Spo20569 (gene) | SpinachBase

Overview


Name	Spo20569
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Cofactor assembly
Location	chr2 : 44663006 .. 44665242 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAGCTAACAAAAAAGCCCCTTTACCAAACACTTTTTTTTTTTTATTGTGAAAAAGCCAACAACTAAAACCCAGTGAGTAGTGAAAAAGCCACCAAAAAGCCATTTGCCAAACACCCAACGTACGAGACCACGATTCTTCTGGGAGGCAGATAGAGTAATTTGTTGACAATTATTTTTAGTGATAGAACACGAATGAAGGGTCTGAAACACAAATTGCAGTTGGGTGACGTCTTATCCATTCCAAAAAAAAGTGGCTCCTTGACTGTTTTCCTCCTTTGATCCTGTGAGAGTGAGACACTTCTGTTTTAAGCTTGCAGTATCTCATGGCAGCCCTTTCCCAGTCTTATCCCCTTTTGCTTGTAAGTACTTTTTTCTGTTTTACTCTTTATGATCACTAATCTCTCCATTCGATTAATGGTGTTTTTCCATTGTTGAGGCGTTTCGTCTTTGCGATATTGTTGTTGTTGCTGTATTAAAAACTGACGAATAACTGTATTCCTACTCTGAATCACAATAATCACAACATTAATACTATACTCCGTAGAATGGAGCATTGATATTGATAGTTTATCTGTAAGAGTAATCTAGTTGATATCTAGGTATAATTAGAGAAATTATGCAGTTTTCCAGGTCTGATTTCGAGATAAAACTCCCGAAAATCCCAATCCGTAATTACTTTTAGTCTTTTGGATCAAAGAAGTTCCGGAATGGTAATGGATTAATACTCTTGAGCAATTTGATTTAGTTAGGGTTGCAAACTTTTTGATGCTATCTTTCTTTCTATTATCCTATAAATCATTTGGAGAATCTCAATTACAGAATTGTGCGTTTGATGTTGCTGCTCATGTTCTTTTGATTCAGACTTGCAGTATTTTGTAAATTTTTGAGGGTTAGCCTGATTACATGTCCCACAGTCCCAGTGCCCAACAAATAGTCTAAAATATGAAACTAATTAACCTTTTGTGCTTCATACTTATCAACACATCGAAGATTGAGGCCGTCAGGAGCCCTTTTGCATAAGATACCAGTATACCACATTTTGTCAGCAAAGTCGGTTTCAGTTTGGATAATTTCGTGTTGAAACTAGCCAAGATGGATTTCATTACAAGTTCATTCCTTATAACTAATAAGATGTTGAAAATTCATCTGATAAAGGGAGTAGGATTTCTCTTCTTTTTCCTTTACTCCGTTATTTTATAAGGAAAGGGATTTCCCAAGCTGGGGAGGCAGACAATCGGCAGGTCAGGTGATAGGATTATCAGTAGTTTCATCTGTGTAACCATGTTTTGACAATTTATTGAATAATTCTTGCACTGTCATATGTTTAGCCAGTCCATCATCTTGTAGTCTGACATTCGTAAATTGTTCATGCTTCAACTGTCGTATGCAGAAAAGATGCAGGAATCCCGCGAAAAGAAACCAACGAATAACATGCAGTCCCCGGTGTGTCCTGGGGGTAACTGTTCAAACACTCACCCAAGTCTCTGGCTCGCTTCAACCATGTTATGATATGTTTTCTTTTTCTGCAAATCAAAACATCAGTATGCTCGAAACATCACATATTATCAGTGAGTTGAAACAGAATCTACTTATATTGGATCTGGATCCAGCCACGGCAAAGGTAGCCATTCCGTTTATAGGACCATTCCTTTCGGCGTTTTCCTTCCTTTTCATCGCAAGGATAGTCATGTCCTGGTACCCGAAGCTTCCGGTGGGTAAGTTTCCTTACGTTCTAGCTTACGCACCTACGGAGCCAATTCTTGCTCCTACGCGTAAAGTGATACCACCTCTAGGCGGAGTGGATGTAACACCTGTGGTTTGGTTTGGATTACTTAGTTTCTTGAATGAGATCTTGGTTGGACCTCAGGGACTTCTAGTCCTCCTTTCTCAACAGATGAGTAGTTAACATGGATGAGATAATAAATGGCCAATTAGGCTGCATCTGATTCTTGTAATATCATTTTTGGGGTTCCTAACTTAAACCGATATATGAATATACACATTTTGAAATCGCTATTTTCGGTTATTTGTATCAATGGAAATAAGCTATTGGTTAGGGTTGAAAGGAGTATTGTATTAGCTTATGACTTTTGTTACGAAAAAACGTCTCAAAATACTAGGTCACTTTCAATTTTCAATTAAATGCTACTACTGATCAAATTTTCACCTTAGATCAGATAAGAATATAAGATGTTACAAAAATATTATACGTACTACGAAGTATGAAAGACGTG

