Spo20549 (gene)

Overview
NameSpo20549
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionBnaAnng22160D protein
LocationSpoScf_45744 : 108 .. 314 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCCGTGAACCATCTAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCATCGCGTCTCCCCCAACCCGCCCACAGCGGGGCGGAGGAGGAGGATGGCCTCCCATGCCTCACCGGGCGTGGATGGCCTAAATAAGGAGCCCCCGGTTACGAACTGCCGCGGCGATAGGTGGTAG

mRNA sequence

AATCCCGTGAACCATCTAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCATCGCGTCTCCCCCAACCCGCCCACAGCGGGGCGGAGGAGGAGGATGGCCTCCCATGCCTCACCGGGCGTGGATGGCCTAAATAAGGAGCCCCCGGTTACGAACTGCCGCGGCGATAGGTGGTAG

Coding sequence (CDS)

AATCCCGTGAACCATCTAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCATCGCGTCTCCCCCAACCCGCCCACAGCGGGGCGGAGGAGGAGGATGGCCTCCCATGCCTCACCGGGCGTGGATGGCCTAAATAAGGAGCCCCCGGTTACGAACTGCCGCGGCGATAGGTGGTAG

Protein sequence

NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEPPVTNCRGDRW
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20549.1Spo20549.1mRNA


Homology
[Close]
BLAST of Spo20549.1 vs. NCBI nr
Match: gi|902146143|gb|KNA05036.1| (hypothetical protein SOVF_194100 [Spinacia oleracea])

HSP 1 Score: 139.0 bits (349), Expect = 3.000e-30
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEPPV 60
          NPVNH VFERKLRPKPSGRGHACLGVTHRVSPNP TAGR RRMASH SPGVDGLNKEPPV
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHACLGVTHRVSPNPRTAGRSRRMASHPSPGVDGLNKEPPV 74

Query: 61 TNCRGDRW 69
          TNCR DRW
Sbjct: 75 TNCRSDRW 82
[Close]
BLAST of Spo20549.1 vs. NCBI nr
Match: gi|110740644|dbj|BAE98425.1| (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-9
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLN 56
          NPVNH VFERKLRPKPSGRGH CLGVT+R  P+P  A   R++ S   P   GLN
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSPSFADAGRKLVSRVLPHAVGLN 68
[Close]
BLAST of Spo20549.1 vs. NCBI nr
Match: gi|567862244|ref|XP_006423776.1| (hypothetical protein CICLE_v10029531mg [Citrus clementina])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8
Identity = 34/52 (65.38%), Postives = 35/52 (67.31%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPP-----TAGRRRRMASHA 48
          NPVNH VFERKLRPKP GRGH CLGVTHR    PP       G  RR+AS A
Sbjct: 31 NPVNHRVFERKLRPKPLGRGHVCLGVTHRCPTPPPQTKAGAPGCGRRLASRA 82
[Close]
BLAST of Spo20549.1 vs. NCBI nr
Match: gi|604301243|gb|EYU20954.1| (hypothetical protein MIMGU_mgv1a018198mg [Erythranthe guttata])

HSP 1 Score: 65.1 bits (157), Expect = 5.500e-8
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRR 41
          NPVNH VFERKLRPKP GRGH CLGVTH V+P PP + RR
Sbjct: 15 NPVNHRVFERKLRPKPLGRGHVCLGVTHCVAP-PPLSLRR 53
[Close]
BLAST of Spo20549.1 vs. NCBI nr
Match: gi|566211063|ref|XP_006372605.1| (hypothetical protein POPTR_0017s03170g [Populus trichocarpa])

HSP 1 Score: 65.1 bits (157), Expect = 5.500e-8
Identity = 32/58 (55.17%), Postives = 35/58 (60.34%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEP 59
          NPVNH VFERKLRP+P GRGH CLGVTHR   +P      R + S A P   G    P
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTHRRPHSPRLTRAGRILVSRALPLAAGPKSSP 72
[Close]
BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QER4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194100 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.100e-30
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEPPV 60
          NPVNH VFERKLRPKPSGRGHACLGVTHRVSPNP TAGR RRMASH SPGVDGLNKEPPV
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHACLGVTHRVSPNPRTAGRSRRMASHPSPGVDGLNKEPPV 74

