Spo20521 (gene) | SpinachBase

Overview


Name	Spo20521
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L24
Location	SpoScf_00305 : 469906 .. 479768 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCCTCCTTGTCCAATTGTCAGATTACCCAATCCTAATAACATTTTCTCTCTCCTCTCCCAAACCACCACCGCCTCCATCAAGGTCCTCACTCCTCAGCCACCACCTCTCCACCTCTCTTTCTCTTCTCTTGCAATCAACCACCACCTTCACAACGAACTGCTCCATCACCGCCTTCGCAACGACCACCTCCACTGCCGCCTCACGTTGACCCCATCGATTTTCGTAAGAGCCGCTTCCACCCTCACGACTGTCGACATATTCTATGGCATATCCTTCTAGTAATTTCTTCAATTTCTCTCTCCTGTTCTTCACATGAGAGTTCATCAATGACTACCAATTGATTTTTTCAATCAATTTCTGATAAAAATAGGAAGAATTGAATTAATTTGATAATGACAAATCTTTTTGTTCCAGCTGTAATCAGAATCTCTAAATCACCATCTATTTTATCGATCTATTCTCTTGCCAATTTTAATTTATTTGACTAACAATGCTCATCTAGCATTGTACATATATGTCATTTGTTTTTGTGATTACACTTGTAAACAATTACGTCGGATCGGAGCAATCACTCCATTCTTCAGTTATAATCCTTTCTCCCCTGTTAAATGAATCAAAATAGAAAACGATGATAATTGATTGGAATTGAATTGGAGAATGATAAACAAGCTACAAGCAGTGGGTTGGATTATCAACGGGCTGGGGTCCTCGCAGCGGGTTGAATCTTTTGCTCTCTGTATTGCTTATTTGCTCCATCCTCCACGGCCCATATGAATGTGAAATGCTTAATTTGAAATTCCTAGTTTTACCCAAACATAGTATTTGGAATTTAATTCCTGTATTTGAATTACAGATTTGAAATGAATCATTTCAAATGAAATGATTGTTTCCAAACACTACCTTAGTTATTTGTATTTCGTCTGTTTAATGCTGAGTTCTTTTTAATTTGTACCAGGGTTTCTGTTTGATTAAGGATGGGATGGAAGGCGGCTCAAAAACTTATTAGGAATTGGAAGATTCTGAGAGGGGATAATGTAAGTTCCCCCAAATTGAAAATTTTCTTAAACCCTTGCTTTCTTTTTTGTGAAATCTCATAATTATGTCGTTGATTGTTTTTCTTTTTTTGCTGGTGGGGTTTCATTTTTTATTGTTTTTGCATAGGTGATGATAATTAGGGGCAAAGATAAAGGTGAAACCGGCACTGTTAAGCGTGTGGTTCGATCTCAGAATCGTGTTATTGTTGAGGGAAAAAACCTTGTAAGATTCTTTCTTTCTCTAAGAAAATAATACATATGTTATGGTGGAAATGGATTTTTGTAAATGTTGCTTCTCAAGAGGATCTTAAAATGGTGCATGTAGTTCGTTTATACTTAATTAAATAATGTCATAAGTAATGTTGTTAATAACAATTAGTAGAGTGATTGAAATTCATTGGAGTATTAGTTATTGTTCATTCTAGAGAGTATGGTGTTTTAACTCTTAAGTCATTGGTTATTTTATATTGCTTTAAATATCGCCATCAAAACTAGTTTACATCTCAGCTGATCCATTTGGATGTGGTCATGCAGAGGTAGATGACATGATGTTGTGGTTTGAATTGTTTTTTTGAAACTTTTTTTTTTCCCGGTTCGGTGTGCTCCTCTTAGAGAAAACATGAAAGTTTTTTGATAAAAAACAGAGATGAGGTAGATGCTATTACATTTTTAATGGAGACAAAGAACCACATCACTTCAAAATCTCATGTTAAAGTCCAAGGGCTATCATTGGCCTATTATATTAGGACAACTCCATATTAAAAATTTATCCTACTCTTTAGGGATAGGTTAGAGTAACTGACATTTCATTCACTAATACGAAGATCACGATGTGAGTATTATTCTAATTTCTAAGTATATTGATCAATTGGAGTTATTGTTACTCTAAGATCACATTATGAGACTTGTGACTTATGAGCATCTTTTATTGAAGAACAACCTCTTGAGTTGGTTGATTTTTGGATAATCATTCAAATTACAGTACATTTCATTTCCCTTTTCGATTTTCAGGCCCCTATCACAAACATAAGCTTAATTAATTGAAAATATTGTACACTTAGAAAAAGTCAAAGGCGAAGAACCCCATTGGCTTTTCACTTTCAGAGAGAGAGAGAGAGATGAGCTCTGCTTGGGAGAGGATTCCATCTTTTCTGATGCAACGCTGCTGCATCCTACGAAGTATATCTTGTCTTATGGTAAGACTAAAAGACTGCAAGTAACTAATGGCCTAGCAATATCCCTACCCTCTTAGTTTCCTTGTGCCTTTCGTTATTCTGTGTCTTCCATAGTGATCACCTATCATTTCATCCGTTTCCTGACTCACCATATTCTTTCTTGAATATAACTCATTCAATTGCTCATTCTATTGAGCATTCCCTATCGGCATGCGAAGAGGCCATTCCATCAAGTGCCAATGTTCAAAATGCATCGAGAGTGTTGACTTGAGATGCCACCAGTGCAAGGAAAATGTGGAGACTGAAACTTCACTACAGGACTTAAGACTTTTGAGGTTCATCAAGCTGCCATATTTTCTTCCAGAACGTAGAAGTGACACATGAAGAGCCACCATTACTTAGTAATAGGGTTTCCGAACCCCAATTTTAGAACGATGCTACGCCTGAGTGATTAGTACACAACAGAATTTTCAAGACATCATCAGACTTCAAAACCATCATACGAGTAGCATTTTGCTTGTTTGAACAATTGCTATCCTTATTGATTCATTGTTCCAACATTGGCCTCTTTTCCCCCCCTCTTCAAACTGGAGTTACCTGTCTAAAAGACAATGCACGATTAGTACACTTTCGTCCAAATTTTTAGCTGTTATGTCACCAACCAGTCATATACTCATGTACGTCCATCTTTGAGTAATAATTGCTATGAAATTCGGATGGTTACCAAAAGTATCCTCCAGGAGCTCTTTGTTGGCATGATATTTAGCCTTCATCAACTTGGCTTATTAAAGTCTCAAGTAATAAGTTGATCTGGTTTTATGGGCATGGCTGAATTTAACTCCATATTACTTTTCTAACCATGTTCAACATTTAACTTACACAGTTTTTACCACGCGATTGAATGGTCTTCTAAAAAAAAATTCTCCAGTGAGCCAATATTCAGATTTTGTTAATTGACCAAACTGGTAAAAAAAAGTGATGGTTGGCAAAAATTTCGTAAATAGAAACTCTCCGGCGACAATTTGGTAAATTAATATAAATCCTGTGAGATTTGATCCATAAATTAGAACGGAATTTGTTATCCTTTGTTTTTTTTAAAGATTTTTTTGTTATTATATATACTCTTTTTGTCTTCTTCGAAAACCCATTTCTTATTTTGGAAAAACCCTATGATAAGTTTTATTTACTCTCTCCCTCTTTAATTTTCTTCCCCATGTAGTATTGTTCTTAGTTTTCATGAACTATATTCTTTAGTAGGAATTACAAAAATTCAAAGGATAAAAAGAATGATATTTATTAGATATAAAAAAAAATACCAAGAATGATTAATTTTTTCAGGGAATCGGATTGCGAACGACTAGAAAATGTGGTGAAGAAGCTAGAGTAGGGCAGAGAAAAAGAGAACCCAAAGTATTTATTGGACAAAAATAAAACAAAAATTAACATAGAAGTATTTTTTTTATAAAAGGATTTGAAGTATAAAACATGTAAAGATAAAGGGAAGAAAAAACCAAATAATATGTTTTTAGTATTTTTGTAAATTAGATGGGAGCAAATCAAGGAAAATAAAAGGTAAAGAAGGGGAAATGAAAAAGTAACTTTTAAGTGTCATCCACATGATAAAACAAACTCCGGGCAATTTTATGTCTCAAATGTCACCAGATTCATTTTAATGTACTAAATTGACACCGAAGAGCTTTTTTACCAAATTTTCACTAACAATCACTTCTTTTTTTACCAATTTAGTTAATTGGCCAAGAAAAAGTGTTCCTTGCGCATTCTAGATCTGTTGGGTTCATGTTGTAGTTGGTGTACAGGGTTCCAAACCTTATTTTGAGTTCTTTTCTCTTTTGATGAATTAGTTTATACCCTGTGTATGTAATTTAAAGTTCGTTTATATAGTCTATATAATAAAAATTTTCAAAAAATAAAATTTGATGCATTTGGAGTGTAGTGAAATTGAAAGAACATCTAATTAAGGAAGAGAAGTAGAAATGATGAATATAAATGATGGTTTTACAAAAAAAAAAAAATCAAAGAGATGACACATGACATCATGGTATGCAAAACATCCCGTTTTAAGTTTTAAAATATTAACATAATTTTTTTTTTAGAAAAATTCTCATTGGTTTCTTTCTAAATGTGACTTTTGTCAATGGTACACAATATCTAATTTGCTTCTCTCTGTTACCCTTATACTAGTGATTTAACAACTACACACTGCACCTAACAATTATTAAATGTTAGGCACTGTTTGATGAAGCTTCTATAAAAATAACTTCTAGAAAAAGTTTTTCAGGAACAGTTTCTAGGGTAACACTTTCGAGAAATAGAAATGTTTTACCACAAAAATTTAAAAGCACTTGTTTGATATTGTTTTCCTCATTTTTTGATAGTGAGAAATTCTTTTTGCAATATATTTTAGCTTTAGTAAATAAACCACCACGAATTGAAAAAAATTGAAAAGAAAGGAAAATTACTCTATCCACGTGCAATGCGATGAAGGAAGATGTCCAACATTCAGATGAACAACTAGACAAGTGTCAAATGACATAAAAATGTCAAGTTGCAAATAAACAAGCTCAATTGTTAATAATCATGATTTTTTGATGAATTCCAGTAAAGCAAAGTAAACACTTCCGTGCGTTCAAGGGAAAAATTACGGAGTAAATCAACATCTTTAAAAGAACAGGAAAAGGAGGCACTGCTCAAAAATCAAAATATTCCAATAAAAAATATATCAAGCAGCATACCCTTTATGATTAAGAAGGAATGAATCGGTCTATAAAATATCAAAGAATTTTAGTTCGACAAAATATTTTGAAATTACTAGTAATCTTTTTAAGTGGACGAGAAGGTGATGACGATGGTGGTGAATTTCATTGTTTCATTTTTCCGTCGAGAAATTGATGTCAATAGTTATGGTGGAAAATGTTCGGTAATGATGGAGGGTTTGAGAGGAGGATGATACTGGGTTTGATGAAAGGAGAGAGAAATAGGTGTAAAGAATGTTTTTAGATGGACATGGAGGGGCATTGTTGTAATGATTAGGGCATGATTGTCCAAAAGTCTGGGTTTGATGAAAGGAGAGAAAAATAGGTGTAAAGAGTGTTTTTAGATGGACATGGAGGGGCATTGTTGTAATGATTAGGGCATGGTTGTCCAACAAAAAGTTTCACTAAAGGGAGAAAATAGCTCCTCAAGAAACAATTTGTATTCATTCCAAGAAGCTATTTTGGGCTTCTAGAAAAATTGATTCTCCTCCTTGTAAACCCCGCGTTTGGCCAAGAAACTGTTTCTGAAGTTGAGAAACACTTCCAGAAGCTTGGTCAAACAGCATACTGACCTTGAGCATTCACTAATCTATCAATCTAATACTGTTTATTAATGTTATAGGCATTGTAGTTAGTAAGTCAATAGTATAAGGGTATAATCCAATTTGATTTTGTTTACCATTGAGAAAAGTCGGAAACAGAAGGGTACCAATGAGAATTTCCCAAAAACTTTTGTAGAACCTGCTTGACATATTTCACTGTTGACACAGTGAGTTTATATGGGTGTTCAGTGAGCCACTATTTGGACATCAAGTGTTTCCAAGGAAGGGCAGAAGAAGAAGAATATTCCTTCTGCCTTCTAGATCTGTTGGGTTAATGCTTTAGTTGGTTTACGCTGTTTACTAAATTTATTTTTGAGTTTTTTTCAACATAAGTATTTATTTTAACGTCTATAGAACCTGCTTGGTATATTTCTCTGTTTTGTTCCATGTAAGTTAGTGTTAGAATTCTTCATGCTGTAAAATAAATGAAACTTATGTTGTATTCATGTTGTAGTTGGTGTACAATGTTTCTTAATCTTATTAGTATTGGTTCTGAAGAGTTAAAAGTTCTAAAATATACATCCTTCGTTTCTAAATACATGCAACAATTTGACTTTTACACTATTCACATACTAAGTTTGAGTTCAAATTTTAACTACTACTCCCTCCGTTCCATAATGATGTTCCAATTTTCTTTTTCACGTTTTCCAATGCACGTTTTATATCATTTTTATCTCTAATTACACAATAATAAAAATTAAAAAAATTCATATTCTTAAGGACTCATTGAGATGAATCAAACAAGACCCACATGATTATGTTTTTTCTAATATATTGGATAAAATTTAGAAGATTGTCTTCAATTGTGAATAGAAACCTGAATTGGAACATCATTATGGAACGGAAGGAGTATATCGAATAAATGATATATTTAAACTGTGTTTAGATTAGCCTCAATAATAATTTTCAAATTATCAACTTTTTTTAACTTTTACTATTTCCCCAGTTCCTTAATATTGCACCATGTTTACTTTACGCTTCCCAATACATGACTTTGAATCTTAATCTTTTGAATTATGCATAAGTAAGAATTAAAAAAATTGATATTTAGAAAGTATAACTATATATTGATACAAATCTAATAAGATCCTACATGATTAAATATTTTCTTACGTATACATTACAAAAGATGGTCAAAGTCACAACGTGAATAGTGTAAAAGTCAAGATGGTGCGATATTCGTGGAACAGAGGAAGTATACACACTTAATAGTTGATGGTCAAAGTTAAGCATTGGCAAGCAACCGTTGCGTGTGTTTAGAAACGGAGGAAGTATGGAATTCATTTCAGTTAGCAGGTTTCATTTTGGTAGAATGTATTGATTTACTGATTCAGTTGCTGATTTGGTAGGATTTAAACTATTCCTGAATTTCTCAAATGCATTGCAGGATTGAACATACCAATTGTATGTGATGGAAATTGAAGTATACGTTGTAGGTTGCTGTTTTATTCAGGTTCCTTTGATAGTCTAGCCGGTATAGGCTACTGCTCATGGCTTCTGTTTTTGTAACTTACCAGGTCAAAAAACATATTAAACAAGGGCAAGGCCACGAAGGTGGCATTTTTACAGTTGAAGCGCCACTACATGTCTCAAATGTGCAAGTTGTTGATCCAGTTACTGGGTATTGTCAACTTCTCATTTGTCTCCACTAACTTACTAGTTATTCTGTATATAATAGATTCCAACGAAATGTTCGGGTCATGTTCTTGTCTGCAGAAAACCTTGCAAGGTAGGAATTCGATATCTAGAGGATGGCGGAAAGGTCAGAGTTGCGAGAGGTATAGGAGCATCAGGGGCCATTATCCCTCGCCCTGAAATTTTGAAGATAAGGACCACACCAAGGCCTGCTGCTCGTATGTATCTGATTCTTACTTTCTTCCATTTGATATTCACAGAATCTTTAAGTCATAGGAAGCATTTGACTTTTATGGTCAAATTTAATTAGCTTTGACACCACTAGACAAGCTGTAAATGTGCAAAGTTATTGTTTAAGTTCAGCAATGGTCGTCACACATTAAAATTCTATGTAACTCTTTATAAATAGTAGCCAAAATTAACCAACGTTGACCACAAAACTCAATTGTGGCCAATTATTATGAGATAGGTAGTAGAAGGGTTTTCATGTGAAGCTGGATTTTTCTTTGATTAATACGGGGATTGTTTAGAATGTATCATATAGTTTGGCCAAGTTAGCCTGTATTCTTTCTTCTTCTTTTTAAAAAAAAGTTTCAGGTCCATTAGGTTCAAATTCGGACTAATAAGTTTAATTTACACACAAACAAAATAAAAATAAAATATAAGGGCTAGTACGCTCTGATTGGGACTAGTGATTTCAGGTAGATTCACTTTGGAATTTTCAAGGGCTTCCAGGTGGAGAAAGCACTGCCTTAGAGCCAAGTCGTGGTCATATAGTTTTTAAAGATGATCTTGTTGGGGTTTATAGTAGCAAAAGATGATAGGAAATGTGGGAGATGAAGATTTTGTGAAAAGGGCCAGAAACAAATATATCGAGTCTTAAGTTTTAAGGCAAAGGACCAATCTCAACTTCGCCTGTAGTAGCATCAATATGGTATTTGTGTAGTGAATTCTTTGTTTATGAAACCTAATTCCAACAGAGAACTGATGAAGAATTCTGTGTATATGCTGTTCTCAGCACATTTGTTTGACCCTAGAAAATCTTTGCCGAAACATCTCTGTATTTATGAAAACTAGACATTTCCTTTTCCAAAATGTCTCACTTTTTTTTTTGACGGTATCCAAAATGTCTCCCTTTTGTTTTGCAATCTTCAAAACTCAAGTTTCAATTTGTCTTCTACAGTTCTACTATAACAGCCCTTTATCTCTTGTATCCTATATAGTAGGTTTGTTTTTATAACTCTTGCTATTTCAAAGACTGGAAAAATGAAAAATAAAAAATTTAAAGCAGATTTTTCAAAATTTTCTGATGAGCTGAGAAATGGTACACAAAAGCTCATCAGAAAAGTGTTCCCCTAGAAATTTCTGGAAAGGTTTCAAATATTATTGGAAGTTCTATAAAAGCCGCACATAACAGTACAACACTATTCCCATGCGTCCACAAATTACTATCAGTTTGAGTGATTTTGTCCAAACAATTGTTACCTACAGAACACACTACTCCCTTGTTAAAGAATACTTGATACATATCAAGTTAGCCAAGCTTGTCCAAAACTTCAAATGTAACTGTTACGAGGAATGCGATGCAAAACAATGTTGGCAACATTCTAATGCTGCCCTCACATCAACATGTGCTCGGGCTGATATTATTGAAAATAACTTCCTAAACTCTTAATATGGAGGGTTTGTTTATTTGCTTGCACGTTCTTATGATAGTCTTGAGAAGCATGAGAAAACCTTCTCCAAGGGAGTTCTTGATAAAGGGTCAGCCTCAAATATTAAAACTTGGATGTGTTTTTCCTTTTTGTCTCTGCGTTGGGTTTGTTGTTGTGCTTACTTGATTTAGTGTTTATCGAGTATTAGAGTCTACTCTACTAAAGGGTTGTATTTCATACTTTTCTGAAATGTCATAAAAAGTAATACTTGAGACAATTTAGCATTATCCTCGTGCTTGTGAACTAGTGATATCTAATTCTAGGGGAGCTCATTTCTTGTGCTTCTCTACTTGTTCTCTTATCCATTTCTTTCTTCTGCAGCTGGTCCTAAGGATACCGTGATGGAATTTGTGCTGGAAAAGACATACAATTCTAAGACCGGAGAGGGGATGCCGAACCTTTAAGGGGGCCAAATATCTTTTACTTATGCTACTATTAGATCAGCTAGGTGTATCTGATGGCCAAGGGATTGGCTCCATGGCATTATTTTCATAATGTTAATGCAGTAGTTTCTCTAGAATGTTTTGGGTTAATAATTCTTTTTTTTTAAATTTTTTTTATTGATAATTGGGTTAATAATTCTAAGGTATCTTGCTTACACTCAAAAATTCATGCGAGTGATTTGTTCTTTGGAAGAATGATCTCTTGTGTGTGTTTTGCTTAGTTCTCACAAAAATGTTAGTGTAGGCTTTATTCTGTTTTCTGTTACTCCTATATGGTATTGTCGGAGAAAGTGGTGAACTGAAACCTAAAGGAACCGGCTTATTGACCTCAGAATCATTACCATGTTTATCAGTATAATATACTTCCTCTGTTCATTTTTACTCGCAACGTTTGTCACTTTCATGCATGTCTATGCACAATTTTGATCACTAATATCTTTAATTCTTTTTAAGTAAAAATTATAAAAAGTTAATATTTTG

