Spo20447 (gene)

Overview
NameSpo20447
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibonuclease III-like protein
Locationchr6 : 29633496 .. 29639360 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATAAAATAAATAAAATCCGAGAAATTCAAACAAAAATGGCGTTCGCAAGCTCTAGAGTGGTGCTGGTGCGAGCATCATGGGACACTCAGCAAAGATTACCTTACAACCCCAACACTCCTCGCAAAATCAAGAACAAAACCAACTCCAACTCCAACTCTCTCTCCTCGTCTTCAATTTCAACCTCTCAAAATAATCAGAGCCCCCGTTTGCAGATTGATGTTGACGAGCTTCTCAAGTTCAACCCTATAACCCCTAGCCAAGGTATTAAAGACTCCATTTTTTCTGCATTTTTTACCTTCCTGGTTTTATTTGTTGCTAAATGTAATGATTCTATCGGAGTTATAGTAATTTTGTTGAATGGATTAGGAATTTTGGTGATAATGACACTACAAATTTGTTGATTAGAAAGGGGGGTTTCTGTTATTTTTTTTGCTTAAATGTGATCACTGTCTCAATCTGAAACAGTTGGGTGTGTTTTTCATCTGGGGGTGTGTTACTTTTCTGAAATTTAGTTTAGTTTTTGTCTTGAAAAATGATGGCATAGCAATTTTAGCTAATAATTTGCTCATACAATGAACTACATTTAAGGGGTTGTAGTTAGTTTGGTGAATGGTTGTGAATTTCATGATTTTTCTGGTGAAAGTATGTTTCTTTTTGAATGGAACTTACGCTTGGTCGGGAGATGGTGGCTGGTAAAGGTCATCCATTATAGTATCAAATTCTAAGGGTTATGATTATCTGATAAGCAGTTAACTCGGAGGAGCCGGCATACCTGGGTTATGAGAGATGGTTGCCAAGCGCACCGAAGGTGGAGAAACCTCGGTCTACTCATAATGCGGCTTCCTTGGCATATATTGGAGACTGTATATATGAGGTATGATTAAAGTAATATCTATCACTGTGTATGTTAGCATCATGTGAACACATTGAATTCCATTAAATCAAATGTTTATAATTGGTTAAAAATGATACACATTGTATATGAATAAGGTTTATACTGCTGATAATCTGATAATTTCAATTTCTATAGTAAGTGCTTTTCGATTGCTTGAAATATTAATTGTTACAGTAGATGGCTAAGAAGGATAGTGATCATTGATTACTGCTTTAAGATGATCATTTGTTGTGACTTGTGAAGCGAGTAGTGTAGGAAGACATACCATTTCATTAATTGTTCATTAGCTTTTTAATACTTTTTCCATTTTATGACATTGGAAAATTAAAGTGGGACAGAGATAAAGTCTATGATTCAATCACGTAGCTCTCAACATATACATGGAGGATGCATTTTTCTTTTTTTGTGTGTTGGTGGGGGGATAAGGCTTGGGAGTTGGGGCTTTTAGATCTTTGAAGAAGTCTGTAGATTCCTTAGGGTTTCCCTCCTACTAGATTGTAAAATACAAATAAACCAACATTGCCTACCCCATATGGGGATATTGATTTTTAAAGCGGGTTGCATTAGCTTAAAACGGCTTGTAGCTGTTATTCTACGTATGAAGATAAATAATTTATGTCTTATGTCAAATTGCCAATAAAATTTTGTTGCTTACTGTTACCTTTATTGAGATATGCAGTTGTATGCTCGGAGGCATTTTTTAACACCTACACTGAATATTGAGGTATACAACGATCGTGTGATGGCAGTAGTACGGTGTGAAGCACAGGTCTGTTATTGTTGCATTTTGAAACTGGATCTCAAGTTTGTGGATGTCTTAGATAATGAAAATATTTTCTCTCTCAATCTCTCCTTTAGATTGTAAAAATGAAATATTTTTATCATTTAGGAACTTCTTTAACGTCTTATTGGACTTGACACTTCCGTAATTACTTTTTTAGATGAATGCTTGATGATGGTAATATATGTTTGGAAAGGAAAACATCCCAACCTTCCCCTCTTTCTCCATACAAGCCTTCTGTGGAATGCCAGTAGAACTTGTGCTATTTGATAACCATAGTAATGTAGATAGGAATTGTTGTTAATTGTATTTGGAGTCCTTTGGGCCTAGGACTAAGCCTGCTCCTGGGATTTTGGAGGCGGGGGGAATTTTCCACCAGATCTTAGAACATCTTGTTGTGTGATGAAGATTGAGCACCTAGTCACTCTGATATGTATAGTTACAGATCCCACCGGTTGCAGACCTTGGGATGATTGATGTGCAAGCAACTTTACCCCTAAGTAGTCCAAATTCTAAAGTATGAAGTAGTACAAAGACTATCTCCAAAGACTGATGAATATACTTGGAAGGTTTATAAAACTCCTTCAAAAGAGGACACAATGCAGCTAGTTTGAGCTGTTTCAAAATTATCTTAACTGTCTTTCCATTTCTGGTAAAATATGAAGTACGATTTATCAGATGCCAATTAGAATTCTCATCTTTGTGAAGGAGGATTCTCTTACTTACAAGGCAGCAATACCTGCTCACTACATTACACACACGGTCGGCAGATAGCTTCTCTAAATCCATAATGTTATTGCCCATACTACAATGATCCGTCTTTCCGACCTCATATTCTCTTATATTCTCGTCTAGCACTACAGAGGAGGTGAATGTTTTTTTGTTTTTTTTTCGGGGGTGGGGGGTCGGGGTGGGTGGGGGGATAAGAAAACGTGTATAAGAAAATGCGAGGATTTTCTATCTCAGTCCAATTCCAGAAACTTGCAGCCTTGAAATATCGTTGCAATTTATGTTTTCGTTCAGTGTGGTACCCTCAAGAAGCTTAATCCTTCAACACTACAAAAATAGATGAGTAGTAAACCTAAAAATGAGTTAGATCAGTGTAATTATGTTTCAAAGTGTGTTCTTCTTTGCAATAAGCCACTGACTATCTAGGAATTTGGGTCTACTATATCAGTATTTGTTGTACTGCTCTGGGACTCATGTTATAGACATTATACATATTGTGTTACTTCTTTGTCAAGATCTGTTGTTTCTTATCTTTATTTGCTGTTTTGCAGGATGCCCTGCTTCAGAAACTTAGAAATGAGGACTTTTTGTCAGAAGAAGAAAGGTATTTTGTCATTCATTTTTTGTGCCTAATGTTTAAGAAATGGCCATCTGCACTGCATACTGCCTCACTGTGATGTCATGACGGCCTTAACTCCTTCACGACAGAGTCCAGGCCCTACATGATGGACTATGAGAGGAAAGAACCCCCTTGTACTTCAAAGGGGTGACTGAGGCCCAAGAGTCCAAGACTCTCATATGGAAGTCAAGCTCTTTCTTTCCATGTGGTCTGGGAATCTGGGATTGTTATGTGACCAATTCCTCAATAAAAGTTCTTTCTTTAATTTCTACATTGCTCTTATCAAGTTATTTCAAAGAACCTCCATTAGAAAATAGAAAGGGAGTTGGCTGGGTCCAGGGTCCACATCATGCGACTATTGACCTATGTGTATTAGTTGCTTGATGGATGACTGTCAGAGTATACTTGGATAGATTAATTGCTTTTATCTTGAGGCACCGTTAAGTATTACTTTGACCTTCAATTCCGTCTGTACTAATATTGCATTTGACTGTTTGGAATTGATAGGGATATTCTACGGTGGGGAAAGAACATTGCCTCATCTAAAACACGAACTACAAAACGTGCTGGTGTAGCAGTTTATAACAGAGCTTCATCTTTGGAAACACTGGTCAGTTACTGCACTCAGTTCTATTAAGATATCACATAATACTATAATAGGAAATTTGTGTTTTCAGTTCTGGAATTGAACCCCGTCATATCCCTGCACTCAGTTCTGTTTAGATATAACAGCAGTGAAGTATTGTCTTTTCACATATGGGTTTTAACTTCTTTGTTTTTCCTGTTATATCACATAAAGAATAACTAAGAAGATACCGAAGATTTTTTAATTATTTTAATGGGTAAGGTGGACCCTAACTGAAACTCNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTTAAGCGATCCACATCCTGATCATTAGCCATTGACGGGATTTGATCTCGAGGTTACGAGGTGAGCCTCCAATGAGTGATATTTGCAAATTCTAAGTAGTTTGTAGACCTTGACACTTGTGATGTTTGCTCTACACTTCAGATGGATTGAAACGTTGAGTTATCAAGTGATTATCAGGAAACCATATGAGGTTCAAGTGATTCTACCTTGGAAATTATTCCTATTGAACTACCTGGGGTTCAAATTGGTTCTGCCCCTTAATAACATACAAGTATTTTTTTTAAGTTAAATCCTGTTTATGTGTCCTGTTAACAGTAGGATTGCCTTTGTGCTTGTGCTGAGGGTAGGGGGTCTTTCTGGGTGTATTTTAACCACTTGAACTATAACAAAATGTAATAATGAGTAATAACAGTACTGATTGACTATTATTTATCATTTCGAAGATAATGGTTGTTGTTTCACAAAGGAAAAGACAAAAAAGTGTACCAAATGCTAAAGGTTTGCCAACACCTCAGAAACCATTATTGTTCTGATTAAATTAGGAGTGCATACGGCTGTGGGTTTTTCAGAAAAAATCTTGACTACTTAGCGAGAGTTGTTCACATTTGGCTTACCTTGACGCCGCTGCTTGCAATGATCCATACGTGGTCACAGTTGCTTTGGTATTGTAGATTAAGGCAAGACAGTTCATGTGAAGAATCCACTTCTTTTTCCTGCCATCTATGTTTACTCAGAGTCCGATATGTGTCTGAGTATTAGACTTGACAATTTAACAATAACTTTCCAGATTCTTGATCCAAAATGATGTCACGTCCATATTAGGTATAAAAGATCCAACACTTGAGGTGAAATGAAAGGTCCGAGTAACATAGATGGCAGGGAAAGAGAGCTCTAGTCTTGACCCAGCTCAATTGAATAATACAGTACGATCATAGCTCTAAAATCTGAATTAGCTAGAAAGTGTTGGAAAAGGTGTGGACATGTTTCATCTTTGACTACATAACGGCGTTCATTCACTTAACCTGTTGATGGTGATTTTGTAGATCGGCTACCTTTACCTGACCGACCCAATGCGTTTGGAGGATATGATGTCAAAACTTGGATTCGCAGTGGGTGTTTCCAGCCAATCAATTATTGGGAGTGTAAATGGTAAGTTACTAATAAGGTTGAAATCTCTCTATATACATGGTTGTTTTCTCACGCTTTGATAAATGTAACAAGGCAGCATTTCACTAGACATGTCTTACGATAATTTTATACACCTAACATGCCCGAAGATGTCCGTATAATTAAAAAATAATACTTTCTGATTAAGTAATTGAGTCTTAGAGGGCTAGCATTGTACGGAGTAGCCATTTAGCCTGACTCTTTTTTATCTGAATGTTGGTTCAATCCTTGTGGCAGCGGAGTTGCACAACTTGAAGCAAAAGAAACCAAAAGAGAAGACACGTTTGCTAAGCCGGCCAACAATAGTACCGAGCAGCCTTGATGTAGAGAAAGCATTGAAAGAAAACGAGGTTGACTTGATAGCGTAGAGACATCGACAATAATCAGCTAAATTATGACTTGATTTAATTGGTTATCTTAACACAAATAATTCTAAAATTGGTTCGAAGATGGCAGAGGAGTGTATAGTTTGCTGGATATAGGTTATGTATTCGTTCTCGATCGAACTCAAGTTATAGGTCTTAGTTTCAGATATAATCTGGAATCAGGGTATGTATTTGTTTCCAAGGTAAAGATAAATGACAATTTTATGATTTACTATTATATAATGAAAGAAAATGTTAAGCTACAGA

