAAGCTCAGCCCCTCAAGAAGAGACCACTGAACACACACTGGCAGCACCAACTGTTGTGCTTGAGCAAGAAGAATTTCAGGGAATATATTCCGGAGTGCAAGCTGAAGTGCTGCTCCTACTGATGTCCAGCTGGCTCATTCAAGAACACCACAGGCTGATTTTCTTTGCTTGATTACTAAACATGTACGAAGAAAGGGAATGGTGTGGTTGCACTTTTTTCCCCTTTCCATTTTGTAAACGCATAAGAGTAACTTGTAAAACGTACGTTATATTTTAATATATTTAATGCTTGTTTATGAAAAAAAAATAATTTTTTTTCAAAAAGAGGGTGGAATAGAGGACGGTTATCTAAGAAAATCGTCCTCTATATTTATGTAAAAAAGGAAGAATAGAGTACGCCTATCTAAGCAAGCTGTCCTCTATTGTAATAAATAGATGACATTTAAGTGTCTCAACCGTTCTTATTTCTTCTATATTTTCAGATTTAAAGAAGGGAATAGAGAACGGTTAGATTAGATCACCGTCCTCTATTCATATGTATATAGAACGTATATCCCAACCGTCCTCTAAACTATAGAGATCGCTTAGCAGGAGAACGGTCCTCAGGCGTCCTCTAAAGCCTATTTCAACAGTTCTCTATTCTCTTTTTTGTAGTAGTGAAGGCACACTTCAACATGTGACTACCTTGACCATGGCAATGTCGCACAATACGACATTTACAAGAAAAGTAGCAAAATCACTACTCGAACGTACCTCGCACTAAACGAGTCTGGTTCAAACTATTCATGATCCATGTCGCCATGCAAAGCATTATAGCACCAAGCCAATCCCGTAGCTACAATTGGGGGTTTGAGAAAAACACTCTAAAAATGCTCGAAATGACGATTTTATCGCAAATTCTCGACGCTAATGCTATACATACATCATAGGGGCACAATCCTAAGCTTTAATCGTGTAAAACGAACCTTAGAATGGCTACAACCCCTCCCAAATTCTAAAGCACTACTTAGAATATATAAAGTCACCCCACTAACAAGGGTAACTGAAAATCGCGAGTCACCAAAACTCCGATCAAACTACTGCACCTAACGCTCGCCCTATAAGCGCCCGTTACACAGTCTACGTCGTTCCAAAGCAAAAGCAAAAGAAAAAGAAAAATCAAGGATAAGAACTGTAAAAATATACCCAGAGATAATTTTCAACGCCCAGAGCTGGGCGCCAATATCTTTAACGCCCTAACCTGGGCGCTGAATATCTCTGCTTGCTAAATCTTGCCCTGATATAAAAACAAGAAAGAAACATCTATGAATCCTCGCATCGAACGAAGTAATAAGCTGTGCACGCCCACGCAGAAGGTGCTACACTTGTTCGAGCACCTGAACGATTCAGCGCGATGAAATACTCCAATGCAAAAAATATATATAATAATGATATCCCTGAAGGAAATAATGCCCTTGGTCCAAGTATGCATTCTATGTTAAGTCTAATAAATGCGGTTCAGTATTAATTAACAAGTTAATAATTCAGTGAGATCAAGTGAGCTGAATGCCTNAGAAACAAAGTTAGATTTATCTATTAATCAAGTTTGTACTTTTATTTTTAAGCTCGTTTTGTTTACTTAGAAACGAGCTTCGACCCAAAATTGACTAAGTTTGTTCATCACAAGTTAGTAGTGAGTATAACTAGCATCCCACAATACAATGCAATAGTACGTAGTATGATCTTAACAAGAGTTATAGTGTTCCTTTTATCTTTACCCTATATATCTAAACTGATGAACTGAAAACATACAAGTTTAGTGTATGTACTCCTGCATATGTTATCCTTGAGCACTAACATTGAACTGAAAACCTGCTTTGTCCTGATATTCACACAGGCAATAGAGAGGAGCTAGAGCTGCACTGAATGATACCACAGAAGCTCAGCCCCTCAAGAAGAGACCACTGAACACACACTGGCAGCACCAACTATTGTGCTTGAGCAAGAAGAATTTCAGGGAATATATTCCGGAGTGCAAGCTGAAGTGCTGCTCCTACTGATGTGCAGCTGGCTCATTCAAGAACACCACATGCTGATTTTCTTTGCTTGA