mRNA sequence

TCTCTCCTCCTTGTCCAATTGTCAGATTACCCAATCCTAATAACATTTTCTCTCTCCTCTCCCAAACCACCACCGCCTCCATCAAGGTCCTCACTCCTCAGCCACCACCTCTCCACCTCTCTTTCTCTTCTCTTGCAATCAACCACCACCTTCACAACGAACTGCTCCATCACCGCCTTCGCAACGACCACCTCCACTGCCGCCTCACGTTGACCCCATCGATTTTCGTAAGAGCCGCTTCCACCCTCACGACTGTCGACATATTCTATGGCATATCCTTCTAGTAATTTCTTCAATTTCTCTCTCCTGTTCTTCACATGAGAGTTCATCAATGACTACCAATTGATTTTTTCAATCAATTTCTGATAAAAATAGGAAGAATTGAATTAATTTGATAATGACAAATCTTTTTGTTCCAGCTGTAATCAGAATCTCTAAATCACCATCTATTTTATCGATCTATTCTCTTGCCAATTTTAATTTATTTGACTAACAATGCTCATCTAGCATTGTACATATATGTCATTTGTTTTTGTGATTACACTTGTAAACAATTACGTCGGATCGGAGCAATCACTCCATTCTTCAGTTATAATCCTTTCTCCCCTGTTAAATGAATCAAAATAGAAAACGATGATAATTGATTGGAATTGAATTGGAGAATGATAAACAAGCTACAAGCAGTGGGTTGGATTATCAACGGGCTGGGGTCCTCGCAGCGGGTTGAATCTTTTGCTCTCTGTATTGCTTATTTGCTCCATCCTCCACGGCCCATATGAATGTGAAATGCTTAATTTGAAATTCCTAGTTTTACCCAAACATAGTATTTGGAATTTAATTCCTGTATTTGAATTACAGATTTGAAATGAATCATTTCAAATGAAATGATTGTTTCCAAACACTACCTTAGTTATTTGTATTTCGTCTGTTTAATGCTGAGTTCTTTTTAATTTGTACCAGGGTTTCTGTTTGATTAAGGATGGGATGGAAGGCGGCTCAAAAACTTATTAGGAATTGGAAGATTCTGAGAGGGGATAATGTGATGATAATTAGGGGCAAAGATAAAGGTGAAACCGGCACTGTTAAGCGTGTGGTTCGATCTCAGAATCGTGTTATTGTTGAGGGAAAAAACCTTGTCAAAAAACATATTAAACAAGGGCAAGGCCACGAAGGTGGCATTTTTACAGTTGAAGCGCCACTACATGTCTCAAATGTGCAAGTTGTTGATCCAGTTACTGGAAAACCTTGCAAGGTAGGAATTCGATATCTAGAGGATGGCGGAAAGGTCAGAGTTGCGAGAGGTATAGGAGCATCAGGGGCCATTATCCCTCGCCCTGAAATTTTGAAGATAAGGACCACACCAAGGCCTGCTGCTCCTGGTCCTAAGGATACCGTGATGGAATTTGTGCTGGAAAAGACATACAATTCTAAGACCGGAGAGGGGATGCCGAACCTTTAAGGGGGCCAAATATCTTTTACTTATGCTACTATTAGATCAGCTAGGTGTATCTGATGGCCAAGGGATTGGCTCCATGGCATTATTTTCATAATGTTAATGCAGTAGTTTCTCTAGAATGTTTTGGGTTAATAATTCTTTTTTTTTAAATTTTTTTTATTGATAATTGGGTTAATAATTCTAAGGTATCTTGCTTACACTCAAAAATTCATGCGAGTGATTTGTTCTTTGGAAGAATGATCTCTTGTGTGTGTTTTGCTTAGTTCTCACAAAAATGTTAGTGTAGGCTTTATTCTGTTTTCTGTTACTCCTATATGGTATTGTCGGAGAAAGTGGTGAACTGAAACCTAAAGGAACCGGCTTATTGACCTCAGAATCATTACCATGTTTATCAGTATAATATACTTCCTCTGTTCATTTTTACTCGCAACGTTTGTCACTTTCATGCATGTCTATGCACAATTTTGATCACTAATATCTTTAATTCTTTTTAAGTAAAAATTATAAAAAGTTAATATTTTG

Coding sequence (CDS)

ATGGGATGGAAGGCGGCTCAAAAACTTATTAGGAATTGGAAGATTCTGAGAGGGGATAATGTGATGATAATTAGGGGCAAAGATAAAGGTGAAACCGGCACTGTTAAGCGTGTGGTTCGATCTCAGAATCGTGTTATTGTTGAGGGAAAAAACCTTGTCAAAAAACATATTAAACAAGGGCAAGGCCACGAAGGTGGCATTTTTACAGTTGAAGCGCCACTACATGTCTCAAATGTGCAAGTTGTTGATCCAGTTACTGGAAAACCTTGCAAGGTAGGAATTCGATATCTAGAGGATGGCGGAAAGGTCAGAGTTGCGAGAGGTATAGGAGCATCAGGGGCCATTATCCCTCGCCCTGAAATTTTGAAGATAAGGACCACACCAAGGCCTGCTGCTCCTGGTCCTAAGGATACCGTGATGGAATTTGTGCTGGAAAAGACATACAATTCTAAGACCGGAGAGGGGATGCCGAACCTTTAA