mRNA sequence

ATAATAAAATAAATAAAATCCGAGAAATTCAAACAAAAATGGCGTTCGCAAGCTCTAGAGTGGTGCTGGTGCGAGCATCATGGGACACTCAGCAAAGATTACCTTACAACCCCAACACTCCTCGCAAAATCAAGAACAAAACCAACTCCAACTCCAACTCTCTCTCCTCGTCTTCAATTTCAACCTCTCAAAATAATCAGAGCCCCCGTTTGCAGATTGATGTTGACGAGCTTCTCAAGTTCAACCCTATAACCCCTAGCCAAGTTAACTCGGAGGAGCCGGCATACCTGGGTTATGAGAGATGGTTGCCAAGCGCACCGAAGGTGGAGAAACCTCGGTCTACTCATAATGCGGCTTCCTTGGCATATATTGGAGACTGTATATATGAGTTGTATGCTCGGAGGCATTTTTTAACACCTACACTGAATATTGAGGTATACAACGATCGTGTGATGGCAGTAGTACGGTGTGAAGCACAGGATGCCCTGCTTCAGAAACTTAGAAATGAGGACTTTTTGTCAGAAGAAGAAAGGGATATTCTACGGTGGGGAAAGAACATTGCCTCATCTAAAACACGAACTACAAAACGTGCTGGTGTAGCAGTTTATAACAGAGCTTCATCTTTGGAAACACTGATCGGCTACCTTTACCTGACCGACCCAATGCGTTTGGAGGATATGATGTCAAAACTTGGATTCGCAGTGGGTGTTTCCAGCCAATCAATTATTGGGAGTGTAAATGCGGAGTTGCACAACTTGAAGCAAAAGAAACCAAAAGAGAAGACACGTTTGCTAAGCCGGCCAACAATAGTACCGAGCAGCCTTGATGTAGAGAAAGCATTGAAAGAAAACGAGGTTGACTTGATAGCGTAGAGACATCGACAATAATCAGCTAAATTATGACTTGATTTAATTGGTTATCTTAACACAAATAATTCTAAAATTGGTTCGAAGATGGCAGAGGAGTGTATAGTTTGCTGGATATAGGTTATGTATTCGTTCTCGATCGAACTCAAGTTATAGGTCTTAGTTTCAGATATAATCTGGAATCAGGGTATGTATTTGTTTCCAAGGTAAAGATAAATGACAATTTTATGATTTACTATTATATAATGAAAGAAAATGTTAAGCTACAGA

Coding sequence (CDS)

ATGGCGTTCGCAAGCTCTAGAGTGGTGCTGGTGCGAGCATCATGGGACACTCAGCAAAGATTACCTTACAACCCCAACACTCCTCGCAAAATCAAGAACAAAACCAACTCCAACTCCAACTCTCTCTCCTCGTCTTCAATTTCAACCTCTCAAAATAATCAGAGCCCCCGTTTGCAGATTGATGTTGACGAGCTTCTCAAGTTCAACCCTATAACCCCTAGCCAAGTTAACTCGGAGGAGCCGGCATACCTGGGTTATGAGAGATGGTTGCCAAGCGCACCGAAGGTGGAGAAACCTCGGTCTACTCATAATGCGGCTTCCTTGGCATATATTGGAGACTGTATATATGAGTTGTATGCTCGGAGGCATTTTTTAACACCTACACTGAATATTGAGGTATACAACGATCGTGTGATGGCAGTAGTACGGTGTGAAGCACAGGATGCCCTGCTTCAGAAACTTAGAAATGAGGACTTTTTGTCAGAAGAAGAAAGGGATATTCTACGGTGGGGAAAGAACATTGCCTCATCTAAAACACGAACTACAAAACGTGCTGGTGTAGCAGTTTATAACAGAGCTTCATCTTTGGAAACACTGATCGGCTACCTTTACCTGACCGACCCAATGCGTTTGGAGGATATGATGTCAAAACTTGGATTCGCAGTGGGTGTTTCCAGCCAATCAATTATTGGGAGTGTAAATGCGGAGTTGCACAACTTGAAGCAAAAGAAACCAAAAGAGAAGACACGTTTGCTAAGCCGGCCAACAATAGTACCGAGCAGCCTTGATGTAGAGAAAGCATTGAAAGAAAACGAGGTTGACTTGATAGCGTAG

Protein sequence

MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQIDVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYARRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNLKQKKPKEKTRLLSRPTIVPSSLDVEKALKENEVDLIA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20447.1Spo20447.1mRNA


Homology
[Close]
BLAST of Spo20447.1 vs. NCBI nr
Match: gi|902228043|gb|KNA20946.1| (hypothetical protein SOVF_047740 [Spinacia oleracea])

HSP 1 Score: 523.9 bits (1348), Expect = 1.800e-145
Identity = 274/277 (98.92%), Postives = 274/277 (98.92%), Query Frame = 1 

		  

