Spo20605 (gene)

Overview
NameSpo20605
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 44537752 .. 44540272 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTAGAAGAATTTGAGGTAGTACCGTAGTAGTCATACTTGTCAGTCACCGGCTCAACTCACTAGTGAGTAGTGACGAGCTCACTGCCACCTGCGTACCCGAATCCCGATAAACATCTATCCAGAAAATGGGAAGTTGAACACAACGAAACCAGCCACCCAAATATTTTGTCACCAATTCACCATTTACAACAACATAGTTGGAGAGTGAAAGAGCAGATCTAGAGAATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGGTTATTTCTATCAATGCCTTACTTCTAACATTTTGATAAATTTGTTTAAGAATTACGGCTTCTTATAATTATCTATTTTTTGTGATCTTTGTGAAATTTTATGGAAATGGTGGTCTGGGTTATGTGGATTATAGTGTGTTCTTATCAATTTTGAATTGGGGTATGTTAATGAGCCATTTATTTCTCTTATAATGGACTAGAATTATACTATTTGTTTTCTATTTTATCTGCACTCTGCAATTATGGGTTGGATATTGCCCTTCAGTTTTGGGGGAAGATTTACTTTTATACATAGAAATTGCAGGTTTGTTTGATTCTGAATTATGATTTTTTTTTTTTCATTTGTGCAACTAGATTTCACAATCGCCTTCTGTTGTTGTTTAGCCATAAGCTTGAAATCAGCAAATTAGCCATTAACTTGCTATTGATAAACTAGTCATACGACGTCTACAATAAAAATCAAAACTAACAAATACAAAATCATTTGGATCAAACAAAATTCTAATCCGGCAAAACCACTATCGTTGTAGAGATCTGACAATGATGAATACCCTCTTTCACATGGCTGTTTGATACATCCATCAACGAGGGGGTATTTCAATCTGTTGTAGCTTTGGTATTGAATTAAATTCGATTCAATTGATTGTAGACGTAAGAATGACATCCATTGTAACCCCGCACAAATCTTCATCAATAAATCAAAAGCTCTCCAATAAGGAGGGAATGGAGTTTTTATTCCGAACATGAAATCAAAAGCTAGGAAAAGCAAGAAAAAAGGGGCTTACCATCAACCTAATGGTTGGTGGTAGCCCCTAAAAAATTAGGGTTTTGAAAGAAAAAGAGAGAAAAGGGAGAGATGGTTGAACATTATTTTAAATTTGTTGTTGACTTTTGGCTGTCAAATTGCAAATGTCTTTCATGTATTAAAATATGAAAGATTTTATTTCCTTATTTGCAATATGGCATTAAATAATTAGTTTTTGGGAAATTCTACATGGTGACTTTGTACTATAGTATTTTCTACTTGGCGGAAATAAAATAATTTGACTTTCTAGAGTGGGCTTGTAGTTTTAAAAATATCATTAGAGTGCACTAATTACGTGTTTAAGAGCTAACCCATGGATATATGACTAATTTTATAACCAGTTAAACAAAAATTACTAACCTACCCATGAGTTAATCAATTCCCTCAAAAACCTAAATAAGCTCGCCTGCTTTTCACTTGCATTTGCTCCTCAAATACTTCGTATAAATGTATACCCAGAAAGATAAAACATATCACTATTATTAACAACCCTACACCTCATTACCATTATCAGAACTAGCATCACCAAAAATGGACTACGAAAATAGTGGAAGAATGAAAAGGAAATAAAAGTAGTCTGGTTGGGTTCTGAATTCTGTTTTCTGAAGAACTAATGGTTCTGAATCCACACTTGGGCTGCTCGTGGGAGAAATGGAATAAATAATAAGACCAACAGAATCAGAGTTCTACTAATATGGGTCTATTAATTGAGAATAGTTTCCAGTTTATGCCAATGGAGCACTAGTCATTAAGTTTCTTAAAAAAAAGCATGTCATACAATGACGATACCACCTTAATCTCCACGGTTATGCATGGTGCTCCTTTAGAAGCGCCTATAACAAGACCAAACAGAATGATTAAGAAGGAAATTTAAACAAGCAATGATCAGTTCCTTTTTCTTAAATAAAACATTGTACGACACATTGTTTTCTACTTTGCTCTATACAAGTAAGCACAAAGCAAACAAGTAGCAACTTAATAAATACTACAGTGAAAAATCATGCAGTTTAACAATATAACAAAATATTGGAATACATTCGTATTAGAGGTCGTTGGACAACTTTTGGGCTCGCTTACATTAAGGAAACTCAGGTCTGTGTAAATAACAGAAGGAAATTGATATACTTGGACAACTTTTCCTAGCGTTACTAACCTTGGGGGAATACTGAATGATCTGACATTAGCATCACTGCATCACAGAATACTGAATTGTTTTTATGTTTTCTGTCCCCTTATTTAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

mRNA sequence

TTTTAGAAGAATTTGAGGTAGTACCGTAGTAGTCATACTTGTCAGTCACCGGCTCAACTCACTAGTGAGTAGTGACGAGCTCACTGCCACCTGCGTACCCGAATCCCGATAAACATCTATCCAGAAAATGGGAAGTTGAACACAACGAAACCAGCCACCCAAATATTTTGTCACCAATTCACCATTTACAACAACATAGTTGGAGAGTGAAAGAGCAGATCTAGAGAATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

Coding sequence (CDS)

ATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

Protein sequence

METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASDHCRSAKHAFCMAVGIILYNIPCYCGIL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20605.1Spo20605.1mRNA


Homology
[Close]
BLAST of Spo20605.1 vs. NCBI nr
Match: gi|902203624|gb|KNA14630.1| (hypothetical protein SOVF_105580 [Spinacia oleracea])

HSP 1 Score: 105.1 bits (261), Expect = 5.800e-20
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

		  

Query: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASD 56
          METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSA++
Sbjct: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSATE 55
[Close]
BLAST of Spo20605.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R555_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105580 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.000e-20
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1 

		  

Query: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASD 56
          METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSA++
Sbjct: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSATE 55
The following BLAST results are available for this feature:
BLAST of Spo20605.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902203624|gb|KNA14630.1|5.8e-2096.3hypothetical protein SOVF_1055... [more]
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BLAST of Spo20605.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R555_SPIOL4.0e-2096.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo20605.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20605.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0032981 mitochondrial respiratory chain complex I assembly
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0090501 RNA phosphodiester bond hydrolysis
biological_process GO:0048229 gametophyte development
biological_process GO:0048856 anatomical structure development
biological_process GO:0008380 RNA splicing
biological_process GO:0006139 nucleobase-containing compound metabolic process
biological_process GO:0009308 amine metabolic process
biological_process GO:0001510 RNA methylation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0031972 chloroplast intermembrane space
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005507 copper ion binding
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0048038 quinone binding
molecular_function GO:0005524 ATP binding
RNA-Seq Expression