mRNA sequence

ATGTTAGCCAACTTCAAGGATCTGCTGGATAAAATGTTTGTCCTAGATCCAGATAAAAGACTAACTGTCTCACAAGCTTTGAATCACCCATTTATTACGGGCAATTCTTTGGGGCAACCTCCAGTCTCTAGAGGCCTCCAAGGCACCCTGCAGAAGCTTTGGCTCTGGAGTTGGGGATGTCTGGTGCTGCTTCTCATGAAAGTTATATCAGAGAATTTCCCAAGCTACTGCAGCTCTATAAGCTCAGCCCCTCAAGAAGAGACCACTGAACACACACTGGCAGCACCAACTATTGTGCTTGAGCAAGAAGAATTTCAGGGAATATATTCCGGAGTGCAAGCTGAAGTGCTGCTCCTACTGATGTGCAGCTGGCTCATTCAAGAACACCACATGCTGATTTTCTTTGCTTGA

Coding sequence (CDS)

ATGTTAGCCAACTTCAAGGATCTGCTGGATAAAATGTTTGTCCTAGATCCAGATAAAAGACTAACTGTCTCACAAGCTTTGAATCACCCATTTATTACGGGCAATTCTTTGGGGCAACCTCCAGTCTCTAGAGGCCTCCAAGGCACCCTGCAGAAGCTTTGGCTCTGGAGTTGGGGATGTCTGGTGCTGCTTCTCATGAAAGTTATATCAGAGAATTTCCCAAGCTACTGCAGCTCTATAAGCTCAGCCCCTCAAGAAGAGACCACTGAACACACACTGGCAGCACCAACTATTGTGCTTGAGCAAGAAGAATTTCAGGGAATATATTCCGGAGTGCAAGCTGAAGTGCTGCTCCTACTGATGTGCAGCTGGCTCATTCAAGAACACCACATGCTGATTTTCTTTGCTTGA

Protein sequence

MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGNSLGQPPVSRGLQGTLQKLWLWSWGCLVLLLMKVISENFPSYCSSISSAPQEETTEHTLAAPTIVLEQEEFQGIYSGVQAEVLLLLMCSWLIQEHHMLIFFA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20231.1	Spo20231.1	mRNA

Homology

[Close]

BLAST of Spo20231.1 vs. NCBI nr
Match: gi|902237728|gb|KNA24912.1| (hypothetical protein SOVF_011200 [Spinacia oleracea])

HSP 1 Score: 74.7 bits (182), Expect = 1.400e-10
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1


		  
Query: 1    MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGN 36
            MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGN
Sbjct: 1042 MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGN 1076

[Close]

BLAST of Spo20231.1 vs. NCBI nr
Match: gi|828305847|ref|XP_012570219.1| (PREDICTED: serine/threonine-protein kinase prpf4B [Cicer arietinum])

HSP 1 Score: 70.5 bits (171), Expect = 2.600e-9
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1


		  
Query: 1    MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
            MLANFKDLLDK+F+LDPDKRLTVSQALNHPFITG
Sbjct: 988  MLANFKDLLDKIFILDPDKRLTVSQALNHPFITG 1021

[Close]

BLAST of Spo20231.1 vs. NCBI nr
Match: gi|694311179|ref|XP_009356555.1| (PREDICTED: serine/threonine-protein kinase prpf4B-like isoform X3 [Pyrus x bretschneideri])

HSP 1 Score: 70.5 bits (171), Expect = 2.600e-9
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1


		  
Query: 1    MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
            MLA+FKDLLDKMFVLDPDKRLTVSQALNHPFITG
Sbjct: 1000 MLADFKDLLDKMFVLDPDKRLTVSQALNHPFITG 1033

[Close]