Query: 61 TNCRGDRW 69
          TNCR DRW
Sbjct: 75 TNCRSDRW 82
[Close]
BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GIU0_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.800e-10
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNK 57
          NPVNH VFERKLRPKP GRGH CLG+THRV+P  P    R R  +  +P   G  K
Sbjct: 15 NPVNHRVFERKLRPKPLGRGHVCLGITHRVAPRTPQGAERGRKLASRAPRARGWPK 70
[Close]
BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: Q0WWS3_ARATH (Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.100e-10
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLN 56
          NPVNH VFERKLRPKPSGRGH CLGVT+R  P+P  A   R++ S   P   GLN
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSPSFADAGRKLVSRVLPHAVGLN 68
[Close]
BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: V4UD02_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029524mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-8
Identity = 34/52 (65.38%), Postives = 35/52 (67.31%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPP-----TAGRRRRMASHA 48
          NPVNH VFERKLRPKP GRGH CLGVTHR    PP       G  RR+AS A
Sbjct: 31 NPVNHRVFERKLRPKPLGRGHVCLGVTHRCPTPPPQTKAGAPGCGRRLASRA 82
[Close]
BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: M1D9E9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034963 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.900e-8
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 1 

		  

Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAG 39
          NPVNH VFERKLRPKP GRGH CLGVTHRV+P     G
Sbjct: 15 NPVNHRVFERKLRPKPLGRGHVCLGVTHRVAPRTLRGG 52
The following BLAST results are available for this feature:
BLAST of Spo20549.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902146143|gb|KNA05036.1|3.0e-3092.6hypothetical protein SOVF_1941... [more]
gi|110740644|dbj|BAE98425.1|1.3e-963.6hypothetical protein [Arabidop... [more]
gi|567862244|ref|XP_006423776.1|1.4e-865.3hypothetical protein CICLE_v10... [more]
gi|604301243|gb|EYU20954.1|5.5e-877.5hypothetical protein MIMGU_mgv... [more]
gi|566211063|ref|XP_006372605.1|5.5e-855.1hypothetical protein POPTR_001... [more]
back to top
BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QER4_SPIOL2.1e-3092.6Uncharacterized protein OS=Spi... [more]
A0A0V0GIU0_SOLCH1.8e-1058.9Putative ovule protein OS=Sola... [more]
Q0WWS3_ARATH9.1e-1063.6Putative uncharacterized prote... [more]
V4UD02_9ROSI1.0e-865.3Uncharacterized protein OS=Cit... [more]
M1D9E9_SOLTU2.9e-876.3Uncharacterized protein OS=Sol... [more]
back to top
BLAST of Spo20549.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo20549.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33220FAMILY NOT NAMEDcoord: 1..29
score: 2.8
NoneNo IPR availablePANTHERPTHR33220:SF1SUBFAMILY NOT NAMEDcoord: 1..29
score: 2.8

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0030001 metal ion transport
biological_process GO:0006310 DNA recombination
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0006457 protein folding
biological_process GO:0009651 response to salt stress
biological_process GO:0048825 cotyledon development
biological_process GO:0042742 defense response to bacterium
biological_process GO:0048571 long-day photoperiodism
biological_process GO:0006412 translation
biological_process GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process GO:0009744 response to sucrose
biological_process GO:0009611 response to wounding
biological_process GO:0016246 RNA interference
biological_process GO:0009863 salicylic acid mediated signaling pathway
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006281 DNA repair
biological_process GO:0042545 cell wall modification
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006606 protein import into nucleus
biological_process GO:0043090 amino acid import
biological_process GO:0015696 ammonium transport
biological_process GO:0015802 basic amino acid transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006869 lipid transport
biological_process GO:0010351 lithium ion transport
biological_process GO:0061025 membrane fusion
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0006862 nucleotide transport
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0043269 regulation of ion transport
biological_process GO:0010363 regulation of plant-type hypersensitive response
cellular_component GO:0005739 mitochondrion
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009536 plastid
cellular_component GO:0009506 plasmodesma
cellular_component GO:0000932 P-body
cellular_component GO:0005618 cell wall
cellular_component GO:0005737 cytoplasm
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005635 nuclear envelope
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
cellular_component GO:0005730 nucleolus
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005634 nucleus
molecular_function GO:0051287 NAD binding
molecular_function GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
molecular_function GO:0004427 inorganic diphosphatase activity
molecular_function GO:0009678 hydrogen-translocating pyrophosphatase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008536 Ran GTPase binding
molecular_function GO:0008565 protein transporter activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression