Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGACCAAAAATTTCAATGTTTAATTCATTGTGCAACCTGATATTGGTTATCTTGGTAATCATAGTTTCCCCCACTACCGAAGCCACCTTCTCAAGTAGCATATCAAAACAACAAGTAAAATCAAATAATATCACCCATATCCAATTCTATTTCCATGACTATGTCCAAGGGCCAAACCCAACTGTTGCAAGGATTGCCCAAGCCAAGACGAGCGATACATCAGCAAGCACGTTTGGGGCGCTTGTTATGATTGACGATCCCTTAACCGAAGGACCGGAGAATAACTCGAGAATTGTTGGTCATGCTCAAGGAATGTATGGGTTCGCAGATCAACAACAATATGCATTACTTATGACGATGAATTTCTTGTTTTCAGAGGGAGCGTATAATGGGAGTACGTTAAGCGTTATGGGGAGGAATCCGGTGATGGAACAAGTTAGAGAATTGGCTATTGTTGGTGGAAGTGGAGTCTTTAGGTTTGCTACTGGATATGCTCAACTTAAGACTATTACTATGATGGATACAAATGGGGCTACTATTGTTGAGTATAATGTCTATGTTTCTCATTAA ATGGGACCAAAAATTTCAATGTTTAATTCATTGTGCAACCTGATATTGGTTATCTTGGTAATCATAGTTTCCCCCACTACCGAAGCCACCTTCTCAAGTAGCATATCAAAACAACAAGTAAAATCAAATAATATCACCCATATCCAATTCTATTTCCATGACTATGTCCAAGGGCCAAACCCAACTGTTGCAAGGATTGCCCAAGCCAAGACGAGCGATACATCAGCAAGCACGTTTGGGGCGCTTGTTATGATTGACGATCCCTTAACCGAAGGACCGGAGAATAACTCGAGAATTGTTGGTCATGCTCAAGGAATGTATGGGTTCGCAGATCAACAACAATATGCATTACTTATGACGATGAATTTCTTGTTTTCAGAGGGAGCGTATAATGGGAGTACGTTAAGCGTTATGGGGAGGAATCCGGTGATGGAACAAGTTAGAGAATTGGCTATTGTTGGTGGAAGTGGAGTCTTTAGGTTTGCTACTGGATATGCTCAACTTAAGACTATTACTATGATGGATACAAATGGGGCTACTATTGTTGAGTATAATGTCTATGTTTCTCATTAA ATGGGACCAAAAATTTCAATGTTTAATTCATTGTGCAACCTGATATTGGTTATCTTGGTAATCATAGTTTCCCCCACTACCGAAGCCACCTTCTCAAGTAGCATATCAAAACAACAAGTAAAATCAAATAATATCACCCATATCCAATTCTATTTCCATGACTATGTCCAAGGGCCAAACCCAACTGTTGCAAGGATTGCCCAAGCCAAGACGAGCGATACATCAGCAAGCACGTTTGGGGCGCTTGTTATGATTGACGATCCCTTAACCGAAGGACCGGAGAATAACTCGAGAATTGTTGGTCATGCTCAAGGAATGTATGGGTTCGCAGATCAACAACAATATGCATTACTTATGACGATGAATTTCTTGTTTTCAGAGGGAGCGTATAATGGGAGTACGTTAAGCGTTATGGGGAGGAATCCGGTGATGGAACAAGTTAGAGAATTGGCTATTGTTGGTGGAAGTGGAGTCTTTAGGTTTGCTACTGGATATGCTCAACTTAAGACTATTACTATGATGGATACAAATGGGGCTACTATTGTTGAGTATAATGTCTATGTTTCTCATTAA MGPKISMFNSLCNLILVILVIIVSPTTEATFSSSISKQQVKSNNITHIQFYFHDYVQGPNPTVARIAQAKTSDTSASTFGALVMIDDPLTEGPENNSRIVGHAQGMYGFADQQQYALLMTMNFLFSEGAYNGSTLSVMGRNPVMEQVRELAIVGGSGVFRFATGYAQLKTITMMDTNGATIVEYNVYVSH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20524.1 vs. NCBI nr
Match: gi|902191899|gb|KNA11944.1| (hypothetical protein SOVF_130510 [Spinacia oleracea]) HSP 1 Score: 372.9 bits (956), Expect = 3.400e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1
BLAST of Spo20524.1 vs. NCBI nr
Match: gi|731364204|ref|XP_010693846.1| (PREDICTED: dirigent protein 22-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 292.4 bits (747), Expect = 5.900e-76 Identity = 150/191 (78.53%), Postives = 170/191 (89.01%), Query Frame = 1
BLAST of Spo20524.1 vs. NCBI nr
Match: gi|731364202|ref|XP_010693845.1| (PREDICTED: dirigent protein 21-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 229.6 bits (584), Expect = 4.700e-57 Identity = 114/178 (64.04%), Postives = 144/178 (80.90%), Query Frame = 1
BLAST of Spo20524.1 vs. NCBI nr
Match: gi|870846209|gb|KMS98804.1| (hypothetical protein BVRB_3g068790 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 226.9 bits (577), Expect = 3.000e-56 Identity = 106/150 (70.67%), Postives = 129/150 (86.00%), Query Frame = 1
BLAST of Spo20524.1 vs. NCBI nr
Match: gi|902191898|gb|KNA11943.1| (hypothetical protein SOVF_130500 [Spinacia oleracea]) HSP 1 Score: 216.1 bits (549), Expect = 5.400e-53 Identity = 100/147 (68.03%), Postives = 122/147 (82.99%), Query Frame = 1
BLAST of Spo20524.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXD4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_130510 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 2.400e-100 Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1
