Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATATTTCGAGATAGCAAGTCAAACACTTCCTAAAACAAGAAAAGAAGCCATAAACTCCATAGACTCTTATCCATCATCATCGTATTTTTTACTAGACCTCAAAAACTCACCAAAACCTTCTCAAAAATGGAGATCTTAACGCTCTCAGCTACTCTTTCTCTCTCCTCCTCCCAAAACCCCACACACCTTTCTTCCTCTAAATCCTCCTTATTCCTCAATCACACCACCACCACCGCGTTCTTCAGATCCGTCAACACAACGGGCCTGGGCTTGAGTGCCCGAACCCGTCCTACTAACCGAACTCGGAGGGGGTTCTGTTGCAACTCGTTGTTTGGGCTTGGTGTTCCGGAGCTCGCGGTCATCGCCGGTGTTGCGGCTCTTGTGTTTGGCCCCAAACAGTTACCGGAAATTGGCCGGAATTTCGGCAAAACCATCAAAAGTTTTCAACAGGTTAGTCAACCACATTTCAACTTGTTTTTTTTAATTTTTTTTTTTCTAAAGTATTTTATTCTTCAATTCTAAGGTAGCTGATAATTTTTCAATCTATTGTTTTATTGTTTATGATGTGTTTTTGAAGTGACTTCTGGAAATTGTCTAATTGATGAATGAGATGAATTAATATTTAATAGTGTCCAAATTGATGACCCGAATTTGATGTGAGCTAAAGTTTGGATGCGGAATGTGGTATGTTACCGAAAACCGAAATCAGTTCTATTATGATGGAGTTGTTTGAGGTATTTAGGAATGTTTGGGTAGAGGTAGGATATTGGTGCTTGAACTGCTTGGTTAATCAGTTTTGTAATATTGCTATGATAGGTGTCTATGTGTCAATCATTGTAGGAAGAATTAGAAAAATTAGAGACAGAGAAAGCAGCATTCTTGAAGCTAGTTGGTACAAAATTAATGGTACTGGTGTTGTGGGAATAATTAGAAATTAGAGATAGAGAAGGCATTGTAATCCTTGGTTGCCGAATTAATGGTACGTTTACTTGAATCAGTAATATGACAATTAAATACAGACGTAGGGAGGGAGCATTTGAATTTCTGTTTAGTTAGAGAAATCTGTCTTCTTTTAATTTATTTCTGGAGGTTGAGAAACTTGTATACACTAGGGCACAACCTCTCTTATTGTATTCGCAAGTCCATACATATTATGGGGAAGGGATCCGAAGTTGATCCGTGTTGAAGCCCTATATCAATAGAGCTTTTGCTTGATATGTCCACATGTCATTCTCATTCTACTCTTGGCACTGTTAACTCAAATACATGCAGTTGGAAATTTGGAATGCCCTTGGCCACTAGACACCTTCACATTTTTCTTGGTCCATTGTCATAAAACCATGTACATTTGTTTATCCTTGTTCTTTCATTAAAAGCATCTTAAGAAATGTATGACTTCCATATACGATATACCTTGCATCAATTAAATCTACTTGTAGATGTGTTTATACCTATTGTACTTCTGTTATGCTTCTTCAGAAATGTATGGCTTCCATATAGGATCTACCTTTCATGAAACCAGATCTTAGTTTTAAAAAGCGCGAAGCGCAACGAAGCGCAAAAGGGCCCGGGAGCTTAAGCGCAAAGCGAAAGTGCACGCTTTTCGTAGGCGAAGCGCACTCGGAAAGAAATAATAAAATTTCAAAACTTCGGAAATCATGGAGAAAATATGGAAAGAAAAGATGAAAAAAAAAAAATCGAAAAGATGAAAGAAAAATTCAGAATTGACTGGAGAAATCCAACGAGAAGGCTAGAGAAATCTGGCTACGGGAGAAAATTGCACTAGAGTTTTCAAAACCCCCCAAACATTCTCTTTTTAAAAAAAAGAAATCATGTGATACTTTAAAAAAGAAGATTAGAGTTACTTGGCTTTATTTTTTAATTAAAAAGAAGAGTTTGTTGTGCCCAGACTACAGGAAGCGCAGCTTTGCGCTGCTTCCTGTATGTCGCTAAGCTTCTGCTGCCAGAAACGTTCTTTTGTGAGCTTCCGAGCTTCCAGGACTTTAAGCGCGCTTTTTAAAACTAAGAACCAGATACCCCTTATCTTTCTCTTCTCTAATTCTTCGCCGTTCTTTTGGATAATTTTTTTGGTTTATCCCCCAACAGTTTTTAGTATTAGAAAGAGGCTCGAGAACTTATAGGGAATCATTGGTGGTATGAACATGAGAGATAAAAGGGAACTCTACAGTTTTCTAATGTTGCAAAAGTAGAAAAGGTTACGGACTAAGAAAATTATTCTTGGTAACGAGGCAAAGGAAACAGTTGTAAAAGCTTGAAAGAGAGCGTAGTAGTAGACCAAAAAGGATAAAAGAACTTATATAGGGTGCAAAGGGCTAGGGAGTGAAAATCAAGGAACTTTGATAAAGTAAAGTTGTATAAAAAATGAAGTAGGAAGATTCTTGTGGATGAGCCATTGAGGTCAACTATCAAAGAAAAGTAAAAAGATGTACTTTTATTAGCTTTCCGATGGATCAGGGAGAGAAACATTTGCTTGGAAGAGCTCAATGAATCTGGAACTACAGTTTTTTCCCTTATACTACGAGGAAAGAAGTCAAAGAAGGTGAAGTTAAACAAAGTGGGACGTCAGTAGGATCTAATGATAGACCCATAGAAATATTAGGTGAAGAAGGCATTACATGGCCAACAAAGCTTTAAAATATTATTTTAGGGTTGACATTATACGTCGGCTTTACGTTATAATTCCTTCATACAAGATTAAGAGGGGAGTTCAAAGTGGTTGCAGGCTAGCAGCTATAAGGGTTATGAAGTTACTCAACCATATGAGAAAATAACCTGGATCCGGACATGTTAGTTAAGAAATTGTAGCCTTGGGAAACATTTCTGTGTATTGAGAGTGTAAACATCTCATGGGGGATTAGTTAAAAACTGGGAACAAAATTATAGTATAGGGATATCCGGACATGGCTGAACTAGTCTAGTGTGTGTCAAGATAAATATGTGTTGGATCGGTGAAAAGGGGGAAAACTGCTACAGTCTTCTCAAAGTGTGGGGCGTTCCGCATTCATGACACAGATTAGATCAAGACCCATGATCTTTTGGCTTATTTAAGTTGGCAATATCTTGGGCTCACTTAAAGTCTAAAATTCTGGAAGAAAACCCTATTTTAGTGATCGAGAATATTGTCGATAGTGTAAGTTTTCATCATATAAGATCTATAATATTTAAGATTCAGAAGTAGGTATTCTTGGACTTCATTCTTTCACAAATGAAAAGAAAAGCAGCTTTTCATGCAGTATTAACACCAACTGGAGGGTTTTTTTTTGAGAGCGATGAATCAGGTGATTAGGAAGAATGCGGGAGTTACAATGATTGAGAACTAGATGAAGGAGAATCGACTAAGGTGGTTTGGCAATGGAAGACGAAAGTCAAATGATGCGCTGGTTAGAACGATTGAAGAGTAGCAAATGGATGGAATTGTGAGGGGTAGGGGAAGACCAAAGCAAAAATGGAAGAGGGTGATTGAGAGTGATATGAGTTCATTGGGGATTGAGGAAAATATGGCGTTAGATAGGGCGGGGTGGAAGGAGATAATACATGCCGATGACTCAACATGACTTCTTTTCCATCTCTTGCTCTTTTTCTATTTTAATTGAAAACTTCTCTCTTTTTCTTATTTTTTTCAAAACATTTTTAGCCTCTTCTTTAAACCGTCCTATCCTATTTTGCAAAGATTGACTTCCAACTGCTTATTCCATGAGAATGCATCTTGTGCTCCGGCAACCCAATCTTCCTTATCATACCTCTATATCTACCTTGGCTTGAAGTTCCCATTTTTGGTATGGATAAGACCTAACTGAAACCCTTTTGTTTCTCTTTGCTACCCTTTGGAAGTCGCTTTTCTGTCCTCTCAAATTTGTGTGCGACACTGGTCGGAATAGTGAACAAGGACTTGAAATGCCTGCACTATGCTAGTTAAAGTATTCCCTTTTAGTAATAGCTTATTTTCATCTTGAAAGCCACTTTTTAAATCCCTTTAGTCCTATATTGTCAGATACCTGATCAATTTGTCACTAAGTAGGCATTAAGAGTAAGATGAAAAGGTTATCACATTCTAACTAGGAATCAAATCTTCCTAACTGTGTCTTGATATGACGTATTTAAATACATACTAGCTTCATTTGTTTCTTTAAGCGTGAGTAGCTATTGTGATTGGATAAAGATATAAATTTTCCTGTTCTCTTTCTTTTTCGCTAAAGGGCACTTAGCCTTTGCACTAGTTCAGGCATTGGTGGGTCTTGGCACAAGGACCCTTTGCAAGGTTGTTTCCTGTCTTGGTCCTTAAACCCAGCTGATTACTGCCTCCAGTTGAAGCAAAGAAAATTTATTTTTTGAGTCTGCATTTGGTATTACAGCTCAATGGTTCCAGGCCATCACCAGATTAGAATTAAGCATTGGGCAAATAGCAGTCGCACCATCTTTGTCCAAAATCTGTAAAAATGATAATTTTGAGGTTGTTTAACCTTATCCAGAATCTGTTCAAGGTATGTGAAACTGGGAAACTGATTTGTATGCTCAGGTATACTCCGTAAGATACAAGTATAATTTACTGGTTTTTGCGAGTTGGAATAAGGGGATGTGAATATAACTCTTTATTGTTGTTGTTAGGTCTGTGGCTTAATTTGAAGTTTGTTTTATTTGCATACTAAGCAGTCATTTATTGTTTAAGGACCTTCTCCTTGGTTACACGGTTATACCTTTACAAAATTGCTATTTTTTTTATTTCAATGATTCTAACATCCATATGTTAATTGGCTTCCTTTCCATTCGCAAGAATTTACTATTTTCATCTCATGCTTTGATTTGACATGCTAGGATGCTTAGCTTGAAACTTCCACCTTTTTGTTTCTTTTCCGTTGACTTGACAGATGTTAGGGAGGTAGTCTATGCAAATACGCCGGAGTTCACTGTGTATTGATTTTGATCATTTGGTGTCTGCCTTGTTGGTTTCTTGTATTTTTTTGTACGTCTAACAAAAGCTAATGAATATCAGTTACCAATTTGAAAGGGTTCTTGCTTCTTGCCTTTTCTTTCTTTCTCCCCCTTTTTTCGTATGAGGTGTTTTTTATGCTATGGTGCCAACAATTGCTGAGTTGATAGGATGAATTGTTCTTCATTTTGTTCATTGTGCATGTTAAGAGTTTCTGAACCCTGATCACTTTTAAGTCCTCTGTTCACATACAAAATATTACAGGCCGCAAAGGAGTTCGAACAGGAACTTACAAAACCAGAAGACTCTGAGTCTTCTGACAAGGTGATTGAGGCAAAATCAGCATCAGAAAGTTCAGAAGAAAAAGAAAATGTTGCATCGTCGTCTAAAGAGAGTTCTTGAGATTATTCATGTATTTTTTCTTCCACTTCATTTAATCCGAATTTTTTTCTTGTATTCGTGACGGCCAATGTGATGGTATGTATAATCGAATACTTGTGTAAGAGTTCCGTTCATATCAAGCGCAATTTAGCAAATTAGCAATTAGGCATTAACAGTATTAGAAGAATTTATTTTTGAAGAAGATGGTATATCGACATGCCGTCAAGTCAACAATAAAGATGTGTTAAACCACTTCGTATGTTTATGGATGTGTTCACAAGTCTCGGAGTAGGTGTGCAAATGTGCCACCTTTAAACCAAATGCATAAATCAAGATTAATAACAGGTCGGAGACACTAGTTCCGGCAATTACCCTATCCATCCAGAACTAACCGGGTATATTTTTTTTGGGACATAAGGCAGAACTAACTGTTACACTATCCTAACCTTTCATAATCAAAGTTGACTACATCACTTTATTTTAAACAAAATATAAAAAGGCCAGGTGTATGGAGTAGGATCAGAAATTCATAATATATTTCCTCTGTTCTTTTTACTTGTACCATGTAGGTTGGATACAAATAT ATATTTCGAGATAGCAAGTCAAACACTTCCTAAAACAAGAAAAGAAGCCATAAACTCCATAGACTCTTATCCATCATCATCGTATTTTTTACTAGACCTCAAAAACTCACCAAAACCTTCTCAAAAATGGAGATCTTAACGCTCTCAGCTACTCTTTCTCTCTCCTCCTCCCAAAACCCCACACACCTTTCTTCCTCTAAATCCTCCTTATTCCTCAATCACACCACCACCACCGCGTTCTTCAGATCCGTCAACACAACGGGCCTGGGCTTGAGTGCCCGAACCCGTCCTACTAACCGAACTCGGAGGGGGTTCTGTTGCAACTCGTTGTTTGGGCTTGGTGTTCCGGAGCTCGCGGTCATCGCCGGTGTTGCGGCTCTTGTGTTTGGCCCCAAACAGTTACCGGAAATTGGCCGGAATTTCGGCAAAACCATCAAAAGTTTTCAACAGGCCGCAAAGGAGTTCGAACAGGAACTTACAAAACCAGAAGACTCTGAGTCTTCTGACAAGGTGATTGAGGCAAAATCAGCATCAGAAAGTTCAGAAGAAAAAGAAAATGTTGCATCGTCGTCTAAAGAGAGTTCTTGAGATTATTCATGTATTTTTTCTTCCACTTCATTTAATCCGAATTTTTTTCTTGTATTCGTGACGGCCAATGTGATGGTATGTATAATCGAATACTTGTGTAAGAGTTCCGTTCATATCAAGCGCAATTTAGCAAATTAGCAATTAGGCATTAACAGTATTAGAAGAATTTATTTTTGAAGAAGATGGTATATCGACATGCCGTCAAGTCAACAATAAAGATGTGTTAAACCACTTCGTATGTTTATGGATGTGTTCACAAGTCTCGGAGTAGGTGTGCAAATGTGCCACCTTTAAACCAAATGCATAAATCAAGATTAATAACAGGTCGGAGACACTAGTTCCGGCAATTACCCTATCCATCCAGAACTAACCGGGTATATTTTTTTTGGGACATAAGGCAGAACTAACTGTTACACTATCCTAACCTTTCATAATCAAAGTTGACTACATCACTTTATTTTAAACAAAATATAAAAAGGCCAGGTGTATGGAGTAGGATCAGAAATTCATAATATATTTCCTCTGTTCTTTTTACTTGTACCATGTAGGTTGGATACAAATAT