Protein sequence

MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPEILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20521.1	Spo20521.1	mRNA

Homology

[Close]

BLAST of Spo20521.1 vs. NCBI nr
Match: gi|731328900|ref|XP_010675307.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 297.7 bits (761), Expect = 1.200e-77
Identity = 141/159 (88.68%), Postives = 153/159 (96.23%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV++EGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLIEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. NCBI nr
Match: gi|731328898|ref|XP_010675305.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 295.0 bits (754), Expect = 7.600e-77
Identity = 141/159 (88.68%), Postives = 152/159 (95.60%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGAS +IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASRSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. NCBI nr
Match: gi|731362998|ref|XP_010693190.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 291.6 bits (745), Expect = 8.400e-76
Identity = 139/159 (87.42%), Postives = 152/159 (95.60%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGD+VMIIRGK+KGETGTVKRVVRSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDDVMIIRGKEKGETGTVKRVVRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGASG+II RPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASGSIISRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. NCBI nr
Match: gi|747089940|ref|XP_011092630.1| (PREDICTED: 50S ribosomal protein L24, chloroplastic [Sesamum indicum])

HSP 1 Score: 290.4 bits (742), Expect = 1.900e-75
Identity = 139/159 (87.42%), Postives = 152/159 (95.60%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLI +WK+LRGDNVMIIRGKD+GETGTVKRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKVLRGDNVMIIRGKDRGETGTVKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIF+VEAPLHVSNVQV+DPVTGKPCKVGI+YLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFSVEAPLHVSNVQVLDPVTGKPCKVGIKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIR+TPRP   GPKDT MEFVLEKTY++KTG GMP+L
Sbjct: 121 ILKIRSTPRPTTLGPKDTPMEFVLEKTYDAKTGMGMPDL 159

[Close]

BLAST of Spo20521.1 vs. NCBI nr
Match: gi|590717151|ref|XP_007050544.1| (KOW domain-containing protein [Theobroma cacao])

HSP 1 Score: 290.4 bits (742), Expect = 1.900e-75
Identity = 138/159 (86.79%), Postives = 150/159 (94.34%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WK+LRGDNVMIIRGKDKGETG +KRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
            GHEGGIFTVEAPLH SNVQVVDPVTGKPCKVG+RYLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP   GPKDT M+ VLEKTY+SKTG+GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLEKTYDSKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMN0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g085290 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 8.200e-78
Identity = 141/159 (88.68%), Postives = 153/159 (96.23%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV++EGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLIEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FBN8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g085270 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 5.300e-77
Identity = 141/159 (88.68%), Postives = 152/159 (95.60%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLIRNWKI+RGDNVMIIRGKDKGETGTVKRVVRSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIRNWKIVRGDNVMIIRGKDKGETGTVKRVVRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQ+VDPVTGKPCKVGIRY EDG KVR++RGIGAS +IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQIVDPVTGKPCKVGIRYQEDGTKVRISRGIGASRSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP APGPKDT ++ VLE+TYN KTG+GMP+L
Sbjct: 121 ILKIRTTPRPTAPGPKDTPLDLVLEETYNPKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A061DRL4_THECC (KOW domain-containing protein OS=Theobroma cacao GN=TCM_004312 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.300e-75
Identity = 138/159 (86.79%), Postives = 150/159 (94.34%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WK+LRGDNVMIIRGKDKGETG +KRV+RSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGIIKRVIRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
            GHEGGIFTVEAPLH SNVQVVDPVTGKPCKVG+RYLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  PGHEGGIFTVEAPLHASNVQVVDPVTGKPCKVGVRYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP   GPKDT M+ VLEKTY+SKTG+GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDLVLEKTYDSKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: A0A068V4X6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00042440001 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.200e-75
Identity = 140/159 (88.05%), Postives = 149/159 (93.71%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAAQKLI +WKILRGDNVMIIRGKDKGETG VKRV+RSQNRV+VEGKNLVKKHIKQG
Sbjct: 1   MGWKAAQKLIHHWKILRGDNVMIIRGKDKGETGLVKRVIRSQNRVLVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGSKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP   GPKDT M+ VLE+TY+ KTG GMP+L
Sbjct: 121 ILKIRTTPRPTVAGPKDTPMDVVLERTYDPKTGLGMPDL 159

[Close]

BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Match: I3T887_MEDTR (50S ribosomal L24-like protein OS=Medicago truncatula GN=MTR_1g047130 PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.200e-75
Identity = 138/159 (86.79%), Postives = 149/159 (93.71%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WK+LRGDNVMIIRGKDKGETG +KRVVRSQNRVIVEGKNLVKKHIKQG
Sbjct: 1   MGWKAAEKLIRHWKVLRGDNVMIIRGKDKGETGVIKRVVRSQNRVIVEGKNLVKKHIKQG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
           QGHEGGIFTVEAP+H SNVQV+DPVTGKPCKVG +YLEDG KVRV+RGIGASG+IIPRPE
Sbjct: 61  QGHEGGIFTVEAPIHASNVQVLDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIRTTPRP+  GPKDT ME VLEKTY+SKTG GMP L
Sbjct: 121 ILKIRTTPRPSVAGPKDTPMEIVLEKTYDSKTGRGMPEL 159