mRNA sequence

TTTCAGCTAACAAAAAAGCCCCTTTACCAAACACTTTTTTTTTTTTATTGTGAAAAAGCCAACAACTAAAACCCAGTGAGTAGTGAAAAAGCCACCAAAAAGCCATTTGCCAAACACCCAACGTACGAGACCACGATTCTTCTGGGAGGCAGATAGAGTAATTTGTTGACAATTATTTTTAGTGATAGAACACGAATGAAGGGTCTGAAACACAAATTGCAGTTGGGTGACGTCTTATCCATTCCAAAAAAAAGTGGCTCCTTGACTGTTTTCCTCCTTTGATCCTGTGAGAGTGAGACACTTCTGTTTTAAGCTTGCAGTATCTCATGGCAGCCCTTTCCCAGTCTTATCCCCTTTTGCTTAAAAGATGCAGGAATCCCGCGAAAAGAAACCAACGAATAACATGCAGTCCCCGGTGTGTCCTGGGGGTAACTGTTCAAACACTCACCCAAGTCTCTGGCTCGCTTCAACCATGTTATGATATGTTTTCTTTTTCTGCAAATCAAAACATCAGTATGCTCGAAACATCACATATTATCAGTGAGTTGAAACAGAATCTACTTATATTGGATCTGGATCCAGCCACGGCAAAGGTAGCCATTCCGTTTATAGGACCATTCCTTTCGGCGTTTTCCTTCCTTTTCATCGCAAGGATAGTCATGTCCTGGTACCCGAAGCTTCCGGTGGGTAAGTTTCCTTACGTTCTAGCTTACGCACCTACGGAGCCAATTCTTGCTCCTACGCGTAAAGTGATACCACCTCTAGGCGGAGTGGATGTAACACCTGTGGTTTGGTTTGGATTACTTAGTTTCTTGAATGAGATCTTGGTTGGACCTCAGGGACTTCTAGTCCTCCTTTCTCAACAGATGAGTAGTTAACATGGATGAGATAATAAATGGCCAATTAGGCTGCATCTGATTCTTGTAATATCATTTTTGGGGTTCCTAACTTAAACCGATATATGAATATACACATTTTGAAATCGCTATTTTCGGTTATTTGTATCAATGGAAATAAGCTATTGGTTAGGGTTGAAAGGAGTATTGTATTAGCTTATGACTTTTGTTACGAAAAAACGTCTCAAAATACTAGGTCACTTTCAATTTTCAATTAAATGCTACTACTGATCAAATTTTCACCTTAGATCAGATAAGAATATAAGATGTTACAAAAATATTATACGTACTACGAAGTATGAAAGACGTG

Coding sequence (CDS)