Query: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQI 60
           MAFASSRVVLVRASWDTQQRLPYNPNTPRKIK KT  NSNSLSSSSISTSQNNQSPRLQI
Sbjct: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKKKT--NSNSLSSSSISTSQNNQSPRLQI 60

Query: 61  DVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYA 120
           DVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYA
Sbjct: 61  DVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYA 120

Query: 121 RRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTR 180
           RRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTR
Sbjct: 121 RRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTR 180

Query: 181 TTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNL 240
           TTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNL
Sbjct: 181 TTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNL 240

Query: 241 KQKKPKEKTRLLSRPTIVPSSLDVEKALKENEVDLIA 278
           KQKKPKEKTRLLSRPTIVPSSLDVEKALKENEVDLIA
Sbjct: 241 KQKKPKEKTRLLSRPTIVPSSLDVEKALKENEVDLIA 275
[Close]
BLAST of Spo20447.1 vs. NCBI nr
Match: gi|731349627|ref|XP_010686090.1| (PREDICTED: uncharacterized protein LOC104900373 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 344.4 bits (882), Expect = 1.900e-91
Identity = 186/250 (74.40%), Postives = 206/250 (82.40%), Query Frame = 1 

		  

Query: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSS-SISTSQNNQSPRLQ 60
           MA ASSRV +VRASWDTQ+ LPYN N PRKIK    S+  S S+S S STSQ  Q+P+LQ
Sbjct: 1   MALASSRVAVVRASWDTQEMLPYNRNAPRKIKKLELSSLFSTSTSTSTSTSQKKQTPKLQ 60

Query: 61  IDVDELLKFNPITPSQ--VNSEEPA-YLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIY 120
           IDVDELLKFNP  P +  VN EE   +LGYERWLPS PKVE PRS+HNAA+LAYIGDCIY
Sbjct: 61  IDVDELLKFNPTPPRKETVNLEESTTHLGYERWLPSPPKVENPRSSHNAAALAYIGDCIY 120

Query: 121 ELYARRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIAS 180
           ELYARRHFL P LNIE YNDRVMAVVRCEAQDALLQKL  E+FLS EERD+LRWGKNI S
Sbjct: 121 ELYARRHFLAPALNIEEYNDRVMAVVRCEAQDALLQKLNTENFLSAEERDVLRWGKNITS 180

Query: 181 SKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAE 240
           +KTRTTKRAGVAVYNRASSLETLIGYLYLT+  RL+DMMS LGF+VGVS+QS++  VN E
Sbjct: 181 AKTRTTKRAGVAVYNRASSLETLIGYLYLTNSKRLKDMMSILGFSVGVSNQSVLEIVNVE 240

Query: 241 LHNLKQKKPK 247
           L  +KQK  K
Sbjct: 241 LQIMKQKSSK 250
[Close]
BLAST of Spo20447.1 vs. NCBI nr
Match: gi|731349625|ref|XP_010686089.1| (PREDICTED: uncharacterized protein LOC104900373 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 337.4 bits (864), Expect = 2.300e-89
Identity = 186/260 (71.54%), Postives = 209/260 (80.38%), Query Frame = 1 

		  

Query: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSS-SISTSQNNQSPRLQ 60
           MA ASSRV +VRASWDTQ+ LPYN N PRKIK    S+  S S+S S STSQ  Q+P+LQ
Sbjct: 1   MALASSRVAVVRASWDTQEMLPYNRNAPRKIKKLELSSLFSTSTSTSTSTSQKKQTPKLQ 60

Query: 61  IDVDELLKFNPITPSQ--VNSEEPA-YLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIY 120
           IDVDELLKFNP  P +  VN EE   +LGYERWLPS PKVE PRS+HNAA+LAYIGDCIY
Sbjct: 61  IDVDELLKFNPTPPRKETVNLEESTTHLGYERWLPSPPKVENPRSSHNAAALAYIGDCIY 120

Query: 121 ELYARRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIAS 180
           ELYARRHFL P LNIE YNDRVMAVVRCEAQDALLQKL  E+FLS EERD+LRWGKNI S
Sbjct: 121 ELYARRHFLAPALNIEEYNDRVMAVVRCEAQDALLQKLNTENFLSAEERDVLRWGKNITS 180

Query: 181 SKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVN-- 240
           +KTRTTKRAGVAVYNRASSLETLIGYLYLT+  RL+DMMS LGF+VGVS+QS++  VN  
Sbjct: 181 AKTRTTKRAGVAVYNRASSLETLIGYLYLTNSKRLKDMMSILGFSVGVSNQSVLEIVNDH 240

Query: 241 -AELHNLKQKKPKEKTRLLS 254
            A+   +K   P  ++R LS
Sbjct: 241 EAKEFQVKMISPLSRSRTLS 260
[Close]
BLAST of Spo20447.1 vs. NCBI nr
Match: gi|976905317|gb|KVH92957.1| (Ribonuclease III domain-containing protein [Cynara cardunculus var. scolymus])

HSP 1 Score: 279.6 bits (714), Expect = 5.800e-72
Identity = 152/224 (67.86%), Postives = 174/224 (77.68%), Query Frame = 1 

		  

Query: 9   VLVRASWDTQQRLPYNPNT--PRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQIDVDELL 68
           V VRASWDT  RLPYNP+   P+   + T +NSN        T ++N   R  I V  LL
Sbjct: 13  VKVRASWDTHHRLPYNPHRTYPKNPNSLTPANSNPEQ-----TLKSNSPERNSISVSALL 72

Query: 69  KFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYARRHFLT 128
                TPSQV  EE  Y+GY+ WLPSAPKVEKPRST+NAASLAYIGDCIYELYARRHFL 
Sbjct: 73  SRKSPTPSQVRLEE-TYMGYDTWLPSAPKVEKPRSTYNAASLAYIGDCIYELYARRHFLF 132