[Close]

BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICPR (50S ribosomal protein L24 OS=Rickettsia prowazekii (strain Madrid E) GN=rplX PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.800e-22
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1

		  
Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+II GK KG+ G V +V   +N V+V G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVVIITGKYKGKKGKVLKVFPEENTVVVSGVNLVKKHTKPNKMSEGGIITQESP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101

[Close]

BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICFE (50S ribosomal protein L24 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=rplX PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.400e-22
Identity = 50/97 (51.55%), Postives = 66/97 (68.04%), Query Frame = 1

		  
Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G NLVKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNLVKKHTKPNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101

[Close]

BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICTY (50S ribosomal protein L24 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=rplX PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.100e-22
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1

		  
Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V+++ GK KG+ G V +V   +N VIV G NLVKKH K  +  EGGI T E+P
Sbjct: 5   KVKKGDEVIVVTGKYKGKKGKVLKVFIDENTVIVSGVNLVKKHTKPNKMSEGGIITKESP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SNV  +DP TG P KV  ++LEDG KVR+A+  G
Sbjct: 65  IHISNVAHIDPKTGNPTKVAFKFLEDGSKVRIAKKSG 101

[Close]

BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICAE (50S ribosomal protein L24 OS=Rickettsia africae (strain ESF-5) GN=rplX PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.100e-22
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1

		  
Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101

[Close]

BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Match: RL24_RICCN (50S ribosomal protein L24 OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=rplX PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.100e-22
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1

		  
Query: 14  KILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQGQGHEGGIFTVEAP 73
           K+ +GD V++I GK KG+ G + +V    ++VIV G N+VKKH K  Q  EGGI T E P
Sbjct: 5   KVKKGDEVVVITGKHKGKKGKILKVFPEDSKVIVSGVNVVKKHTKSNQMSEGGIITKELP 64

Query: 74  LHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIG 111
           +H+SN+  +DP TG P KV  ++LEDG KVRVA+  G
Sbjct: 65  IHISNIAHIDPKTGNPTKVAFKFLEDGSKVRVAKKSG 101

[Close]

BLAST of Spo20521.1 vs. TAIR (Arabidopsis)
Match: AT5G23535.1 (KOW domain-containing protein)

HSP 1 Score: 279.3 bits (713), Expect = 1.500e-75
Identity = 132/159 (83.02%), Postives = 146/159 (91.82%), Query Frame = 1

		  
Query: 1   MGWKAAQKLIRNWKILRGDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIKQG 60
           MGWKAA+KLIR+WKILRGDNVMIIRGKDKGETGT+KRV+RSQNRVIVEGKNL+KKHIK G
Sbjct: 1   MGWKAAEKLIRHWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGG 60

Query: 61  QGHEGGIFTVEAPLHVSNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPE 120
             HEGGIFTVEAPLH SNVQVVDPVTG+PCKVG++YLEDG KVRVARG G SG+IIPRPE
Sbjct: 61  PDHEGGIFTVEAPLHASNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTGTSGSIIPRPE 120

Query: 121 ILKIRTTPRPAAPGPKDTVMEFVLEKTYNSKTGEGMPNL 160
           ILKIR TPRP   GPKDT MEFV E+TY++KTG+GMP+L
Sbjct: 121 ILKIRATPRPTTAGPKDTPMEFVWEQTYDAKTGKGMPDL 159

[Close]

BLAST of Spo20521.1 vs. TAIR (Arabidopsis)
Match: AT5G54600.1 (Translation protein SH3-like family protein)

HSP 1 Score: 67.8 bits (164), Expect = 7.000e-12
Identity = 38/107 (35.51%), Postives = 59/107 (55.14%), Query Frame = 1

		  
Query: 18  GDNVMIIRGKDKGETGTVKRVVRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPLHV 77
           GD V +I G+DKG+ G V ++    + ++++  NL  KH+K + +G  G I  +EAP+H 
Sbjct: 76  GDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREEGEPGQIVKIEAPIHS 135

Query: 78  SNVQVVDPVTGKPCKVGIRYLEDGGKVRVARGIGASGAIIPRPEILK 124
           SNV +         +VG + LEDG KVR     G     I + ++LK
Sbjct: 136 SNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKLLK 182

The following BLAST results are available for this feature:

BLAST of Spo20521.1 vs. NCBI nr
BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
BLAST of Spo20521.1 vs. TAIR (Arabidopsis)

BLAST of Spo20521.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|731328900\|ref\|XP_010675307.1\|	1.2e-77	88.6	PREDICTED: 50S ribosomal prote...	[more]
gi\|731328898\|ref\|XP_010675305.1\|	7.6e-77	88.6	PREDICTED: 50S ribosomal prote...	[more]
gi\|731362998\|ref\|XP_010693190.1\|	8.4e-76	87.4	PREDICTED: 50S ribosomal prote...	[more]
gi\|747089940\|ref\|XP_011092630.1\|	1.9e-75	87.4	PREDICTED: 50S ribosomal prote...	[more]
gi\|590717151\|ref\|XP_007050544.1\|	1.9e-75	86.7	KOW domain-containing protein ...	[more]