ATGGCAGCCCTTTCCCAGTCTTATCCCCTTTTGCTTAAAAGATGCAGGAATCCCGCGAAAAGAAACCAACGAATAACATGCAGTCCCCGGTGTGTCCTGGGGGTAACTGTTCAAACACTCACCCAAGTCTCTGGCTCGCTTCAACCATGTTATGATATGTTTTCTTTTTCTGCAAATCAAAACATCAGTATGCTCGAAACATCACATATTATCAGTGAGTTGAAACAGAATCTACTTATATTGGATCTGGATCCAGCCACGGCAAAGGTAGCCATTCCGTTTATAGGACCATTCCTTTCGGCGTTTTCCTTCCTTTTCATCGCAAGGATAGTCATGTCCTGGTACCCGAAGCTTCCGGTGGGTAAGTTTCCTTACGTTCTAGCTTACGCACCTACGGAGCCAATTCTTGCTCCTACGCGTAAAGTGATACCACCTCTAGGCGGAGTGGATGTAACACCTGTGGTTTGGTTTGGATTACTTAGTTTCTTGAATGAGATCTTGGTTGGACCTCAGGGACTTCTAGTCCTCCTTTCTCAACAGATGAGTAGTTAA

Protein sequence

MAALSQSYPLLLKRCRNPAKRNQRITCSPRCVLGVTVQTLTQVSGSLQPCYDMFSFSANQNISMLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20569.1	Spo20569.1	mRNA

Homology

[Close]

BLAST of Spo20569.1 vs. NCBI nr
Match: gi|731354696|ref|XP_010688737.1| (PREDICTED: uncharacterized protein LOC104902606 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 236.9 bits (603), Expect = 2.800e-59
Identity = 131/186 (70.43%), Postives = 148/186 (79.57%), Query Frame = 1


		  
Query: 1   MAALSQSYPLLLKRCRNPAKRN-----QRITCSPRCVLGVTVQTLTQVSGSLQPCYDMFS 60
           MA L + YPL +KRC +P +RN     + I CSP+CVLGVTVQT T+   SL      F 
Sbjct: 1   MATLCKPYPLSIKRCWSPVRRNIARGPRMIQCSPQCVLGVTVQTGTE---SLHHGLTNFQ 60

Query: 61  FSANQNISMLETS-HIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSW 120
            S+    S++ETS HI  EL ++++++DLD ATAKVAI FIGPFLS FSFLFI RIVMSW
Sbjct: 61  PSS----SVIETSAHIFKELNESIVLMDLDSATAKVAIAFIGPFLSGFSFLFIVRIVMSW 120

Query: 121 YPKLPVGKFPYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLL 180
           YPKLPVGKFPYV+AYAPTEPIL PTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLL
Sbjct: 121 YPKLPVGKFPYVVAYAPTEPILVPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLL 179

[Close]

BLAST of Spo20569.1 vs. NCBI nr
Match: gi|902214248|gb|KNA17454.1| (hypothetical protein SOVF_079850 [Spinacia oleracea])

HSP 1 Score: 233.4 bits (594), Expect = 3.100e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


		  
Query: 64  MLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKF 123
           MLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKF
Sbjct: 1   MLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKF 60

Query: 124 PYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS 183
           PYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS
Sbjct: 61  PYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS 120

[Close]

BLAST of Spo20569.1 vs. NCBI nr
Match: gi|1021028523|gb|KZM86308.1| (hypothetical protein DCAR_023442 [Daucus carota subsp. sativus])

HSP 1 Score: 206.1 bits (523), Expect = 5.300e-50
Identity = 115/176 (65.34%), Postives = 131/176 (74.43%), Query Frame = 1


		  
Query: 11  LLKRCRNPAKRNQRITCSPRCVLGVTVQTLTQ-----VSGSLQPCYDMFSFSANQNISML 70
           + KR  N   RN   TC   C LGVTV   TQ     VS S +P Y          ++ +
Sbjct: 54  IAKRNHNQGSRN---TCRACCFLGVTVPPSTQLSLIDVSTSAKPFY----------VNEI 113

Query: 71  ETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKFPY 130
             S  +SEL ++L++ DLDPATAK+ I F+GPFLSAF+FLFI RIVMSWYPKLPVGKFPY
Sbjct: 114 SQSDTVSELMRSLVLADLDPATAKLTITFLGPFLSAFAFLFIVRIVMSWYPKLPVGKFPY 173