BLAST of Spo20231.1 vs. NCBI nr
Match: gi|658008985|ref|XP_008339690.1| (PREDICTED: serine/threonine-protein kinase prpf4B-like [Malus domestica])

HSP 1 Score: 70.5 bits (171), Expect = 2.600e-9
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1


		  
Query: 1    MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
            MLA+FKDLLDKMFVLDPDKRLTVSQALNHPFITG
Sbjct: 976  MLADFKDLLDKMFVLDPDKRLTVSQALNHPFITG 1009

[Close]

BLAST of Spo20231.1 vs. NCBI nr
Match: gi|922408211|ref|XP_013470206.1| (Serine/Threonine kinase domain protein [Medicago truncatula])

HSP 1 Score: 70.1 bits (170), Expect = 3.400e-9
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
           MLANFKD+LDK+FVLDPDKRLTVSQALNHPFITG
Sbjct: 960 MLANFKDILDKIFVLDPDKRLTVSQALNHPFITG 993

[Close]

BLAST of Spo20231.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1B0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_011200 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.600e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1


		  
Query: 1    MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGN 36
            MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGN
Sbjct: 1042 MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGN 1076

[Close]

BLAST of Spo20231.1 vs. UniProtKB/TrEMBL
Match: A0A0E0P0B0_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.800e-9
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGNSLGQPPVSRGLQG 49
           M+++FKDLL+K+FVLDP KR+TVS+AL+HPFITGN    PP S  ++G
Sbjct: 876 MISSFKDLLEKIFVLDPKKRITVSEALSHPFITGNEAAMPPKSDSVEG 923

[Close]

BLAST of Spo20231.1 vs. UniProtKB/TrEMBL
Match: A0A0E0P0B1_ORYRU (Uncharacterized protein OS=Oryza rufipogon PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.800e-9
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGNSLGQPPVSRGLQG 49
           M+++FKDLL+K+FVLDP KR+TVS+AL+HPFITGN    PP S  ++G
Sbjct: 889 MISSFKDLLEKIFVLDPKKRITVSEALSHPFITGNEAAMPPKSDSVEG 936

[Close]

BLAST of Spo20231.1 vs. UniProtKB/TrEMBL
Match: A0A072VS25_MEDTR (Serine/Threonine kinase domain protein OS=Medicago truncatula GN=MTR_1g111180 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-9
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
           MLANFKD+LDK+FVLDPDKRLTVSQALNHPFITG
Sbjct: 959 MLANFKDILDKIFVLDPDKRLTVSQALNHPFITG 992

[Close]

BLAST of Spo20231.1 vs. UniProtKB/TrEMBL
Match: A0A0E0D5H9_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-9
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITGNSLGQPPVSRGLQG 49
           M+++FKDLL+K+FVLDP KR+TVS+AL HPFITGN    PP S  ++G
Sbjct: 850 MISSFKDLLEKIFVLDPKKRITVSEALGHPFITGNEAAMPPKSDSVEG 897

[Close]

BLAST of Spo20231.1 vs. TAIR (Arabidopsis)
Match: AT3G25840.1 (Protein kinase superfamily protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.300e-10
Identity = 27/34 (79.41%), Postives = 33/34 (97.06%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
           +LA+F+DLLDKMF+LDP++RLTVSQAL HPFITG
Sbjct: 901 ILAHFRDLLDKMFILDPERRLTVSQALAHPFITG 934

[Close]

BLAST of Spo20231.1 vs. TAIR (Arabidopsis)
Match: AT1G13350.2 (Protein kinase superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 8.100e-9
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
           +L +F+DLLD++F+LDP KR+TVSQAL HPFITG
Sbjct: 754 LLVHFRDLLDRIFILDPQKRITVSQALAHPFITG 787

[Close]

BLAST of Spo20231.1 vs. TAIR (Arabidopsis)
Match: AT3G53640.1 (Protein kinase superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.300e-8
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 1


		  
Query: 1   MLANFKDLLDKMFVLDPDKRLTVSQALNHPFITG 35
           +L +F++LLDK+F LDP KRLTVSQAL HPFITG
Sbjct: 608 VLVHFRNLLDKIFTLDPQKRLTVSQALAHPFITG 641