BLAST of Spo20521.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0J8CMN0_BETVU	8.2e-78	88.6	Uncharacterized protein OS=Bet...	[more]
A0A0J8FBN8_BETVU	5.3e-77	88.6	Uncharacterized protein OS=Bet...	[more]
A0A061DRL4_THECC	1.3e-75	86.7	KOW domain-containing protein ...	[more]
A0A068V4X6_COFCA	2.2e-75	88.0	Uncharacterized protein OS=Cof...	[more]
I3T887_MEDTR	2.2e-75	86.7	50S ribosomal L24-like protein...	[more]

BLAST of Spo20521.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
RL24_RICPR	1.8e-22	52.5	50S ribosomal protein L24 OS=R...	[more]
RL24_RICFE	2.4e-22	51.5	50S ribosomal protein L24 OS=R...	[more]
RL24_RICTY	3.1e-22	51.5	50S ribosomal protein L24 OS=R...	[more]
RL24_RICAE	4.1e-22	50.5	50S ribosomal protein L24 OS=R...	[more]
RL24_RICCN	4.1e-22	50.5	50S ribosomal protein L24 OS=R...	[more]

BLAST of Spo20521.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
AT5G23535.1	1.5e-75	83.0	KOW domain-containing protein	[more]
AT5G54600.1	7.0e-12	35.5	Translation protein SH3-like f...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 13..107 score: 18
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 51..113 score: 9.4
IPR003256	Ribosomal protein L24	TIGRFAMs	TIGR01079	TIGR01079	coord: 14..108 score: 4.5
IPR005824	KOW	PFAM	PF00467	KOW	coord: 17..48 score: 2.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 14..41 score: 1.
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 18..35 scor
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 10..108 score: 1.2
IPR014722	Ribosomal protein L2 domain 2	GENE3D	2.30.30.30		coord: 7..100 score: 1.5
None	No IPR available	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 1..157 score: 1.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0006526	arginine biosynthetic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0048481	plant ovule development
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0006412	translation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009555	pollen development
biological_process	GO:0008152	metabolic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006457	protein folding
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009845	seed germination
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0009723	response to ethylene
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0010325	raffinose family oligosaccharide biosynthetic process
biological_process	GO:0009939	positive regulation of gibberellic acid mediated signaling pathway
biological_process	GO:0048444	floral organ morphogenesis
biological_process	GO:0009657	plastid organization
biological_process	GO:0006591	ornithine metabolic process
biological_process	GO:0042538	hyperosmotic salinity response
biological_process	GO:0010304	PSII associated light-harvesting complex II catabolic process
biological_process	GO:0006771	riboflavin metabolic process
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0019497	hexachlorocyclohexane metabolic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0042793	plastid transcription
biological_process	GO:0010114	response to red light
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0009637	response to blue light
biological_process	GO:0010218	response to far red light
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009533	chloroplast stromal thylakoid
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009348	ornithine carbamoyltransferase complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019005	SCF ubiquitin ligase complex
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005634	nucleus
cellular_component	GO:0031977	thylakoid lumen
molecular_function	GO:0004585	ornithine carbamoyltransferase activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016597	amino acid binding
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003993	acid phosphatase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14678	0.77	Barchart \| Table
Spo23112	0.76	Barchart \| Table
Spo18171	0.76	Barchart \| Table
Spo19149	0.72	Barchart \| Table
Spo13029	0.71	Barchart \| Table
Spo21383	0.71	Barchart \| Table
Spo28058	0.70	Barchart \| Table
Spo26117	0.70	Barchart \| Table
Spo01129	0.70	Barchart \| Table
Spo11961	0.69	Barchart \| Table
Spo10285	0.69	Barchart \| Table
Spo26407	0.69	Barchart \| Table
Spo01579	0.69	Barchart \| Table
Spo02096	0.69	Barchart \| Table
Spo10404	0.69	Barchart \| Table
Spo20946	0.68	Barchart \| Table
Spo02573	0.68	Barchart \| Table
Spo12029	0.68	Barchart \| Table
Spo13451	0.68	Barchart \| Table
Spo20152	0.68	Barchart \| Table
Spo07476	0.67	Barchart \| Table
Spo01322	0.67	Barchart \| Table
Spo15036	0.67	Barchart \| Table
Spo06147	0.67	Barchart \| Table
Spo00225	0.67	Barchart \| Table
Spo24857	0.67	Barchart \| Table
Spo03123	0.66	Barchart \| Table
Spo18502	0.66	Barchart \| Table
Spo05204	0.66	Barchart \| Table
Spo05073	0.66	Barchart \| Table
Spo21761	0.66	Barchart \| Table
Spo04653	0.66	Barchart \| Table
Spo06614	0.66	Barchart \| Table
Spo26988	0.66	Barchart \| Table
Spo06505	0.66	Barchart \| Table
Spo09202	0.66	Barchart \| Table
Spo20142	0.65	Barchart \| Table
Spo00667	0.65	Barchart \| Table
Spo10493	0.65	Barchart \| Table
Spo25817	0.65	Barchart \| Table
Spo26006	0.65	Barchart \| Table
Spo10235	0.65	Barchart \| Table