Query: 131 VLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQM 182
           VLAYAPTEPIL+ TRKVIPPLGGVDVTPVVWFGL+SFLNEILVGPQGLLVLLSQQ+
Sbjct: 174 VLAYAPTEPILSLTRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQQV 216

[Close]

BLAST of Spo20569.1 vs. NCBI nr
Match: gi|255582382|ref|XP_002531980.1| (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Ricinus communis])

HSP 1 Score: 198.0 bits (502), Expect = 1.500e-47
Identity = 108/178 (60.67%), Postives = 134/178 (75.28%), Query Frame = 1


		  
Query: 5   SQSYPLLLKRCRNPAKRNQRITCSPRCVLGVTVQTLTQVSGSLQPCYDMFSFSANQNISM 64
           S+ +  L++R  NP+     +  S RC    T    T  + S +P  + F    N N+++
Sbjct: 29  SEQFNCLIRR--NPSDDYHVLQSSIRCSAVNTELLPTYATISERPL-NSFEDVQNINLNV 88

Query: 65  LETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKFP 124
           ++TS   S+  Q+ ++ DLDPATAK+AI F+GPFLSAF FLFI RIVMSWYPKLPVGKFP
Sbjct: 89  VKTSEATSKFIQSSVVADLDPATAKLAIGFLGPFLSAFGFLFILRIVMSWYPKLPVGKFP 148

Query: 125 YVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMS 183
           YV+AYAPTEPIL PTRKVIPP+GGVDVTPVVWFGL+SFLNEIL+GPQGLLVLLSQQ++
Sbjct: 149 YVIAYAPTEPILVPTRKVIPPVGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVN 203

[Close]

BLAST of Spo20569.1 vs. NCBI nr
Match: gi|1000941643|ref|XP_015582584.1| (PREDICTED: protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Ricinus communis])

HSP 1 Score: 197.6 bits (501), Expect = 1.900e-47
Identity = 106/167 (63.47%), Postives = 128/167 (76.65%), Query Frame = 1


		  
Query: 16  RNPAKRNQRITCSPRCVLGVTVQTLTQVSGSLQPCYDMFSFSANQNISMLETSHIISELK 75
           RNP+     +  S RC    T    T  + S +P  + F    N N+++++TS   S+  
Sbjct: 36  RNPSDDYHVLQSSIRCSAVNTELLPTYATISERPL-NSFEDVQNINLNVVKTSEATSKFI 95

Query: 76  QNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVLAYAPTEPI 135
           Q+ ++ DLDPATAK+AI F+GPFLSAF FLFI RIVMSWYPKLPVGKFPYV+AYAPTEPI
Sbjct: 96  QSSVVADLDPATAKLAIGFLGPFLSAFGFLFILRIVMSWYPKLPVGKFPYVIAYAPTEPI 155

Query: 136 LAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMS 183
           L PTRKVIPP+GGVDVTPVVWFGL+SFLNEIL+GPQGLLVLLSQQ++
Sbjct: 156 LVPTRKVIPPVGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVN 201

[Close]

BLAST of Spo20569.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRY2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g203300 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.000e-59
Identity = 131/186 (70.43%), Postives = 148/186 (79.57%), Query Frame = 1


		  
Query: 1   MAALSQSYPLLLKRCRNPAKRN-----QRITCSPRCVLGVTVQTLTQVSGSLQPCYDMFS 60
           MA L + YPL +KRC +P +RN     + I CSP+CVLGVTVQT T+   SL      F 
Sbjct: 1   MATLCKPYPLSIKRCWSPVRRNIARGPRMIQCSPQCVLGVTVQTGTE---SLHHGLTNFQ 60

Query: 61  FSANQNISMLETS-HIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSW 120
            S+    S++ETS HI  EL ++++++DLD ATAKVAI FIGPFLS FSFLFI RIVMSW
Sbjct: 61  PSS----SVIETSAHIFKELNESIVLMDLDSATAKVAIAFIGPFLSGFSFLFIVRIVMSW 120