The following BLAST results are available for this feature:

BLAST of Spo20231.1 vs. NCBI nr
BLAST of Spo20231.1 vs. UniProtKB/TrEMBL
BLAST of Spo20231.1 vs. ExPASy Swiss-Prot
BLAST of Spo20231.1 vs. TAIR (Arabidopsis)

BLAST of Spo20231.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902237728\|gb\|KNA24912.1\|	1.4e-10	100.	hypothetical protein SOVF_0112...	[more]
gi\|828305847\|ref\|XP_012570219.1\|	2.6e-9	94.1	PREDICTED: serine/threonine-pr...	[more]
gi\|694311179\|ref\|XP_009356555.1\|	2.6e-9	97.0	PREDICTED: serine/threonine-pr...	[more]
gi\|658008985\|ref\|XP_008339690.1\|	2.6e-9	97.0	PREDICTED: serine/threonine-pr...	[more]
gi\|922408211\|ref\|XP_013470206.1\|	3.4e-9	94.1	Serine/Threonine kinase domain...	[more]

BLAST of Spo20231.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S1B0_SPIOL	9.6e-11	100.	Uncharacterized protein OS=Spi...	[more]
A0A0E0P0B0_ORYRU	1.8e-9	62.5	Uncharacterized protein OS=Ory...	[more]
A0A0E0P0B1_ORYRU	1.8e-9	62.5	Uncharacterized protein OS=Ory...	[more]
A0A072VS25_MEDTR	2.4e-9	94.1	Serine/Threonine kinase domain...	[more]
A0A0E0D5H9_9ORYZ	2.4e-9	62.5	Uncharacterized protein OS=Ory...	[more]

BLAST of Spo20231.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo20231.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT3G25840.1	4.3e-10	79.4	Protein kinase superfamily pro...	[more]
AT1G13350.2	8.1e-9	70.5	Protein kinase superfamily pro...	[more]
AT3G53640.1	2.3e-8	73.5	Protein kinase superfamily pro...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 4..34 score: 1.8
None	No IPR available	GENE3D	1.10.510.10		coord: 4..35 score: 1.

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0048571	long-day photoperiodism
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009611	response to wounding
biological_process	GO:0016246	RNA interference
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0050789	regulation of biological process
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006996	organelle organization
biological_process	GO:0043933	protein-containing complex subunit organization
biological_process	GO:0006396	RNA processing
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0030001	metal ion transport
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0048825	cotyledon development
biological_process	GO:0000186	activation of MAPKK activity
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0010104	regulation of ethylene-activated signaling pathway
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process	GO:0000165	MAPK cascade
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016020	membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0000932	P-body
cellular_component	GO:0005669	transcription factor TFIID complex
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005829	cytosol
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004709	MAP kinase kinase kinase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0004707	MAP kinase activity
molecular_function	GO:0019829	cation-transporting ATPase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04409	0.73	Barchart \| Table
Spo06873	0.72	Barchart \| Table
Spo26272	0.72	Barchart \| Table
Spo02208	0.71	Barchart \| Table
Spo21394	0.71	Barchart \| Table
Spo09711	0.69	Barchart \| Table
Spo17039	0.69	Barchart \| Table
Spo22091	0.69	Barchart \| Table
Spo13250	0.69	Barchart \| Table
Spo03878	0.68	Barchart \| Table
Spo00893	0.68	Barchart \| Table
Spo01128	0.68	Barchart \| Table
Spo26910	0.67	Barchart \| Table
Spo14369	0.67	Barchart \| Table
Spo15994	0.67	Barchart \| Table
Spo19394	0.67	Barchart \| Table
Spo25808	0.67	Barchart \| Table
Spo23496	0.66	Barchart \| Table
Spo13815	0.66	Barchart \| Table
Spo12084	0.66	Barchart \| Table
Spo21129	0.66	Barchart \| Table
Spo11835	0.66	Barchart \| Table
Spo16679	0.66	Barchart \| Table
Spo11693	0.65	Barchart \| Table