Spo20638 (gene) | SpinachBase

Overview


Name	Spo20638
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Histone H3
Location	chr3 : 51667674 .. 51671462 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAAGAGGAAAGAGAAGAAGGGAGATGAAGGACCTACAGTAATTTCATTTGGCGCTCTTCAGGATGGCGCAAATTGGACAAATAAATCCGGCCCAATTCTCATCAGTTGTCGCAATTTGTGAAAATACATCCCGCCCAAAATCCAGTTTTTCATTTGTGTTTTCCCTCCCCTTTTTTAGTGGGATTGATGAGTTGTCAACATATTATAGGTGGTGTACAAGATGCTCTTGTACACTAGGTGTATATGTAGCATTTTCCTGACGTTTATGTTAAAATTCTGAAGTGGCTAAATGACGCTTATTGTTTCAGGCGTCTTGTGTAAATGAACTCAAATGATTCTTATTGGAATCCATTAATTTGGTATTGACATATTCTGTGTGAGTACTAAAATTTGTTGTGTTTTGGCCATTGGGGTGACTTGTAGGTTTGCCCAATTGGTTACATATCACTTGACGTTCAATGAACACTGTGCTTTTTTTTTTTCTTTTTCTTTTTGTAGTTTTGCACACCCTATTCACCGATTTTAGCTTCGACTACATTCGGATCCGCCCCGGGTCGCACACCTTGTTTATGGTGGGTGAGTCTCCCAGTAAGAGTTTCTGCATACGGCGAGGCTTGAACCCGATACCTCCCTTAAGCGGCATCAAGCTGCTTACCACTTGAGCCAACTATATGTTGGTATTGTGCTTTTACATCATTGCTAGTGTTGGTACTTGGTAGCACATTACACGGGATTGGGCATGGCCTGATTTGATTGTGTAATTTTCTCAATTTGCGAAACACTACCCTATTGAATGCACAGTTAAATTCCAAACTTATACAGTCTATGTTATTAAATATACAGTCAACAAGTCGGGTAGAAGTTTTCGGTATTGTTCTATCACGCTAAAGTGTTGGTCGACCAAAAACCTTAGGGGCATGTTTGGTTGCAAGTAAATAAAGGAGGAGGTGTGAGTTCATATGAAGTGCAATATGTTAAGTTGTTTGGTTGGCATGAATTGAGATTTGGGTATAATGGAGGAATTGTTAAAATTTCATGGAACATGGGAAATGACTTACCTACCATCGACTTGGTGAGTCAATTCTCATATCAATTCCCAATACGACAAAATGCCAAAGTTCAACCAAACGAGCCATACCAATGGAAAAAAATGTTCCAAAAAAACCATGTGTGCAGTATTTTGGACTTCAAATTTTATGAACTGAACTAAACTTGACTTATTGAGTCTGGATTTAACTTATAAAACGTGAACTAAACTAAAATGAACTAAACTTATAAAAAATTTCAAAGAACAAGGCCGAATTCTCGTTCTATGGATTCGCAATTTTTTTTTTGCCTAACTTAAAACTTAATGATAATAGTTAACTGGCCAATTGAAATTCCAAGTTTTGAATTTGTTAGACAATTTTATTTCGGAGTACCATGATTAGCAAAACAATCGATGGAATAGTAAGTATGTCTCTTATGAGATCATCATATGTGTAAAATCGACATCGCGATGTGTGCATTTAAAAACATAACTATTTAACTGGAAAGTACAACTATTTGATTAACAATTGTATCTATTTAATTAGAGAGTATATAAATAATACTCTGTGTAATTATTTGATAAGAAATTGGTCTTATATATAAAATCGTCTTTACGTACCGAGTAGGAAAGTTTTACTAGAAATATGGGCAATTTAGGCATACCATACAAGGGTATAACCGTCACTTCCAAGGACAATCAATATTGTGCACCCAACAAAAACAAAAAAAAAGTTGAAAAAACCCTAAAACGTGTTAGTTAGAATTCGTCAACCAACAAGTAAACCCCATCAATCCGTAACAAAACCAAGCATTACATCTTAGCCGTTCACTGTAATAGAGAAAACACAACCAACGTTATTTTACACCGTTAGATCTCCAACAGTAAAAGCACACGGATCGTCATTATCAGCCGTCGATTCCCTCATCATTTGTTAACCCGCCCACCCATCTTATATAAACCACTTCACCTCCTTCAATTACAAATTTCTGCTAATCGTCTTCAAATTCTACAGAGAGAAAAAGAGAGGAGAGAGAAAGAGAGAACCGACTTTTCGAAAAAGCGTAAGGAGTTTTGTCGAGGTAACCTTCTTCTTCTTCCGATCTCTTCAATTTCCTTTTTGATTTTTTTGACGCTTTGTATTCTTTGATTTTAAGGTTAGCTTTCCGTAGTTTATGAATCTGTTTGTTTGATGATTCCGTTAATGTTTGAAATTTATTGCTCTTTTGTTGAATGAATTTGTGGCGGACATCGAAATTAAGGTTTTCATTGATTCTTGTTGTTAATTTTACTAGGTTAAATTACCTTATTCATAATTTCTACAGCGCTTTTCTATTTATTGTATTATTTGACTTTTATTAGGTTAGCTTTCGTAGTTTTTGAATCTGATTGTTTCATGATTTCGTCTATGTTGGAAATTTATTGCTGTTTGTTGAGTGAATTTGTCGCCGACGTCAAAATTAGGGTTTTAATTGATTTTATAGAATGCAGTTGAAAATATCTTAAACAATTTCGTCTGTGGTTTAGCTGGATCTTTGAAAATTGTTAACTTCCCCTAAACGTTTTCCTGATTAATTCGGGAAGTGATTTTTTGAATTTTCCCCCAAAATTGATGTGGATTTAATCCAAATTAGTAATTTAGTATTTATCTTGAAGTTGTTTAGGGTTTTAGTTTGATATTATATCTAATCGTGGATTTATGTTTCTTATAGATGGCCCGTACCAAGCAAACTGCTCGTAAAAGTACGGGAGGAAAGGCTCCCAGGAAGCAACTTGCCACCAAGGTATTAATCTTATCCTCGCATTGTTCTTTTGATTGTGAATTGTTCTTGAACATTGCTATCTGTATTTCGAAGCTTGTATTGTTCTTGAATGTTGCTATCTGTATTTTGAAGCTTGTATAATTCTTGAATGTTGGTGTTTGTATAGTTCTTGAATCTTGGCGCTTTTGTATTGTTCTTATAGGCTGCTCGTAAGTCTGCCCCAACTACCGGAGGAGTGAAGAAGCCTCACCGTTACCGTCCCGGAACCGTTGCACTCCGTGAAATCAGGAAGTACCAGAAGAGCACAGAGCTGTTGATCAGGAAGCTGCCATTCCAGAGGCTTGTCCGTGAAATTGCACAAGACTTCAAGACTGATCTCCGTTTCCAGAGCCACGCTGTTTTGGCCCTTCAGGAGGCTGCTGAGGCTTACCTTGTTGGTCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTTACCATCATGCCTAAGGACATCCAGCTTGCTCGCAGGATCAGGGGTGAACGTGCTTAATCGGGTTAAGCTCCTCCTCGGTTGGTTTGTTTGTTTTTGCTATAATAGTATTAGTTGATGTTATTGTTTAGGCTTAATGCAGGACTTAAATAGGGTTTGTTATTGTTGGGGATGATGGGGTTTGATGATGAATGCTGTATTCGTAGTGAAAAGTAATGATGGTGGTGTTTTGAGAGCAAAGGAACTCAAGTTTCTGGTATATTTGGTGCAAGTATTTTGATTTCTGTTATGTGGTCTCACACTGATTGTGTGTGGAAACACTCATCTAATGTAGTTCATATATATGAGACTTAATTCGTTTATGTTCATTCTTGATTGAGTTCCTTGGCTACATTAATTGATCTAATTTCAGCTCCTCGGTTGTTTGTTTTTTTGTTTTTGCTATAATTGTATTAGTTTGATGTTATTGTTAGGGTTAATTGCAGGACTTGAAATAGATGTTGTTATTGTT

mRNA sequence

ATGGCAGAAAGAGGAAAGAGAAGAAGGGAGATGAAGGACCTACAAGAGAAAAAGAGAGGAGAGAGAAAGAGAGAACCGACTTTTCGAAAAAGCGTAAGGAGTTTTGTCGAGATGGCCCGTACCAAGCAAACTGCTCGTAAAAGTACGGGAGGAAAGGCTCCCAGGAAGCAACTTGCCACCAAGGCTGCTCGTAAGTCTGCCCCAACTACCGGAGGAGTGAAGAAGCCTCACCGTTACCGTCCCGGAACCGTTGCACTCCGTGAAATCAGGAAGTACCAGAAGAGCACAGAGCTGTTGATCAGGAAGCTGCCATTCCAGAGGCTTGTCCGTGAAATTGCACAAGACTTCAAGACTGATCTCCGTTTCCAGAGCCACGCTGTTTTGGCCCTTCAGGAGGCTGCTGAGGCTTACCTTGTTGGTCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTTACCATCATGCCTAAGGACATCCAGCTTGCTCGCAGGATCAGGGGTGAACGTGCTTAATCGGGTTAAGCTCCTCCTCGGTTGGTTTGTTTGTTTTTGCTATAATAGTATTAGTTGATGTTATTGTTTAGGCTTAATGCAGGACTTAAATAGGGTTTGTTATTGTTGGGGATGATGGGGTTTGATGATGAATGCTGTATTCGTAGTGAAAAGTAATGATGGTGGTGTTTTGAGAGCAAAGGAACTCAAGTTTCTGGTATATTTGGTGCAAGTATTTTGATTTCTGTTATGTGGTCTCACACTGATTGTGTGTGGAAACACTCATCTAATGTAGTTCATATATATGAGACTTAATTCGTTTATGTTCATTCTTGATTGAGTTCCTTGGCTACATTAATTGATCTAATTTCAGCTCCTCGGTTGTTTGTTTTTTTGTTTTTGCTATAATTGTATTAGTTTGATGTTATTGTTAGGGTTAATTGCAGGACTTGAAATAGATGTTGTTATTGTT

Coding sequence (CDS)

ATGGCAGAAAGAGGAAAGAGAAGAAGGGAGATGAAGGACCTACAAGAGAAAAAGAGAGGAGAGAGAAAGAGAGAACCGACTTTTCGAAAAAGCGTAAGGAGTTTTGTCGAGATGGCCCGTACCAAGCAAACTGCTCGTAAAAGTACGGGAGGAAAGGCTCCCAGGAAGCAACTTGCCACCAAGGCTGCTCGTAAGTCTGCCCCAACTACCGGAGGAGTGAAGAAGCCTCACCGTTACCGTCCCGGAACCGTTGCACTCCGTGAAATCAGGAAGTACCAGAAGAGCACAGAGCTGTTGATCAGGAAGCTGCCATTCCAGAGGCTTGTCCGTGAAATTGCACAAGACTTCAAGACTGATCTCCGTTTCCAGAGCCACGCTGTTTTGGCCCTTCAGGAGGCTGCTGAGGCTTACCTTGTTGGTCTGTTCGAGGACACCAACCTGTGCGCCATCCACGCCAAGCGTGTTACCATCATGCCTAAGGACATCCAGCTTGCTCGCAGGATCAGGGGTGAACGTGCTTAA

Protein sequence

MAERGKRRREMKDLQEKKRGERKREPTFRKSVRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20638.1	Spo20638.1	mRNA

Homology

[Close]

BLAST of Spo20638.1 vs. NCBI nr
Match: gi|571542288|ref|XP_003552025.2| (PREDICTED: histone H3.3 [Glycine max])

HSP 1 Score: 263.1 bits (671), Expect = 3.500e-67
Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 1

		  
Query: 28  FRKSVRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 87
           FRK    + EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR
Sbjct: 41  FRKQRPKYFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 100

Query: 88  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 147
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 101 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 160

Query: 148 CAIHAKRVTIMPKDIQLARRIRGERA 174
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 161 CAIHAKRVTIMPKDIQLARRIRGERA 186

[Close]

BLAST of Spo20638.1 vs. NCBI nr
Match: gi|734400320|gb|KHN31394.1| (Histone H3.3 [Glycine soja])

HSP 1 Score: 263.1 bits (671), Expect = 3.500e-67
Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 1

		  
Query: 28  FRKSVRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 87
           FRK    + EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR
Sbjct: 41  FRKQRPKYFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 100

Query: 88  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 147
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 101 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 160

Query: 148 CAIHAKRVTIMPKDIQLARRIRGERA 174
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 161 CAIHAKRVTIMPKDIQLARRIRGERA 186

[Close]

BLAST of Spo20638.1 vs. NCBI nr
Match: gi|763749932|gb|KJB17320.1| (hypothetical protein B456_003G041300 [Gossypium raimondii])

HSP 1 Score: 261.9 bits (668), Expect = 7.800e-67
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 1

		  
Query: 32  VRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK 91
           +  F EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK
Sbjct: 12  IHIFAEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK 71

Query: 92  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH 151
           YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH
Sbjct: 72  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH 131

Query: 152 AKRVTIMPKDIQLARRIRGERA 174
           AKRVTIMPKDIQLARRIRGERA
Sbjct: 132 AKRVTIMPKDIQLARRIRGERA 153

[Close]

BLAST of Spo20638.1 vs. NCBI nr
Match: gi|937921062|dbj|BAS95979.1| (Os06g0130900, partial [Oryza sativa Japonica Group])

HSP 1 Score: 260.4 bits (664), Expect = 2.300e-66
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1

		  
Query: 33  RSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKY 92
           RS  EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKY
Sbjct: 29  RSEEEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKY 88

Query: 93  QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA 152
           QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA
Sbjct: 89  QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA 148

Query: 153 KRVTIMPKDIQLARRIRGERA 174
           KRVTIMPKDIQLARRIRGERA
Sbjct: 149 KRVTIMPKDIQLARRIRGERA 169

[Close]

BLAST of Spo20638.1 vs. NCBI nr
Match: gi|944265898|gb|KQL30138.1| (hypothetical protein SETIT_018284mg [Setaria italica])

HSP 1 Score: 258.8 bits (660), Expect = 6.600e-66
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1

		  
Query: 37  EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 96
           EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST
Sbjct: 88  EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKST 147

Query: 97  ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 156
           ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT
Sbjct: 148 ELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT 207

Query: 157 IMPKDIQLARRIRGERA 174
           IMPKDIQLARRIRGERA
Sbjct: 208 IMPKDIQLARRIRGERA 224

[Close]

BLAST of Spo20638.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RGD5_GLYSO (Histone H3.3 OS=Glycine soja GN=glysoja_023048 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.400e-67
Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 1

		  
Query: 28  FRKSVRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 87
           FRK    + EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR
Sbjct: 41  FRKQRPKYFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 100

Query: 88  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 147
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 101 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 160

Query: 148 CAIHAKRVTIMPKDIQLARRIRGERA 174
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 161 CAIHAKRVTIMPKDIQLARRIRGERA 186

[Close]

BLAST of Spo20638.1 vs. UniProtKB/TrEMBL
Match: K7MPE3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G015200 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.400e-67
Identity = 140/146 (95.89%), Postives = 141/146 (96.58%), Query Frame = 1

		  
Query: 28  FRKSVRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 87
           FRK    + EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR
Sbjct: 41  FRKQRPKYFEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 100

Query: 88  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 147
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 101 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 160

Query: 148 CAIHAKRVTIMPKDIQLARRIRGERA 174
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 161 CAIHAKRVTIMPKDIQLARRIRGERA 186

[Close]

BLAST of Spo20638.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RDR1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G041300 PE=3 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.400e-67
Identity = 138/142 (97.18%), Postives = 139/142 (97.89%), Query Frame = 1

		  
Query: 32  VRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK 91
           +  F EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK
Sbjct: 12  IHIFAEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRK 71

Query: 92  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH 151
           YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH
Sbjct: 72  YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIH 131

Query: 152 AKRVTIMPKDIQLARRIRGERA 174
           AKRVTIMPKDIQLARRIRGERA
Sbjct: 132 AKRVTIMPKDIQLARRIRGERA 153

[Close]

BLAST of Spo20638.1 vs. UniProtKB/TrEMBL
Match: A0A0P0WRT9_ORYSJ (Os06g0130900 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os06g0130900 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.600e-66
Identity = 139/141 (98.58%), Postives = 139/141 (98.58%), Query Frame = 1

		  
Query: 33  RSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKY 92
           RS  EMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKY
Sbjct: 29  RSEEEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKY 88

Query: 93  QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA 152
           QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA
Sbjct: 89  QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHA 148

Query: 153 KRVTIMPKDIQLARRIRGERA 174
           KRVTIMPKDIQLARRIRGERA
Sbjct: 149 KRVTIMPKDIQLARRIRGERA 169

[Close]

BLAST of Spo20638.1 vs. UniProtKB/TrEMBL
Match: V7CZU0_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G253800g PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.600e-66
Identity = 138/146 (94.52%), Postives = 141/146 (96.58%), Query Frame = 1

		  
Query: 28  FRKSVRSFVEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 87
           F  S+ +  +MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR
Sbjct: 57  FLMSLLALEQMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALR 116

Query: 88  EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 147
           EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL
Sbjct: 117 EIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNL 176

Query: 148 CAIHAKRVTIMPKDIQLARRIRGERA 174
           CAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 177 CAIHAKRVTIMPKDIQLARRIRGERA 202

[Close]

BLAST of Spo20638.1 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.600e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.600e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 256.9 bits (655), Expect = 1.600e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 256.9 bits (655), Expect = 1.600e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 256.9 bits (655), Expect = 1.600e-67
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. TAIR (Arabidopsis)
Match: AT4G40030.2 (Histone superfamily protein)

HSP 1 Score: 258.5 bits (659), Expect = 3.000e-69
Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 1

		  
Query: 36  VEMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 95
           ++MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS
Sbjct: 27  IKMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKS 86

Query: 96  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 155
           TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV
Sbjct: 87  TELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRV 146

Query: 156 TIMPKDIQLARRIRGERA 174
           TIMPKDIQLARRIRGERA
Sbjct: 147 TIMPKDIQLARRIRGERA 164

[Close]

BLAST of Spo20638.1 vs. TAIR (Arabidopsis)
Match: AT4G40040.1 (Histone superfamily protein)

HSP 1 Score: 256.9 bits (655), Expect = 8.800e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. TAIR (Arabidopsis)
Match: AT5G10980.1 (Histone superfamily protein)

HSP 1 Score: 256.9 bits (655), Expect = 8.800e-69
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. TAIR (Arabidopsis)
Match: AT1G09200.1 (Histone superfamily protein)

HSP 1 Score: 248.1 bits (632), Expect = 4.100e-66
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

[Close]

BLAST of Spo20638.1 vs. TAIR (Arabidopsis)
Match: AT3G27360.1 (Histone superfamily protein)

HSP 1 Score: 248.1 bits (632), Expect = 4.100e-66
Identity = 132/136 (97.06%), Postives = 133/136 (97.79%), Query Frame = 1

		  
Query: 38  MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTE 97
           MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTE 60

Query: 98  LLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTI 157
           LLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTI 120

Query: 158 MPKDIQLARRIRGERA 174
           MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Spo20638.1 vs. NCBI nr
BLAST of Spo20638.1 vs. UniProtKB/TrEMBL
BLAST of Spo20638.1 vs. ExPASy Swiss-Prot
BLAST of Spo20638.1 vs. TAIR (Arabidopsis)

BLAST of Spo20638.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|571542288\|ref\|XP_003552025.2\|	3.5e-67	95.8	PREDICTED: histone H3.3 [Glyci...	[more]
gi\|734400320\|gb\|KHN31394.1\|	3.5e-67	95.8	Histone H3.3 [Glycine soja]	[more]
gi\|763749932\|gb\|KJB17320.1\|	7.8e-67	97.1	hypothetical protein B456_003G...	[more]
gi\|937921062\|dbj\|BAS95979.1\|	2.3e-66	98.5	Os06g0130900, partial [Oryza s...	[more]
gi\|944265898\|gb\|KQL30138.1\|	6.6e-66	100.	hypothetical protein SETIT_018...	[more]

BLAST of Spo20638.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0B2RGD5_GLYSO	2.4e-67	95.8	Histone H3.3 OS=Glycine soja G...	[more]
K7MPE3_SOYBN	2.4e-67	95.8	Uncharacterized protein OS=Gly...	[more]
A0A0D2RDR1_GOSRA	5.4e-67	97.1	Uncharacterized protein OS=Gos...	[more]
A0A0P0WRT9_ORYSJ	1.6e-66	98.5	Os06g0130900 protein (Fragment...	[more]
V7CZU0_PHAVU	4.6e-66	94.5	Uncharacterized protein OS=Pha...	[more]

BLAST of Spo20638.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
H33_TOBAC	1.6e-67	100.	Histone H3.3 OS=Nicotiana taba...	[more]
H33_ORYSI	1.6e-67	100.	Histone H3.3 OS=Oryza sativa s...	[more]
H33_ORYCO	1.6e-67	100.	Histone H3.3 OS=Oryza coarctat...	[more]
H33_MEDSA	1.6e-67	100.	Histone H3.3 OS=Medicago sativ...	[more]
H33_LOLTE	1.6e-67	100.	Histone H3.3 OS=Lolium temulen...	[more]

BLAST of Spo20638.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
AT4G40030.2	3.0e-69	98.5	Histone superfamily protein	[more]
AT4G40040.1	8.8e-69	100.	Histone superfamily protein	[more]
AT5G10980.1	8.8e-69	100.	Histone superfamily protein	[more]
AT1G09200.1	4.1e-66	97.0	Histone superfamily protein	[more]
AT3G27360.1	4.1e-66	97.0	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 135..151 score: 9.9E-85coord: 95..112 score: 9.9E-85coord: 151..172 score: 9.9E-85coord: 40..54 score: 9.9E-85coord: 54..68 score: 9.9E-85coord: 117..135 score: 9.9E-85coord: 71..92 score: 9.9
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 33..173 score: 6.5E
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 71..173 score: 1.1
IPR000164	Histone H3/CENP-A	PROSITE	PS00322	HISTONE_H3_1	coord: 52..58 scor
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 104..112 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 38..169 score: 7.0
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 39..171 score: 5.8
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 39..170 score: 1.29

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006605	protein targeting
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo10643	0.73	Barchart \| Table
Spo23747	0.68	Barchart \| Table
Spo23236	0.67	Barchart \| Table
Spo24108	0.66	Barchart \| Table
Spo01362	0.65	Barchart \| Table