BLAST of Spo20524.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E6H2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068800 PE=4 SV=1) HSP 1 Score: 292.4 bits (747), Expect = 4.100e-76 Identity = 150/191 (78.53%), Postives = 170/191 (89.01%), Query Frame = 1
BLAST of Spo20524.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBR2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068790 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 2.100e-56 Identity = 106/150 (70.67%), Postives = 129/150 (86.00%), Query Frame = 1
BLAST of Spo20524.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZ19_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_130500 PE=4 SV=1) HSP 1 Score: 216.1 bits (549), Expect = 3.700e-53 Identity = 100/147 (68.03%), Postives = 122/147 (82.99%), Query Frame = 1
BLAST of Spo20524.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BFL9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068820 PE=4 SV=1) HSP 1 Score: 202.2 bits (513), Expect = 5.600e-49 Identity = 99/186 (53.23%), Postives = 135/186 (72.58%), Query Frame = 1
BLAST of Spo20524.1 vs. ExPASy Swiss-Prot
Match: DIR21_ARATH (Dirigent protein 21 OS=Arabidopsis thaliana GN=DIR21 PE=3 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 2.200e-38 Identity = 79/187 (42.25%), Postives = 120/187 (64.17%), Query Frame = 1
BLAST of Spo20524.1 vs. ExPASy Swiss-Prot
Match: DIR11_ARATH (Dirigent protein 11 OS=Arabidopsis thaliana GN=DIR11 PE=2 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 3.700e-38 Identity = 74/173 (42.77%), Postives = 118/173 (68.21%), Query Frame = 1
BLAST of Spo20524.1 vs. ExPASy Swiss-Prot
Match: DIR2_ARATH (Dirigent protein 2 OS=Arabidopsis thaliana GN=DIR2 PE=2 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 4.100e-37 Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 1
BLAST of Spo20524.1 vs. ExPASy Swiss-Prot
Match: DIR1_ARATH (Dirigent protein 1 OS=Arabidopsis thaliana GN=DIR1 PE=2 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 3.900e-35 Identity = 77/183 (42.08%), Postives = 113/183 (61.75%), Query Frame = 1
BLAST of Spo20524.1 vs. ExPASy Swiss-Prot
Match: DIR23_ARATH (Dirigent protein 23 OS=Arabidopsis thaliana GN=DIR23 PE=2 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 1.100e-32 Identity = 68/177 (38.42%), Postives = 111/177 (62.71%), Query Frame = 1
BLAST of Spo20524.1 vs. TAIR (Arabidopsis)
Match: AT1G65870.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 160.2 bits (404), Expect = 1.200e-39 Identity = 79/187 (42.25%), Postives = 120/187 (64.17%), Query Frame = 1
BLAST of Spo20524.1 vs. TAIR (Arabidopsis)
Match: AT1G22900.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 159.5 bits (402), Expect = 2.100e-39 Identity = 74/173 (42.77%), Postives = 118/173 (68.21%), Query Frame = 1
BLAST of Spo20524.1 vs. TAIR (Arabidopsis)
Match: AT5G42500.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 156.0 bits (393), Expect = 2.300e-38 Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 1
BLAST of Spo20524.1 vs. TAIR (Arabidopsis)
Match: AT5G42510.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 149.4 bits (376), Expect = 2.200e-36 Identity = 77/183 (42.08%), Postives = 113/183 (61.75%), Query Frame = 1
BLAST of Spo20524.1 vs. TAIR (Arabidopsis)
Match: AT2G21100.1 (Disease resistance-responsive (dirigent-like protein) family protein) HSP 1 Score: 141.4 bits (355), Expect = 5.900e-34 Identity = 68/177 (38.42%), Postives = 111/177 (62.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20524.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20524.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20524.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo20524.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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