ATGGAGATCTTAACGCTCTCAGCTACTCTTTCTCTCTCCTCCTCCCAAAACCCCACACACCTTTCTTCCTCTAAATCCTCCTTATTCCTCAATCACACCACCACCACCGCGTTCTTCAGATCCGTCAACACAACGGGCCTGGGCTTGAGTGCCCGAACCCGTCCTACTAACCGAACTCGGAGGGGGTTCTGTTGCAACTCGTTGTTTGGGCTTGGTGTTCCGGAGCTCGCGGTCATCGCCGGTGTTGCGGCTCTTGTGTTTGGCCCCAAACAGTTACCGGAAATTGGCCGGAATTTCGGCAAAACCATCAAAAGTTTTCAACAGGCCGCAAAGGAGTTCGAACAGGAACTTACAAAACCAGAAGACTCTGAGTCTTCTGACAAGGTGATTGAGGCAAAATCAGCATCAGAAAGTTCAGAAGAAAAAGAAAATGTTGCATCGTCGTCTAAAGAGAGTTCTTGA MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKPEDSESSDKVIEAKSASESSEEKENVASSSKESS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20387.1 vs. NCBI nr
Match: gi|902234235|gb|KNA23378.1| (hypothetical protein SOVF_024920 [Spinacia oleracea]) HSP 1 Score: 271.6 bits (693), Expect = 8.700e-70 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
BLAST of Spo20387.1 vs. NCBI nr
Match: gi|731328033|ref|XP_010674831.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 200.3 bits (508), Expect = 2.500e-48 Identity = 122/153 (79.74%), Postives = 127/153 (83.01%), Query Frame = 1
BLAST of Spo20387.1 vs. NCBI nr
Match: gi|1009117521|ref|XP_015875362.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 112.1 bits (279), Expect = 8.800e-22 Identity = 75/147 (51.02%), Postives = 94/147 (63.95%), Query Frame = 1
BLAST of Spo20387.1 vs. NCBI nr
Match: gi|922561626|ref|XP_013609121.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like [Brassica oleracea var. oleracea]) HSP 1 Score: 110.9 bits (276), Expect = 2.000e-21 Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 1
BLAST of Spo20387.1 vs. NCBI nr
Match: gi|15241912|ref|NP_198227.1| (sec-independent protein translocase protein TatA [Arabidopsis thaliana]) HSP 1 Score: 108.6 bits (270), Expect = 9.700e-21 Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1
BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RV82_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024920 PE=3 SV=1) HSP 1 Score: 271.6 bits (693), Expect = 6.000e-70 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNI1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g081850 PE=3 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 1.700e-48 Identity = 122/153 (79.74%), Postives = 127/153 (83.01%), Query Frame = 1
BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A0D3E0Z8_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.400e-21 Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 1
BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A078EL12_BRANA (BnaC09g02780D protein OS=Brassica napus GN=BnaC09g02780D PE=3 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.400e-21 Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 1
BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: B9I5F5_POPTR (Thylakoid assembly family protein OS=Populus trichocarpa GN=POPTR_0013s03820g PE=3 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 8.800e-21 Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 1
BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_ARATH (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana GN=TATA PE=1 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 6.100e-23 Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1
BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_ORYSJ (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica GN=TATA PE=2 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.100e-19 Identity = 66/112 (58.93%), Postives = 76/112 (67.86%), Query Frame = 1
BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_PEA (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum GN=TATA PE=1 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.400e-19 Identity = 72/148 (48.65%), Postives = 93/148 (62.84%), Query Frame = 1
BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_MAIZE (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays GN=TATA PE=1 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 5.300e-19 Identity = 63/90 (70.00%), Postives = 68/90 (75.56%), Query Frame = 1
BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_SYNP6 (Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 5.300e-11 Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1
BLAST of Spo20387.1 vs. TAIR (Arabidopsis)
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106) HSP 1 Score: 108.6 bits (270), Expect = 3.400e-24 Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1
BLAST of Spo20387.1 vs. TAIR (Arabidopsis)
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106) HSP 1 Score: 53.9 bits (128), Expect = 1.000e-7 Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20387.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo20387.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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