Query: 129 PTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAG 188
           P L+IE YNDRVMAVVRCEAQDA+L+KL N+  LSEEERD+LRWGKNI+SSKTRT KRAG
Sbjct: 133 PPLSIEEYNDRVMAVVRCEAQDAMLKKLLNDKVLSEEERDVLRWGKNISSSKTRTKKRAG 192

Query: 189 VAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSII 231
           VAVYNRASSLETL+GYLYLT+  RLE++M KLGF+ GVS+Q I+
Sbjct: 193 VAVYNRASSLETLVGYLYLTNMRRLEEIMLKLGFSSGVSTQMIL 230
[Close]
BLAST of Spo20447.1 vs. NCBI nr
Match: gi|802577430|ref|XP_012068993.1| (PREDICTED: uncharacterized protein LOC105631472 isoform X2 [Jatropha curcas])

HSP 1 Score: 271.9 bits (694), Expect = 1.200e-69
Identity = 148/230 (64.35%), Postives = 170/230 (73.91%), Query Frame = 1 

		  

Query: 10  LVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQID---VDELL 69
           +VRASWDTQQRL YNPN PRK K    S  NSL  +   T     SP + +    V ELL
Sbjct: 12  IVRASWDTQQRLSYNPNAPRKPKKNPISQPNSLPPTPSPTP----SPSITLTPQAVSELL 71

Query: 70  KFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYARRHFLT 129
           K N    + V      YLGYERW+PS PKVEKPRS +NAA+LAYIGD IYELYARRHFL 
Sbjct: 72  KRNTKAQAVVTKFGDTYLGYERWMPSPPKVEKPRSVYNAATLAYIGDSIYELYARRHFLF 131

Query: 130 PTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAG 189
           P L+I+ YNDRV AVVRCEAQDALLQKL ++D LS+EERD+LRWGKNI S+KTRT KRAG
Sbjct: 132 PPLSIDEYNDRVTAVVRCEAQDALLQKLLSDDCLSKEERDVLRWGKNIGSAKTRTKKRAG 191

Query: 190 VAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAE 237
            AVYNRASSLETL+GYLYLT+  RLE++M KLGF+ G SSQ I+    +E
Sbjct: 192 AAVYNRASSLETLVGYLYLTNVNRLEEIMLKLGFSTGPSSQMILEEAESE 237
[Close]
BLAST of Spo20447.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN46_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_047740 PE=3 SV=1)

HSP 1 Score: 523.9 bits (1348), Expect = 1.200e-145
Identity = 274/277 (98.92%), Postives = 274/277 (98.92%), Query Frame = 1 

		  

Query: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQI 60
           MAFASSRVVLVRASWDTQQRLPYNPNTPRKIK KT  NSNSLSSSSISTSQNNQSPRLQI
Sbjct: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKKKT--NSNSLSSSSISTSQNNQSPRLQI 60

Query: 61  DVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYA 120
           DVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYA
Sbjct: 61  DVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYA 120

Query: 121 RRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTR 180
           RRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTR
Sbjct: 121 RRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTR 180

Query: 181 TTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNL 240
           TTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNL
Sbjct: 181 TTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNL 240

Query: 241 KQKKPKEKTRLLSRPTIVPSSLDVEKALKENEVDLIA 278
           KQKKPKEKTRLLSRPTIVPSSLDVEKALKENEVDLIA
Sbjct: 241 KQKKPKEKTRLLSRPTIVPSSLDVEKALKENEVDLIA 275
[Close]
BLAST of Spo20447.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BVD1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176730 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.300e-91
Identity = 186/250 (74.40%), Postives = 206/250 (82.40%), Query Frame = 1 

		  

Query: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSS-SISTSQNNQSPRLQ 60
           MA ASSRV +VRASWDTQ+ LPYN N PRKIK    S+  S S+S S STSQ  Q+P+LQ
Sbjct: 1   MALASSRVAVVRASWDTQEMLPYNRNAPRKIKKLELSSLFSTSTSTSTSTSQKKQTPKLQ 60

Query: 61  IDVDELLKFNPITPSQ--VNSEEPA-YLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIY 120
           IDVDELLKFNP  P +  VN EE   +LGYERWLPS PKVE PRS+HNAA+LAYIGDCIY
Sbjct: 61  IDVDELLKFNPTPPRKETVNLEESTTHLGYERWLPSPPKVENPRSSHNAAALAYIGDCIY 120

Query: 121 ELYARRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIAS 180
           ELYARRHFL P LNIE YNDRVMAVVRCEAQDALLQKL  E+FLS EERD+LRWGKNI S
Sbjct: 121 ELYARRHFLAPALNIEEYNDRVMAVVRCEAQDALLQKLNTENFLSAEERDVLRWGKNITS 180

Query: 181 SKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAE 240
           +KTRTTKRAGVAVYNRASSLETLIGYLYLT+  RL+DMMS LGF+VGVS+QS++  VN E
Sbjct: 181 AKTRTTKRAGVAVYNRASSLETLIGYLYLTNSKRLKDMMSILGFSVGVSNQSVLEIVNVE 240

Query: 241 LHNLKQKKPK 247
           L  +KQK  K
Sbjct: 241 LQIMKQKSSK 250
[Close]
BLAST of Spo20447.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ER74_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176730 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.600e-89
Identity = 186/260 (71.54%), Postives = 209/260 (80.38%), Query Frame = 1 

		  

Query: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSS-SISTSQNNQSPRLQ 60
           MA ASSRV +VRASWDTQ+ LPYN N PRKIK    S+  S S+S S STSQ  Q+P+LQ
Sbjct: 1   MALASSRVAVVRASWDTQEMLPYNRNAPRKIKKLELSSLFSTSTSTSTSTSQKKQTPKLQ 60

Query: 61  IDVDELLKFNPITPSQ--VNSEEPA-YLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIY 120
           IDVDELLKFNP  P +  VN EE   +LGYERWLPS PKVE PRS+HNAA+LAYIGDCIY
Sbjct: 61  IDVDELLKFNPTPPRKETVNLEESTTHLGYERWLPSPPKVENPRSSHNAAALAYIGDCIY 120

Query: 121 ELYARRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIAS 180
           ELYARRHFL P LNIE YNDRVMAVVRCEAQDALLQKL  E+FLS EERD+LRWGKNI S
Sbjct: 121 ELYARRHFLAPALNIEEYNDRVMAVVRCEAQDALLQKLNTENFLSAEERDVLRWGKNITS 180

Query: 181 SKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVN-- 240
           +KTRTTKRAGVAVYNRASSLETLIGYLYLT+  RL+DMMS LGF+VGVS+QS++  VN  
Sbjct: 181 AKTRTTKRAGVAVYNRASSLETLIGYLYLTNSKRLKDMMSILGFSVGVSNQSVLEIVNDH 240

Query: 241 -AELHNLKQKKPKEKTRLLS 254
            A+   +K   P  ++R LS
Sbjct: 241 EAKEFQVKMISPLSRSRTLS 260
[Close]
BLAST of Spo20447.1 vs. UniProtKB/TrEMBL
Match: A0A103XLG8_CYNCS (Ribonuclease III domain-containing protein OS=Cynara cardunculus var. scolymus GN=Ccrd_005009 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.000e-72
Identity = 152/224 (67.86%), Postives = 174/224 (77.68%), Query Frame = 1 

		  

Query: 9   VLVRASWDTQQRLPYNPNT--PRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQIDVDELL 68
           V VRASWDT  RLPYNP+   P+   + T +NSN        T ++N   R  I V  LL
Sbjct: 13  VKVRASWDTHHRLPYNPHRTYPKNPNSLTPANSNPEQ-----TLKSNSPERNSISVSALL 72

Query: 69  KFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYARRHFLT 128
                TPSQV  EE  Y+GY+ WLPSAPKVEKPRST+NAASLAYIGDCIYELYARRHFL 
Sbjct: 73  SRKSPTPSQVRLEE-TYMGYDTWLPSAPKVEKPRSTYNAASLAYIGDCIYELYARRHFLF 132

Query: 129 PTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAG 188
           P L+IE YNDRVMAVVRCEAQDA+L+KL N+  LSEEERD+LRWGKNI+SSKTRT KRAG
Sbjct: 133 PPLSIEEYNDRVMAVVRCEAQDAMLKKLLNDKVLSEEERDVLRWGKNISSSKTRTKKRAG 192

Query: 189 VAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSII 231
           VAVYNRASSLETL+GYLYLT+  RLE++M KLGF+ GVS+Q I+
Sbjct: 193 VAVYNRASSLETLVGYLYLTNMRRLEEIMLKLGFSSGVSTQMIL 230
[Close]
BLAST of Spo20447.1 vs. UniProtKB/TrEMBL
Match: A0A067KXD0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24776 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 8.400e-70
Identity = 148/230 (64.35%), Postives = 170/230 (73.91%), Query Frame = 1 

		  

Query: 10  LVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQID---VDELL 69
           +VRASWDTQQRL YNPN PRK K    S  NSL  +   T     SP + +    V ELL
Sbjct: 12  IVRASWDTQQRLSYNPNAPRKPKKNPISQPNSLPPTPSPTP----SPSITLTPQAVSELL 71

Query: 70  KFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYARRHFLT 129
           K N    + V      YLGYERW+PS PKVEKPRS +NAA+LAYIGD IYELYARRHFL 
Sbjct: 72  KRNTKAQAVVTKFGDTYLGYERWMPSPPKVEKPRSVYNAATLAYIGDSIYELYARRHFLF 131

Query: 130 PTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAG 189
           P L+I+ YNDRV AVVRCEAQDALLQKL ++D LS+EERD+LRWGKNI S+KTRT KRAG
Sbjct: 132 PPLSIDEYNDRVTAVVRCEAQDALLQKLLSDDCLSKEERDVLRWGKNIGSAKTRTKKRAG 191

Query: 190 VAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAE 237
            AVYNRASSLETL+GYLYLT+  RLE++M KLGF+ G SSQ I+    +E
Sbjct: 192 AAVYNRASSLETLVGYLYLTNVNRLEEIMLKLGFSTGPSSQMILEEAESE 237
[Close]
BLAST of Spo20447.1 vs. ExPASy Swiss-Prot
Match: MRNC_THEEB (Mini-ribonuclease 3 OS=Thermosynechococcus elongatus (strain BP-1) GN=mrnC PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.900e-16
Identity = 50/134 (37.31%), Postives = 75/134 (55.97%), Query Frame = 1 

		  

Query: 106 ASLAYIGDCIYELYARRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEER 165
           A+LAY GD +YEL+ R  FLTP   I  Y+ +V+A VR E+Q   +  L   ++ +E ER
Sbjct: 23  AALAYFGDAVYELFIRLLFLTPPQRINAYHRQVVAHVRAESQARYMDFL--WEYCTETER 82

Query: 166 DILRWGKNIASSKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVS 225
            I R G+N A+      KR    +Y +A+  E L+GYLYLT+P RL+++           
Sbjct: 83  SIFRQGRNAAAD---GPKRVAAKIYRQATGFEALLGYLYLTNPQRLQEIF---------- 140

Query: 226 SQSIIGSVNAELHN 240
            Q + G + +E+ N
Sbjct: 143 -QLLAGHIRSEVEN 140
[Close]
BLAST of Spo20447.1 vs. ExPASy Swiss-Prot
Match: MRNC_SYNY3 (Mini-ribonuclease 3 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=mrnC PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 8.400e-15
Identity = 49/129 (37.98%), Postives = 78/129 (60.47%), Query Frame = 1 

		  

Query: 89  WLPSAPKVEKPR-STHNAASLAYIGDCIYELYARRHFLTPTLNIEVYNDRVMAVVRCEAQ 148
           W  S    + P   + +  +LAY+GD ++ELY R  +L P   I  ++ RV+A VR E Q
Sbjct: 10  WQSSLNPADAPAVQSLSPVALAYLGDAVFELYVRCCYLFPPRRIGDFHRRVVAQVRAEQQ 69

Query: 149 DALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAGVAVYNRASSLETLIGYLYLTD 208
             +L  L  +  L++ E++ +R G+N A+S   T++RA   +Y  AS LETL+GYLYL D
Sbjct: 70  AQILTTLLPQ--LTDPEKEWVRRGRNAATS---TSRRANPELYQAASGLETLLGYLYLRD 129

Query: 209 PMRLEDMMS 217
             RL+++++
Sbjct: 130 ARRLDELLA 133
[Close]
BLAST of Spo20447.1 vs. ExPASy Swiss-Prot
Match: MRNC_SYNP1 (Mini-ribonuclease 3 OS=Synechococcus sp. (strain PCC 6716) GN=mrnC PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.200e-14
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 1 

		  

Query: 106 ASLAYIGDCIYELYARRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEER 165
           ++LAY GD +YEL+ R  FLTP   I  Y+ +V+A VR E+Q   +  L      +  E 
Sbjct: 25  SALAYFGDAVYELFIRFIFLTPPQRINAYHHQVVAHVRAESQARYMDIL--WPHCTAAEL 84

Query: 166 DILRWGKNIASSKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKL 219
            I R G+N A+      KR    +Y +A+  E L+GYLYLTDP RL+D+++ L
Sbjct: 85  TIFRQGRNAAAD---GPKRVPAKIYRQATGFEALLGYLYLTDPQRLQDVLALL 132
[Close]
BLAST of Spo20447.1 vs. ExPASy Swiss-Prot
Match: MRNC_SYNP6 (Mini-ribonuclease 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=mrnC PE=3 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 3.500e-13
Identity = 50/134 (37.31%), Postives = 70/134 (52.24%), Query Frame = 1 

		  

Query: 85  GYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYARRHFLTPTLNIEVYNDRVMAVVRC 144
           G  R  P+A K   P++      LAY+GD +YE + R   L P       +  V+  VR 
Sbjct: 11  GDRRLSPAAAKQLAPQA------LAYLGDALYEFHVRLRLLLPAQRSHQVHQSVVGAVRA 70

Query: 145 EAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAGVAVYNRASSLETLIGYLY 204
           E Q  LL  L     L+ EE +I+R G+N A    R  +R     Y +A+ LETL+GYLY
Sbjct: 71  ERQAELLVSLL--PLLTAEELEIVRRGRNAAG---RVPRRLTGEYYQQATGLETLLGYLY 130

Query: 205 LTDPMRLEDMMSKL 219
           L DP RL+ ++ +L
Sbjct: 131 LCDPQRLQALLQQL 133
[Close]
BLAST of Spo20447.1 vs. ExPASy Swiss-Prot
Match: MRNC_BACSU (Mini-ribonuclease 3 OS=Bacillus subtilis (strain 168) GN=mrnC PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.400e-9
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 1 

		  

Query: 104 NAASLAYIGDCIYELYARRHFL----TPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDF 163
           N  +LAYIGD I+E+Y R H L    T   ++   + R+   V  ++Q  +L  L+N+ F
Sbjct: 14  NGLALAYIGDAIFEVYVRHHLLKQGFTKPNDLHKKSSRI---VSAKSQAEILFFLQNQSF 73

Query: 164 LSEEERDILRWGKNIASSKTRTTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKL 219
            +EEE  +L+ G+N  S    T K   V  Y  +++ E L+GYL+L    + E+ +S+L
Sbjct: 74  FTEEEEAVLKRGRNAKSG--TTPKNTDVQTYRYSTAFEALLGYLFLE---KKEERLSQL 124
[Close]
BLAST of Spo20447.1 vs. TAIR (Arabidopsis)
Match: AT1G55140.1 (Ribonuclease III family protein)

HSP 1 Score: 252.3 bits (643), Expect = 3.500e-67
Identity = 138/241 (57.26%), Postives = 175/241 (72.61%), Query Frame = 1 

		  

Query: 1   MAFASSRVVLVRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQI 60
           MA  S+   +VRA+ DTQ +L YNPN PR +K   NSN +S    S S S ++ +  L +
Sbjct: 1   MAILSASSTIVRAALDTQPKLRYNPNAPRNVKK--NSNLSSFVPPS-SPSSSSPATNLSV 60

Query: 61  DVDELLKFNPITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYA 120
            V +LLK  P +    +  +   +GYE+W PS PKVEKPRS  NAASLAYIGD IYE+YA
Sbjct: 61  SVSDLLK-RPASKDIGDGFDDTCVGYEKWFPSPPKVEKPRSVFNAASLAYIGDSIYEIYA 120

Query: 121 RRHFLTPTLNIEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTR 180
           RRHFL P L+IE YNDRV AVVRCEAQ ALLQKL ++DFL+++ERDILRWGKN+ S KTR
Sbjct: 121 RRHFLFPPLSIEEYNDRVRAVVRCEAQYALLQKLVDDDFLTKDERDILRWGKNVGSVKTR 180

Query: 181 TTKRAGVAVYNRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNL 240
           +T+RAGVAVYN+ASSLETLIGYLYL++  RLE+MM KLGF+ G S++ ++    +   + 
Sbjct: 181 STRRAGVAVYNKASSLETLIGYLYLSNGKRLEEMMQKLGFSSGSSTERMVKEAGSNKPSF 237

