Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCAGAAGAATCTTCAAATGGGAAAGAAATACAAAACTGTCCACAAAAATCCCCCGTTAATAACACAAATCAAACCAAACAGTCACAAGACTCACAACCGCTTCATCGATACCGTTAATTATGTTAGTTTCTCCATCTTCCTCTTACTTTGCGTCTTTAACAACAACAACGTAAATTCAAATCCCTAAATCCCCAAATTCAATCACACTTTCCCCAATTGTATTCCCTAGTTCTGTAATTAAAATCAAAGTCATATTCAACCTACGAATTTTGGATGAAATTATGAGCCATTTGAGATCCATTTGCAGAACAAATGCTGTCTACTCTTCCTTTGTATGTTGCTGTAGAGCTCGCGTTCGGTATTTGAGCTCAGAATCATCTAGAGTTCCTTTTTCAAAACCTAATTTGAGCTCGTTTCCTTCTCTTTCCTCCGATTCGCCGGAGTTGGTTCGGGGAGAGCCGTGGTTACGGTTGAATCATCGGAGATATGTTACTCGCGCTTCTAATTGGACCGGCGAGAAATCCCCCTATGACGTTCTAGGTTTGTTTTTATTTTATTTTGTTTCGGGAATATTAATGATGTTTTGGATTCAATCTATGCTAAATTAACTAACTAAGCTATTTGTAATTGCATATCCTTGTTTTATAAGTTGTTGCTAACTTGCTATGTTATGTTTTCAACATGTTATGGAAAATGATTGTCTGCTGATTCTGTAATGGAATGGTTGTTTTCAGAAAAAATTACTACTTGGTATGTGTTGCTACTAATTGCCTAATATGTGTTGCTACTTGGTAGAAGTGGATAGTGTTGGCTTCGTAATTTTCGAAGTTCAATTCACGACTACAACAAGTTTAGATTAGATTCAATTAGTTCATATAAGCTCCAATAGTCCAATTACATTCAAATTAGTGAATTTCAAGTGAAATGAACGAAATAGGAGACTTTTGCTAACAGCAAGGATTCAATTAAGGTTGGAAGATATGTGAAATTGATGCAGCGTAAGCCTAGGACATAGTGGGAAATTCATTAAACTTAAAGTCATATAATGTGAGATAGGATGTCTTATTCTTATTTGACCATTTGTTCCTTATTTTGTAGGTTAATGTTTGATTATCTTTTTGCTATGTTCTTATTTGTGAATTGCGGTTTTCACTTTACAGAACTAGAGAGAGACGCGGATGAAGAGAAAGTAAAAGTGGCTTACAGGCGCTTGGCCAAGTTTTATCATCCTGATGGTTTGTCTCCTTAGTCTTTACCTTAAATTTGTTTACCTATCGATTTGATTATAGTTTTCGTTGACGTGTTAAAAAGGAACCATTAATTTGGTTGGGTTATAATACATATAGAGCCCTATACAGCACTCTCAGGTATAATCTAGTTTTCATAGGCTATGGACCTAATTATACTACTACTACTTGAGGCGCTGTTGTATTACAAGCTGGACCTTGTCAAATATCATAACTTATGAATTCCTACTCAACCGTTGGTGTTAACTACAAAGTACAAACTGCATGCTAGAAACAATCGTGTTATCATTTGAAGATCACAAGTTCATAACCCCTCACTAATCACCACTTATGCAAATAGGAGTAATAGGATTCCCTCGAAATGAAAACATTGATTATTTTTTCTATTATCAAAGCTCTGTATAAGAATATCGTGGTGCAATTTTACTTATAAAATGTGCTTTAATTTGACTCATCATACCTTTTGTAGTCTATGATGGTAGAGGCAATCTCGAGGAAGGTGAAACAGCTGAAACCCGATTTATTAAAATCCAAGCAGCTTATGAGCTGCTTGTTGATGGGGACAGGAGGAGAAAATATGACGTGGAAAACCGGGTGAACCCAATGAAGGTGAAATTATGACTCTAATTTCTTGAATGGGAGTTATTACAAAAAATAAGTAGTTCAGTTGTCATATTTATCTTCTCTGTTTATCAATACACTTAGTTTTTTATTTAAAATGGAAATAGTAATCCGTATATCTTGTTTTTTATAGGCTTCTCAAGCATGGATGGAGTGGCTCATAAAGAAGCGAAAAGCATTCGACCAGCGCGGTGGAATGGCAATTGCAGCATGGGCTGAGCAGCAGCAGCGTGAAATAAACTTGAGAGCACGACAACGTACTCGATCAAAGGTATCTAGTTTGTTTTTCCTACTTTCAAATTCAGTCAAAGTGCGTCCCTACTTATTCTCCTGGCTGGATGATGTTGCTAAAACCAGAATTTCAGATAAGTAAACATACTACTGTGTTCAAGACAATTACTATTACTATAGGATCGACTTTATGATATGTTTTCTGTACTTCTTCCAACCAAAGCCTACAAAGTTAACGAAAATGCATTAGACGGCTGATCCAATGCTCTTTGAGCATGTCAAACACTCTGACTTACTATCCATCCCTAAACAGTAGGTCAAATGATGGAAGTGTCTTAGAATCTTATTATACCACAACTATCTTTTACTATTTGAATTTTAAATTTTTAATCTCTTTCGAAACAAGTGTATAGTCATTCTCATTACCAAAACAAGTGTATATTTTAAAACCCGTAAGTTTCCACTGGTGTGATGTTCGTCAATGGGAAGATGTGATGGTAAATTAGTAAGGATATCTCCTTGAAACCTTTAAGGCTTCTTTGTTGCAATCATTTATTACAAAGACGTATTTTGGATGGTGAATTGACACTTAATATAACGAGTTTCAGGTTGATCCTGAAGAAGAGAAAAGGATTCTAGCAAAGGAAAAGAAGGCATCTGTAGAGAACTTCCAGACCACACTTAGGAGGCATACACTTGTGTTAAAGAAGAGGGACTTAATGCGTCGAAAGAAAGCTGAGGAGGAAAAGGATAAAGAGATTCGCCGTCTGTTAGCCTTAGAGGGATTTGAATTGGAAAGTGAAGATGAGTAGCTTTGCTGCATGTTTGGATTCAGTTTATTCTTATAGGTATTCAACTTTAATGTATACATTCTCATTTATTGATAGTGTTGTACAAAAATGTATAACTGTATATACATGCTGGAGACGACAAACAGAGTATTTATGAAAGAAAAGGAGGACATCTGTTTTCCCTCTGCTTCATGTTGAGCAGATTCATGTTGCTCTGTCTAAATTGCTTAGTTTGTACGTAATCGTAGTGCTTGGAGCGCTGTGTGCTTCGAATGATTATACAAGTTTTGTTACTATAAACACGGGAACAAGTAACATGAATGTTACTAGTCGTTGATAAAAAGCAAGAGTGAAGGAG TCAGAAGAATCTTCAAATGGGAAAGAAATACAAAACTGTCCACAAAAATCCCCCGTTAATAACACAAATCAAACCAAACAGTCACAAGACTCACAACCGCTTCATCGATACCGTTAATTATGTTAGTTTCTCCATCTTCCTCTTACTTTGCGTCTTTAACAACAACAACGTAAATTCAAATCCCTAAATCCCCAAATTCAATCACACTTTCCCCAATTGTATTCCCTAGTTCTGTAATTAAAATCAAAGTCATATTCAACCTACGAATTTTGGATGAAATTATGAGCCATTTGAGATCCATTTGCAGAACAAATGCTGTCTACTCTTCCTTTGTATGTTGCTGTAGAGCTCGCGTTCGGTATTTGAGCTCAGAATCATCTAGAGTTCCTTTTTCAAAACCTAATTTGAGCTCGTTTCCTTCTCTTTCCTCCGATTCGCCGGAGTTGGTTCGGGGAGAGCCGTGGTTACGGTTGAATCATCGGAGATATGTTACTCGCGCTTCTAATTGGACCGGCGAGAAATCCCCCTATGACGTTCTAGAACTAGAGAGAGACGCGGATGAAGAGAAAGTAAAAGTGGCTTACAGGCGCTTGGCCAAGTTTTATCATCCTGATGTCTATGATGGTAGAGGCAATCTCGAGGAAGGTGAAACAGCTGAAACCCGATTTATTAAAATCCAAGCAGCTTATGAGCTGCTTGTTGATGGGGACAGGAGGAGAAAATATGACGTGGAAAACCGGGTGAACCCAATGAAGGCTTCTCAAGCATGGATGGAGTGGCTCATAAAGAAGCGAAAAGCATTCGACCAGCGCGGTGGAATGGCAATTGCAGCATGGGCTGAGCAGCAGCAGCGTGAAATAAACTTGAGAGCACGACAACGTACTCGATCAAAGGTTGATCCTGAAGAAGAGAAAAGGATTCTAGCAAAGGAAAAGAAGGCATCTGTAGAGAACTTCCAGACCACACTTAGGAGGCATACACTTGTGTTAAAGAAGAGGGACTTAATGCGTCGAAAGAAAGCTGAGGAGGAAAAGGATAAAGAGATTCGCCGTCTGTTAGCCTTAGAGGGATTTGAATTGGAAAGTGAAGATGAGTAGCTTTGCTGCATGTTTGGATTCAGTTTATTCTTATAGGTATTCAACTTTAATGTATACATTCTCATTTATTGATAGTGTTGTACAAAAATGTATAACTGTATATACATGCTGGAGACGACAAACAGAGTATTTATGAAAGAAAAGGAGGACATCTGTTTTCCCTCTGCTTCATGTTGAGCAGATTCATGTTGCTCTGTCTAAATTGCTTAGTTTGTACGTAATCGTAGTGCTTGGAGCGCTGTGTGCTTCGAATGATTATACAAGTTTTGTTACTATAAACACGGGAACAAGTAACATGAATGTTACTAGTCGTTGATAAAAAGCAAGAGTGAAGGAG ATGAGCCATTTGAGATCCATTTGCAGAACAAATGCTGTCTACTCTTCCTTTGTATGTTGCTGTAGAGCTCGCGTTCGGTATTTGAGCTCAGAATCATCTAGAGTTCCTTTTTCAAAACCTAATTTGAGCTCGTTTCCTTCTCTTTCCTCCGATTCGCCGGAGTTGGTTCGGGGAGAGCCGTGGTTACGGTTGAATCATCGGAGATATGTTACTCGCGCTTCTAATTGGACCGGCGAGAAATCCCCCTATGACGTTCTAGAACTAGAGAGAGACGCGGATGAAGAGAAAGTAAAAGTGGCTTACAGGCGCTTGGCCAAGTTTTATCATCCTGATGTCTATGATGGTAGAGGCAATCTCGAGGAAGGTGAAACAGCTGAAACCCGATTTATTAAAATCCAAGCAGCTTATGAGCTGCTTGTTGATGGGGACAGGAGGAGAAAATATGACGTGGAAAACCGGGTGAACCCAATGAAGGCTTCTCAAGCATGGATGGAGTGGCTCATAAAGAAGCGAAAAGCATTCGACCAGCGCGGTGGAATGGCAATTGCAGCATGGGCTGAGCAGCAGCAGCGTGAAATAAACTTGAGAGCACGACAACGTACTCGATCAAAGGTTGATCCTGAAGAAGAGAAAAGGATTCTAGCAAAGGAAAAGAAGGCATCTGTAGAGAACTTCCAGACCACACTTAGGAGGCATACACTTGTGTTAAAGAAGAGGGACTTAATGCGTCGAAAGAAAGCTGAGGAGGAAAAGGATAAAGAGATTCGCCGTCTGTTAGCCTTAGAGGGATTTGAATTGGAAAGTGAAGATGAGTAG MSHLRSICRTNAVYSSFVCCCRARVRYLSSESSRVPFSKPNLSSFPSLSSDSPELVRGEPWLRLNHRRYVTRASNWTGEKSPYDVLELERDADEEKVKVAYRRLAKFYHPDVYDGRGNLEEGETAETRFIKIQAAYELLVDGDRRRKYDVENRVNPMKASQAWMEWLIKKRKAFDQRGGMAIAAWAEQQQREINLRARQRTRSKVDPEEEKRILAKEKKASVENFQTTLRRHTLVLKKRDLMRRKKAEEEKDKEIRRLLALEGFELESEDE Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20648.1 vs. NCBI nr
