Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCACCAAACAACTCTACATATCAAAGGGTTTTCCTTTCCATTCCATCTCATCGCAATCCCTTTGTTGATTCCATTTCCTTTACCCTGTTTGAACCAAACGCCCCCTTAAATCTCATTTTCTTTCCTTCCCCTTCCCTTTCCCTTTTCCTTTCCATTTCCCCTTCTCCAACCAAACGGCCCCTTATCGTTTTCATAATTTCTTATTTACAATGGGTGTACAATAAATATTGTACACCGGAGTAAAAGTTAACATTAAATGCTTAAAAGTTATGCATATATATGAAAAAGTTATCTATTTTCCAGTGATAATTTTTTTCATTTTAGTAAAACTTATTTCTTCAAAATAACTAATAATGTATAAAATTAATCATTTAACCCTTTAAAAAATTTATCTATTAATTTTTTTACTAATATAAAAGTTAATCAAAATTAGATTAAAGTTAAAAAAAAAAGGGTTAAGTTATCTTGGTGTACAATAAATTTATTGTACACCTTGTGCGCGCAAGACCTTTCATATCGTTTTTCAATTTCCCCTCTTGAATAACTCTACTGAAGCCTCAAAACCAGCTGTGACTCTGTGAGTAGTCGAATAGTGGTGTTGGGGCACCATTTCTGCATTTCTCCTCCTCCAGAGTTCAGGTTGAGCTCTCTCTCTCTCTGATGATTCCAAGATTTCCCCTCTTTCTCTCTCCTCCTAATTATTTTGTTAATTCCAAAATTTCCTCTTAACAAATTTTCTATTTTCTTCTTAACAATTTCAGGGATTGAAGACTATCCTGTGAGTGCTGGAAATTGCGAAAACTTGATCCGGTCTTCCATCTCTCCCAATTTTATTTTATGTAAAAGTTGTGATTTTTTATTCTCTTTTGATATCATTCTCATCGTAGATTCTGTAAAGAAAGATAAGTCGGTACTTTAAAATGCTTAAAATGTGAAGTTTTAAACCATTTGAAACCCTAACCCTTAATTTTTATGCTCGAATTTTAACATGTTATGAGAACTGCATTTGAGATGTGGAACCTAACCCTGACCTTAAACCCTTTGACATGTGGTTTTTCCGCGCAATGCTGGCGGATTTAGGTTCAGTGTGCGGTGTTTTAACTTTATGAGGGAAAATACTTGTATGTTCCGTGATTAGGGTTTCAATTCTGCTCAATTGTCTGTTTCTGCGTAATGCAAGCGGGTTTAGGGTCTTGGTGTGCTTTAACGGTCACTATGTGGTTGATGTTCCATTATTATGGTTTTAATAACTGTCTATTTCCGCAGCGCAGATAGGTTTAGAGTATTGGTGTGTTGTTTTGACTGCCATTATGTGGTTGATGTTCCATTATGGTTTTAATTCGTTTTAGTTGACTGATATGAGCTCGAATCTAGAGGAAGAAGACCTAGTGGATGGTAGTTTCTTGAAGACCTATGTTGATCGTTGTTGCTCGATAGTTGATAGGCTATGGGTCGATGGTATAGATGTAGCTCCTTAAGCTTAATTGAGATGGTGTTGCTGAACTATTTAAGCAATAGTTGGGGAGACTTATTGATTATTATGATCAAATACGTCACATGTGTTTGCATGTTTTTGAAATATATTGTAGCTTTGACCTTTTGGCTCGGTATTCTTCTTCCTGTGATGTTTTTTAGCTTTTGTAGTGAGATTGTTATCGTTGATCCTGCTATTTGAGCTCAGTGTATTGTCATTGTTTGAGGCTTCGAGCAATGTTTTATGTGAAGAATTGTGATTTGACTTTGTTTGTTGAACGGTTGAACACTTTCTGGAGAAATTTGAACATAAAATTTAATGGAGTTTTCCTTTGAAAGGGTTAGTTGCCTGGTGTTTAGCTTGTTGACCTCAGTTTTAAAGTTCTGTTTGCGAAGCAGAAATGAGTTTTACCATGTTAGACTTCGGGTGTTCATAAATGTTCTTCGAGGATCTTATCATATATGAAGTATCAACCCAATTTCAAATTTTTTTTTGGTTGAATAATTGGATTTTATCTGAAAAGATTAGTATCAATGTCGGCATTACCCAATGCCTCTGAAGAGACTGCTATAGTGTATCCAAGGTGGGGAAGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGTAAGGGGGTGTGTTCACACTTTTGTTATTCGATGGGGTGACTTGTATACACTATTTTTTACGGGATGAGTTGTACACCCTTGTACAGTAGCAACAATATTATACGCTTGATTTGGAACACAACTTGCTACTTCACCTTTATTAAAAACAATGTACAGTTTCATTGGACACCTTTTATGTGGTCTTTTTTAATTCAAAGTCAAGTTTGAATGAGTAGGTTGCCCTTTATATTCAATTTTCATTTTCCTCTAAGAACCTGCACTAAAATACCCTCAACTTCCCTCCAGTTTTGGTTCTAGAGTGGCAGCTTGAGTATTTGGTATTACTTACTATCCATTAGCCGAACTTGAAAATCAACCTCTCTAAGTGTAGTTTTGCAGGAATTAATCTTGATTCTTCTGTTCTTAGTCAGTATGCAGCTATGGTTGGGTGTCAAGTTGAGAGTTGGCCTCTTAGCTACCTGGGTTTGCCTCTAGGAGGTAATCCGCGTGCAAAATCATTCTCGGAGCCAGTTGTTTCAAGGATTTCAAAGACTTGATGGGTGGAAGAAGGTCTACTTTTCTCTTCGTGGGAGGATTACTTTGATCAAGTCATGCTTGTCTAGTATCCCTCTCTATTATCTCTCCCTTTTTTAAGACCCCACTGGCTATTGCAAGTAAGTTTGAGAGAATGATGAGGAACTTTTTGCGATCAGGGTCCATCAATATGAGGAAAGATGACCTTGTGAGCTGGGAAATGGTATATCGGCCAAAGGACGAAGGGGGTCTAGGCTTTGGGAAAGTGGTGTAAAAAAATATTGCTTTGGTCGGAAAGTGGTTGTGGCATTTTCTTCCTGATCCCGAGTCTTTATGGCATCGAGGCATAAAGAGAAAATATGGATTGCAATCAAATGGGTGGGAATAGAGATGCCCAAAGTGCTCTTTCAGTAACACATGGTTGTCCATGGAAGTTCATCTCTTAGGTTTTCCATCTTTCCTTTCCTTTAGTGAAGTTCAAGGTAGGGAATGGTGGTCGTTTACGTTTTTGGGAAGATGTTTGGAGGGGAGAACAATCATTATGTGTTCAGTACCCTCTTTTATTTCAATTGTCCTCGCTACACAATGCCAAGGTGTCTAGTTCCTATGGTGATAGCATATGGAATTTACATTTTCGATGGTCTCCACGAGATAGGGAACTAGAGGAGTTTCCTTCTCTAATAGAGGTTCTTGATCTTCAATTAGCTACACGGGAGGATGCTAGAGTGTGGACTGGGGATTCATCAGGGTCTTTTTGTTGAAGGTCTTTTCTGGTTTACTTGAATTGACCCTCTAAGTTTCCAGCTTCCCCGGTAGCAAGTTTCATTTGGAAGGCGAAAGTACCTTTGAAGGTGAGGCCGTTTGTGTGGACATTGGCGTTAGGAAGGATCAACACTAATGATATGCTCCAAAAGCGTAGGCCAAGTTTGGTTATTTCCCCAAATATTTGCTTGCTTTGCGGTGCTAATAGCGAGTCATGTTCACATGTTTTCTTACATTGTGAAATGGCAAGTTACTTTTGGAGGAGATTGTTTGCGCTCCATGATGAGAGTTGGGTTTGCGCTTCAGAGATATTAGATTGATTTGGAGGGTTTGGTCAGGGTAAGGAAAAGGAAAAGGAGAAGAGATTGCTATGGCGCAATGCTTTCATGGCAATTATGTGGTGTGTGTGGTTGGAGAGAAACTCGAGGGTGTTTTCACAAGTTCCGTTGCCCTGTGAGTTATTGTGGAACAAAATCAAATGTTTAGCATCTTTATGGGCCAAGGGCAGTGGGGCTTTCAATAGTTACTTGGTGGGGGGGATACAAAGAAATTGGGGCAATCTGTAATTTTGCTTTCTAAAACAGAGGACTTCTTGTTCTCATTGTTTTGCTCTCCTTTATTCCTACTGTTAATATAATATAATCTTTTACTTATATAAAAAAAGAAGAAGATATATGTAGTGTGCACTTTTATTTCCTCATTTTTAATTGGAAATTGAACGAGTTTGATATAGAAAGTGCTATTCCCTACTTTCTTATTGGGTGTCTGTTGAGGTTAGGCACATTGGATGAATTGTTGTTATTTATTGAAAAATAATGTTGATTGGTATTCTAGCAGGGTAGTAATTTAGTGCATATTACAGTTTTTTGTACACATATAAATTGCAGCTTATTGGAAGTATAATTGTGTGTGTTAATCTCTTTGTAGGGGAAACAATGTTTATCAAAGTACAACTGCCTTGGAATGTGATAATCCCTTGTGAACATATGGATGTGAAAGGTTTGATGCTGCAGAAGTCAATCATACTACGACTGATGGAAGATTTTACATCCAAGAAGGCAACCAAAGAGCTTGGTTATCTGCTTGCAGTGACAACCCTGGACAACATAGGAGAGGGGAGAGTCAGGCAGCAGACTGGAGATGTTCTGTTTCCTGTTACCTTCAGTTGCCTCACCTTCAAGATTTTCCGTGGAGAGGTTTTGGAAGGAACTGTACACAAAGTGTTGAGGCATGGTGTGTTCTTGAGATGTGGACCCATCGAGACCATATTTCTTTCCGCTCAGAAGATGCCTGGCTATCAGCATGTCCCTGGTGAAAGTCCTATGTTCATTAGTGAGAAGCAGTCAAAGATTGAGAAAGATGTTGTTGTGCGCTTTTGTGTCATTGGGACTAAGTGGGTGGAGACTGAAAGGGAATTTCAGGCCGTGGTTGGTTTGGAGGGAGACTATCTTGGACCTGTCTGGTCTTAAAACTTGTTGCATCTTTAAACTAAACCTGTCAACTTATTCTCTAACTCTAGTAGGATGTAAATATTTTGGTGTTACACCATCAACTGTCTCTTGACTGTGTTACTCCTTTGGCTCAGAGAGTCAAGGCATTGGCAACGCAAGTATTACGACTGTCCATCGTTTGTAAACCTGCAGATGAGCTGATTGTAAGCATTTTCAACATCATGTGTAGAATTCAGCCTCAATTTTGCTTTCATTTTTCTTAACGTTGCTACGTTTTGGAAGAAATTTGTGTCCTTGCACTACGGGAGAGGCAGGGCGTTTTGAAACATACAGCTGGCTGAAGTCGGTTCTATGCAAAATTGCGTAGCAAATATACAATGGGCTTCCTTGTTTTCTAATTTTGAAGCATTCTGAAAAAAATACTCCGTAAAAAATACAAGAG