Query: 121 YPKLPVGKFPYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLL 180
           YPKLPVGKFPYV+AYAPTEPIL PTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLL
Sbjct: 121 YPKLPVGKFPYVVAYAPTEPILVPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLL 179

[Close]

BLAST of Spo20569.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RER1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079850 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.200e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1


		  
Query: 64  MLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKF 123
           MLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKF
Sbjct: 1   MLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKF 60

Query: 124 PYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS 183
           PYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS
Sbjct: 61  PYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS 120

[Close]

BLAST of Spo20569.1 vs. UniProtKB/TrEMBL
Match: A0A164SLU7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023442 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.700e-50
Identity = 115/176 (65.34%), Postives = 131/176 (74.43%), Query Frame = 1


		  
Query: 11  LLKRCRNPAKRNQRITCSPRCVLGVTVQTLTQ-----VSGSLQPCYDMFSFSANQNISML 70
           + KR  N   RN   TC   C LGVTV   TQ     VS S +P Y          ++ +
Sbjct: 54  IAKRNHNQGSRN---TCRACCFLGVTVPPSTQLSLIDVSTSAKPFY----------VNEI 113

Query: 71  ETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKFPY 130
             S  +SEL ++L++ DLDPATAK+ I F+GPFLSAF+FLFI RIVMSWYPKLPVGKFPY
Sbjct: 114 SQSDTVSELMRSLVLADLDPATAKLTITFLGPFLSAFAFLFIVRIVMSWYPKLPVGKFPY 173

Query: 131 VLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQM 182
           VLAYAPTEPIL+ TRKVIPPLGGVDVTPVVWFGL+SFLNEILVGPQGLLVLLSQQ+
Sbjct: 174 VLAYAPTEPILSLTRKVIPPLGGVDVTPVVWFGLVSFLNEILVGPQGLLVLLSQQV 216

[Close]

BLAST of Spo20569.1 vs. UniProtKB/TrEMBL
Match: B9T162_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0190480 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.000e-47
Identity = 108/178 (60.67%), Postives = 134/178 (75.28%), Query Frame = 1


		  
Query: 5   SQSYPLLLKRCRNPAKRNQRITCSPRCVLGVTVQTLTQVSGSLQPCYDMFSFSANQNISM 64
           S+ +  L++R  NP+     +  S RC    T    T  + S +P  + F    N N+++
Sbjct: 29  SEQFNCLIRR--NPSDDYHVLQSSIRCSAVNTELLPTYATISERPL-NSFEDVQNINLNV 88

Query: 65  LETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKFP 124
           ++TS   S+  Q+ ++ DLDPATAK+AI F+GPFLSAF FLFI RIVMSWYPKLPVGKFP
Sbjct: 89  VKTSEATSKFIQSSVVADLDPATAKLAIGFLGPFLSAFGFLFILRIVMSWYPKLPVGKFP 148

Query: 125 YVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMS 183
           YV+AYAPTEPIL PTRKVIPP+GGVDVTPVVWFGL+SFLNEIL+GPQGLLVLLSQQ++
Sbjct: 149 YVIAYAPTEPILVPTRKVIPPVGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVN 203

[Close]

BLAST of Spo20569.1 vs. UniProtKB/TrEMBL
Match: M5XNQ8_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa022325mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.300e-46
Identity = 93/118 (78.81%), Postives = 107/118 (90.68%), Query Frame = 1


		  
Query: 66  ETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGKFPY 125
           +TSH +S L   L++ DLDPATAK+AI F+GPF S FSFLFI RIVMSWYPK+PVGKFPY
Sbjct: 10  DTSHTLSNLMHKLVLADLDPATAKLAIGFLGPFFSLFSFLFIIRIVMSWYPKIPVGKFPY 69

Query: 126 VLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQMSS 184
           V+AYAPTEP+L PTRK+IPPLGGVDVTPVVWFGL+SFLNEILVGPQGLLVLLSQQ+++
Sbjct: 70  VVAYAPTEPLLVPTRKLIPPLGGVDVTPVVWFGLISFLNEILVGPQGLLVLLSQQVNT 127