Match: gi|902177081|gb|KNA08894.1| (hypothetical protein SOVF_158520 [Spinacia oleracea]) HSP 1 Score: 526.6 bits (1355), Expect = 2.600e-146 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo20648.1 vs. NCBI nr
Match: gi|731361895|ref|XP_010692603.1| (PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 444.1 bits (1141), Expect = 1.700e-121 Identity = 228/271 (84.13%), Postives = 245/271 (90.41%), Query Frame = 1
BLAST of Spo20648.1 vs. NCBI nr
Match: gi|590598459|ref|XP_007018901.1| (Chaperone DnaJ-domain superfamily protein isoform 1 [Theobroma cacao]) HSP 1 Score: 357.5 bits (916), Expect = 2.100e-95 Identity = 190/279 (68.10%), Postives = 226/279 (81.00%), Query Frame = 1
BLAST of Spo20648.1 vs. NCBI nr
Match: gi|728848198|gb|KHG27641.1| (Chaperone DnaJ [Gossypium arboreum]) HSP 1 Score: 357.5 bits (916), Expect = 2.100e-95 Identity = 184/273 (67.40%), Postives = 226/273 (82.78%), Query Frame = 1
BLAST of Spo20648.1 vs. NCBI nr
Match: gi|823136309|ref|XP_012467911.1| (PREDICTED: uncharacterized J domain-containing protein C4H3.01 [Gossypium raimondii]) HSP 1 Score: 357.1 bits (915), Expect = 2.800e-95 Identity = 184/273 (67.40%), Postives = 225/273 (82.42%), Query Frame = 1
BLAST of Spo20648.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNQ4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_158520 PE=4 SV=1) HSP 1 Score: 526.6 bits (1355), Expect = 1.800e-146 Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
BLAST of Spo20648.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIA1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g021410 PE=4 SV=1) HSP 1 Score: 444.1 bits (1141), Expect = 1.200e-121 Identity = 228/271 (84.13%), Postives = 245/271 (90.41%), Query Frame = 1
BLAST of Spo20648.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PW52_GOSAR (Chaperone DnaJ OS=Gossypium arboreum GN=F383_16347 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 1.500e-95 Identity = 184/273 (67.40%), Postives = 226/273 (82.78%), Query Frame = 1
BLAST of Spo20648.1 vs. UniProtKB/TrEMBL
Match: A0A061FGE8_THECC (Chaperone DnaJ-domain superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_034994 PE=4 SV=1) HSP 1 Score: 357.5 bits (916), Expect = 1.500e-95 Identity = 190/279 (68.10%), Postives = 226/279 (81.00%), Query Frame = 1
BLAST of Spo20648.1 vs. UniProtKB/TrEMBL
Match: A0A0D2NRD0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G219900 PE=4 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 1.900e-95 Identity = 184/273 (67.40%), Postives = 225/273 (82.42%), Query Frame = 1
