Spo20418 (gene)

Overview
NameSpo20418
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 29545088 .. 29546963 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAGCCTGGCCGCCCCGTCCCTCTTATGCTTTGCTACTATCCAGTGTATGAAAAGGTTATAATTGGTAGATTTATAACTGTTTGCTTGTCCAATTTATAGTTATAGATGCGGTCCAGTTTGTTGGTGAAGTAAAATGGTCATGTTACCGCTACTTCTAGTTTGTCAATGTTGACAGTTGTGCTTTATTATAATATAGCTTATGGTTTTCTGGTGCTTCTAGTTTCTTGTGCGACCAAGTTTTACTTGACATGTATGCTGTGTTTTCATATGGCAAACAATGCTTGGTAGTTGTTATTAGACGCTTGTTCTTAATTAGTTTTCATCTCTTTTTCCGAATATGTTGCCGAATTTTAATCTTAATATTCGTTGTTAAATAATTTCCTCTTGCTGTTTATACGTGGCTACTAAGATTTTCTCCTGCAGTTTGTATTCTTGTTATTGAGAAATCTATTGTAAGTTTTATTTCGTCTGCTATATATAATGCTTGGCAGCCTGTGAGCAGTTGTTTCATCTTGATTGAGGGAAGTTAGGGGAAACTATTGCCGTGTTTCCACAGAGGCCTTTGTTGCGCTTAATCAATCGGTTTGGAATTCTTTTCTGCCACTATCCTTTGATTTCAGGCAAGATAAATGGTGGTGTTTCTAAGTATCTCTTCTGTTGACATTTTTGCCTTCTACAAGTTCGTTGGCTCACTGTCATACCTAACAGTTTGGGATCAAACTAGGGCTTCTATGAGAGGTTACAGCCGTACGGCATAGCATATGTTTGTGGCTGTTACTCTTTCACTGTGCATTTCAAGCTTGATATCCATAGTTAACCTGGGGTTTTCTGTAAATAATCATAATAAGATGATATTTGTTCCATTCACAGTTTTGATATTGTTCTTTCAATAGGTGAAGTGAAGAAATTATGGAGAGTACGGATTGTGCTAGCTCTATAGCGCATGTTTCTTCTGGATAGTTCTGGCAGCTCAGAATCATATGGTTCCATGGTTTGAACTAGCTGGTGGAGTTGTATTGTTTCTAGTCTCTTGCCAGATTAGTTCATCTAGCATCTCTTGAAATGAAGTAGACCTTTGCTTGGGTAAATTAGACATTTATTATTGCATTTAGGGCTGTTTAGGTTAAGAATGCAATTCCCTATTTTTTCCTCATAGCTTACCATCTTATATGCCTTTCTCTTGATTACCCCATTCATTAAGTTTATATTCCACACCCATTAGGGAATCCTTCATTTATCATCTAAACTCATGATTACCTGATTGCTGTTATTTCTCAAATTTTCTTTGCTGAACCAAACACATGATGATTGGTATGCTTACTCAAGTACCCAATTGCCTCATTTTATAACTCTTTATTACTCGTGATATTTTATTCGTTTCTCTTGCCTTTCATTGATCCCAGCAAGTGGCTCCTTGCCTCCTCGTGTTATCTTGAACTTGTAATATTTCTTCAGAAGGAATGAGGAATGGGGTCTTATAGTTTTGCTGGATATGTAATAGGTGTTTCCTTTGTGATAAATTTTGGAATGTGAAAATGACTTGATTTGTTGAATTAGGTTATTATTCTTCGGGTTCTACTACCTCATGCTCCTCATGATGAGTTGTGAAAGGAAGTCTTAGCTCAAGTTCAGCTCGTTTTACTGGTTTTGGTTTGGATTGTCTATTTTAGGTTGAATTTTGAGGAGTAAGAGATCAGTAGTGAAGGTATTTTTGGATCATTTGGCGGTTTTTAGTTTTCTGCAGAGGTTGTTGATATGGGAGAAAAATCATTTGCACTACAAGTTGTGCAGTGTATTTATAAGAAGTTTAGGTCTCAGTGTAACATGTGAGTTGAAAGGAAAAGGTGGTGTGGTCGATTGGTTTATGTGA

mRNA sequence

ATGAATCAGCCTGGCCGCCCCGTCCCTCTTATGCTTTGCTACTATCCAGTGTATGAAAAGAGGTTGTTGATATGGGAGAAAAATCATTTGCACTACAAGTTGTGCAGTGTATTTATAAGAAGTTTAGGTCTCAGTGTAACATGTGAGTTGAAAGGAAAAGGTGGTGTGGTCGATTGGTTTATGTGA

Coding sequence (CDS)

ATGAATCAGCCTGGCCGCCCCGTCCCTCTTATGCTTTGCTACTATCCAGTGTATGAAAAGAGGTTGTTGATATGGGAGAAAAATCATTTGCACTACAAGTTGTGCAGTGTATTTATAAGAAGTTTAGGTCTCAGTGTAACATGTGAGTTGAAAGGAAAAGGTGGTGTGGTCGATTGGTTTATGTGA

Protein sequence

MNQPGRPVPLMLCYYPVYEKRLLIWEKNHLHYKLCSVFIRSLGLSVTCELKGKGGVVDWFM
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20418.1Spo20418.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo20418.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20418.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20418.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20418.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046283 anthocyanin-containing compound metabolic process
biological_process GO:0046786 viral replication complex formation and maintenance
biological_process GO:0009649 entrainment of circadian clock
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0009641 shade avoidance
biological_process GO:0009647 skotomorphogenesis
biological_process GO:0008152 metabolic process
biological_process GO:0006281 DNA repair
cellular_component GO:0009705 plant-type vacuole membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000152 nuclear ubiquitin ligase complex
cellular_component GO:0016604 nuclear body
cellular_component GO:0005737 cytoplasm
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0005488 binding
RNA-Seq Expression