Query: 241 K 242
           K
Sbjct: 241 K 237
[Close]
BLAST of Spo20447.1 vs. TAIR (Arabidopsis)
Match: AT3G13740.1 (Ribonuclease III family protein)

HSP 1 Score: 242.7 bits (618), Expect = 2.800e-64
Identity = 137/241 (56.85%), Postives = 164/241 (68.05%), Query Frame = 1 

		  

Query: 11  VRASWDTQQRLPYNPNTPRKIKNKTNSNSNSLSSSSISTSQNNQSPRLQIDVDELLKFNP 70
           VRA+ DTQ RLPYNPN PRK+K   N NS       +       SP + I V +LLK  P
Sbjct: 10  VRAALDTQPRLPYNPNAPRKVKKIPNGNS------FLPPPSPAPSPGISISVADLLK-RP 69

Query: 71  ITPSQVNSEEPAYLGYERWLPSAPKVEKPRSTHNAASLAYIGDCIYELYARRHFLTPTLN 130
            +       +  Y+GYE W PS PK+EKPRS  N ASLA+IGD IYELYARRHFL P L+
Sbjct: 70  SSKEITVDVDDTYMGYETWSPSPPKLEKPRSVFNPASLAFIGDSIYELYARRHFLFPPLS 129

Query: 131 IEVYNDRVMAVVRCEAQDALLQKLRNEDFLSEEERDILRWGKNIASSKTRTTKRAGVAVY 190
           IE YNDRV AVVRCEAQ ALL KL ++DFL++EERDILRWGKN+ S++TRT +RAG AVY
Sbjct: 130 IEDYNDRVRAVVRCEAQYALLNKLVDDDFLTKEERDILRWGKNLGSARTRTRRRAGNAVY 189

Query: 191 NRASSLETLIGYLYLTDPMRLEDMMSKLGFAVGVSSQSIIGSVNAELHNLKQKKPKEKTR 250
           N+ASSLETLIGYLYLT+  RLE +M KLGF+   S++ +I   N         KP E + 
Sbjct: 190 NKASSLETLIGYLYLTNGKRLEKIMEKLGFSSDSSTEIVIEETN--------PKPSESSN 235

Query: 251 L 252
           L
Sbjct: 250 L 235
The following BLAST results are available for this feature:
BLAST of Spo20447.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902228043|gb|KNA20946.1|1.8e-14598.9hypothetical protein SOVF_0477... [more]
gi|731349627|ref|XP_010686090.1|1.9e-9174.4PREDICTED: uncharacterized pro... [more]
gi|731349625|ref|XP_010686089.1|2.3e-8971.5PREDICTED: uncharacterized pro... [more]
gi|976905317|gb|KVH92957.1|5.8e-7267.8Ribonuclease III domain-contai... [more]
gi|802577430|ref|XP_012068993.1|1.2e-6964.3PREDICTED: uncharacterized pro... [more]
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BLAST of Spo20447.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RN46_SPIOL1.2e-14598.9Uncharacterized protein OS=Spi... [more]
A0A0J8BVD1_BETVU1.3e-9174.4Uncharacterized protein OS=Bet... [more]
A0A0J8ER74_BETVU1.6e-8971.5Uncharacterized protein OS=Bet... [more]
A0A103XLG8_CYNCS4.0e-7267.8Ribonuclease III domain-contai... [more]
A0A067KXD0_JATCU8.4e-7064.3Uncharacterized protein OS=Jat... [more]
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BLAST of Spo20447.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MRNC_THEEB5.9e-1637.3Mini-ribonuclease 3 OS=Thermos... [more]
MRNC_SYNY38.4e-1537.9Mini-ribonuclease 3 OS=Synecho... [more]
MRNC_SYNP13.2e-1440.7Mini-ribonuclease 3 OS=Synecho... [more]
MRNC_SYNP63.5e-1337.3Mini-ribonuclease 3 OS=Synecho... [more]
MRNC_BACSU2.4e-934.4Mini-ribonuclease 3 OS=Bacillu... [more]
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BLAST of Spo20447.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G55140.13.5e-6757.2Ribonuclease III family protei... [more]
AT3G13740.12.8e-6456.8Ribonuclease III family protei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000999Ribonuclease III domainGENE3D1.10.1520.10coord: 97..222
score: 9.7
IPR000999Ribonuclease III domainPFAMPF00636Ribonuclease_3coord: 107..206
score: 1.2
IPR000999Ribonuclease III domainunknownSSF69065RNase III domain-likecoord: 101..217
score: 1.94
IPR008226Mini-ribonuclease 3 familyHAMAPMF_01468RNase_Mini_IIIcoord: 97..223
score: 19
NoneNo IPR availablePANTHERPTHR34276FAMILY NOT NAMEDcoord: 1..239
score: 6.7
NoneNo IPR availablePANTHERPTHR34276:SF1SUBFAMILY NOT NAMEDcoord: 1..239
score: 6.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0045900 negative regulation of translational elongation
biological_process GO:0030091 protein repair
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0009631 cold acclimation
biological_process GO:0042631 cellular response to water deprivation
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0034599 cellular response to oxidative stress
biological_process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006396 RNA processing
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
cellular_component GO:0005786 signal recognition particle, endoplasmic reticulum targeting
cellular_component GO:0016020 membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0009536 plastid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005829 cytosol
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
molecular_function GO:0004525 ribonuclease III activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008312 7S RNA binding
molecular_function GO:0005047 signal recognition particle binding
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0070191 methionine-R-sulfoxide reductase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0033743 peptide-methionine (R)-S-oxide reductase activity
RNA-Seq Expression