BLAST of Spo20648.1 vs. ExPASy Swiss-Prot
Match: DNAJ_FINM2 (Chaperone protein DnaJ OS=Finegoldia magna (strain ATCC 29328) GN=dnaJ PE=3 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 8.000e-10 Identity = 31/71 (43.66%), Postives = 48/71 (67.61%), Query Frame = 1
BLAST of Spo20648.1 vs. ExPASy Swiss-Prot
Match: DNAJ_CALS8 (Chaperone protein DnaJ OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN=dnaJ PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.400e-9 Identity = 33/71 (46.48%), Postives = 47/71 (66.20%), Query Frame = 1
BLAST of Spo20648.1 vs. ExPASy Swiss-Prot
Match: DNAJ_HALOH (Chaperone protein DnaJ OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=dnaJ PE=3 SV=1) HSP 1 Score: 65.1 bits (157), Expect = 1.400e-9 Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1
BLAST of Spo20648.1 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRJ (Chaperone protein DnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.000e-9 Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 1
BLAST of Spo20648.1 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRD (Chaperone protein DnaJ OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaJ PE=3 SV=1) HSP 1 Score: 63.5 bits (153), Expect = 4.000e-9 Identity = 37/81 (45.68%), Postives = 46/81 (56.79%), Query Frame = 1
BLAST of Spo20648.1 vs. TAIR (Arabidopsis)
Match: AT1G77930.1 (Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 328.9 bits (842), Expect = 2.900e-90 Identity = 182/274 (66.42%), Postives = 219/274 (79.93%), Query Frame = 1
BLAST of Spo20648.1 vs. TAIR (Arabidopsis)
Match: AT5G59610.1 (Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 63.5 bits (153), Expect = 2.200e-10 Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 1
BLAST of Spo20648.1 vs. TAIR (Arabidopsis)
Match: AT2G17880.1 (Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 56.6 bits (135), Expect = 2.700e-8 Identity = 42/125 (33.60%), Postives = 60/125 (48.00%), Query Frame = 1
BLAST of Spo20648.1 vs. TAIR (Arabidopsis)
Match: AT3G62600.1 (DNAJ heat shock family protein) HSP 1 Score: 56.6 bits (135), Expect = 2.700e-8 Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
BLAST of Spo20648.1 vs. TAIR (Arabidopsis)
Match: AT4G36040.1 (Chaperone DnaJ-domain superfamily protein) HSP 1 Score: 56.2 bits (134), Expect = 3.600e-8 Identity = 47/136 (34.56%), Postives = 58/136 (42.65%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20648.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20648.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20648.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo20648.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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