[Close]

BLAST of Spo20569.1 vs. ExPASy Swiss-Prot
Match: CCB3_ARATH (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana GN=CCB3 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.100e-42
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = 1


		  
Query: 63  SMLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGK 122
           +++  ++ ISE  +N+ + DLDP TAK+AI  +GP LSAF FLFI RIVMSWYPKLPV K
Sbjct: 54  NLIRQTNSISESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDK 113

Query: 123 FPYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQ 181
           FPYVLAYAPTEPIL  TRKVIPPL GVDVTPVVWFGL+SFL+EILVGPQGLLVL+SQQ
Sbjct: 114 FPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLLVLVSQQ 171

[Close]

BLAST of Spo20569.1 vs. TAIR (Arabidopsis)
Match: AT5G36120.1 (cofactor assembly, complex C (B6F))

HSP 1 Score: 174.5 bits (441), Expect = 6.100e-44
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = 1


		  
Query: 63  SMLETSHIISELKQNLLILDLDPATAKVAIPFIGPFLSAFSFLFIARIVMSWYPKLPVGK 122
           +++  ++ ISE  +N+ + DLDP TAK+AI  +GP LSAF FLFI RIVMSWYPKLPV K
Sbjct: 54  NLIRQTNSISESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSWYPKLPVDK 113

Query: 123 FPYVLAYAPTEPILAPTRKVIPPLGGVDVTPVVWFGLLSFLNEILVGPQGLLVLLSQQ 181
           FPYVLAYAPTEPIL  TRKVIPPL GVDVTPVVWFGL+SFL+EILVGPQGLLVL+SQQ
Sbjct: 114 FPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLLVLVSQQ 171

The following BLAST results are available for this feature:

BLAST of Spo20569.1 vs. NCBI nr
BLAST of Spo20569.1 vs. UniProtKB/TrEMBL
BLAST of Spo20569.1 vs. ExPASy Swiss-Prot
BLAST of Spo20569.1 vs. TAIR (Arabidopsis)

BLAST of Spo20569.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731354696\|ref\|XP_010688737.1\|	2.8e-59	70.4	PREDICTED: uncharacterized pro...	[more]
gi\|902214248\|gb\|KNA17454.1\|	3.1e-58	100.	hypothetical protein SOVF_0798...	[more]
gi\|1021028523\|gb\|KZM86308.1\|	5.3e-50	65.3	hypothetical protein DCAR_0234...	[more]
gi\|255582382\|ref\|XP_002531980.1\|	1.5e-47	60.6	PREDICTED: protein COFACTOR AS...	[more]
gi\|1000941643\|ref\|XP_015582584.1\|	1.9e-47	63.4	PREDICTED: protein COFACTOR AS...	[more]

BLAST of Spo20569.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8BRY2_BETVU	2.0e-59	70.4	Uncharacterized protein OS=Bet...	[more]
A0A0K9RER1_SPIOL	2.2e-58	100.	Uncharacterized protein OS=Spi...	[more]
A0A164SLU7_DAUCA	3.7e-50	65.3	Uncharacterized protein OS=Dau...	[more]
B9T162_RICCO	1.0e-47	60.6	Putative uncharacterized prote...	[more]
M5XNQ8_PRUPE	3.3e-46	78.8	Uncharacterized protein (Fragm...	[more]

BLAST of Spo20569.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
CCB3_ARATH	1.1e-42	74.5	Protein COFACTOR ASSEMBLY OF C...	[more]

BLAST of Spo20569.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G36120.1	6.1e-44	74.5	cofactor assembly, complex C (...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 98..167 score: 3.3
None	No IPR available	PANTHER	PTHR33219	FAMILY NOT NAMED	coord: 58..183 score: 2.6
None	No IPR available	PANTHER	PTHR33219:SF1	COFACTOR ASSEMBLY, COMPLEX C (B6F)	coord: 58..183 score: 2.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016020	membrane

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo30034	0.67	Barchart \| Table
Spo26958	0.65	Barchart \| Table