ATGTCACCAAACAACTCTACATATCAAAGGTTGACTGATATGAGCTCGAATCTAGAGGAAGAAGACCTAGTGGATGGTAGTTTCTTGAAGACCTATGTTGATCGTTGTTGCTCGATAGTTGATAGGCTATGGGTCGATGGGGAAACAATGTTTATCAAAGTACAACTGCCTTGGAATGTGATAATCCCTTGTGAACATATGGATGTGAAAGGTTTGATGCTGCAGAAGTCAATCATACTACGACTGATGGAAGATTTTACATCCAAGAAGGCAACCAAAGAGCTTGGTTATCTGCTTGCAGTGACAACCCTGGACAACATAGGAGAGGGGAGAGTCAGGCAGCAGACTGGAGATGTTCTGTTTCCTGTTACCTTCAGTTGCCTCACCTTCAAGATTTTCCGTGGAGAGGTTTTGGAAGGAACTGTACACAAAGTGTTGAGGCATGGTGTGTTCTTGAGATGTGGACCCATCGAGACCATATTTCTTTCCGCTCAGAAGATGCCTGGCTATCAGCATGTCCCTGGTGAAAGTCCTATGTTCATTAGTGAGAAGCAGTCAAAGATTGAGAAAGATGTTGTTGTGCGCTTTTGTGTCATTGGGACTAAGTGGGTGGAGACTGAAAGGGAATTTCAGGCCGTGGTTGGTTTGGAGGGAGACTATCTTGGACCTGTCTGGTCTTAAAACTTGTTGCATCTTTAAACTAAACCTGTCAACTTATTCTCTAACTCTAGTAGGATGTAAATATTTTGGTGTTACACCATCAACTGTCTCTTGACTGTGTTACTCCTTTGGCTCAGAGAGTCAAGGCATTGGCAACGCAAGTATTACGACTGTCCATCGTTTGTAAACCTGCAGATGAGCTGATTGTAAGCATTTTCAACATCATGTGTAGAATTCAGCCTCAATTTTGCTTTCATTTTTCTTAACGTTGCTACGTTTTGGAAGAAATTTGTGTCCTTGCACTACGGGAGAGGCAGGGCGTTTTGAAACATACAGCTGGCTGAAGTCGGTTCTATGCAAAATTGCGTAGCAAATATACAATGGGCTTCCTTGTTTTCTAATTTTGAAGCATTCTGAAAAAAATACTCCGTAAAAAATACAAGAG ATGTCACCAAACAACTCTACATATCAAAGGTTGACTGATATGAGCTCGAATCTAGAGGAAGAAGACCTAGTGGATGGTAGTTTCTTGAAGACCTATGTTGATCGTTGTTGCTCGATAGTTGATAGGCTATGGGTCGATGGGGAAACAATGTTTATCAAAGTACAACTGCCTTGGAATGTGATAATCCCTTGTGAACATATGGATGTGAAAGGTTTGATGCTGCAGAAGTCAATCATACTACGACTGATGGAAGATTTTACATCCAAGAAGGCAACCAAAGAGCTTGGTTATCTGCTTGCAGTGACAACCCTGGACAACATAGGAGAGGGGAGAGTCAGGCAGCAGACTGGAGATGTTCTGTTTCCTGTTACCTTCAGTTGCCTCACCTTCAAGATTTTCCGTGGAGAGGTTTTGGAAGGAACTGTACACAAAGTGTTGAGGCATGGTGTGTTCTTGAGATGTGGACCCATCGAGACCATATTTCTTTCCGCTCAGAAGATGCCTGGCTATCAGCATGTCCCTGGTGAAAGTCCTATGTTCATTAGTGAGAAGCAGTCAAAGATTGAGAAAGATGTTGTTGTGCGCTTTTGTGTCATTGGGACTAAGTGGGTGGAGACTGAAAGGGAATTTCAGGCCGTGGTTGGTTTGGAGGGAGACTATCTTGGACCTGTCTGGTCTTAA MSPNNSTYQRLTDMSSNLEEEDLVDGSFLKTYVDRCCSIVDRLWVDGETMFIKVQLPWNVIIPCEHMDVKGLMLQKSIILRLMEDFTSKKATKELGYLLAVTTLDNIGEGRVRQQTGDVLFPVTFSCLTFKIFRGEVLEGTVHKVLRHGVFLRCGPIETIFLSAQKMPGYQHVPGESPMFISEKQSKIEKDVVVRFCVIGTKWVETEREFQAVVGLEGDYLGPVWS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20677.1 vs. NCBI nr
Match: gi|902212985|gb|KNA17149.1| (hypothetical protein SOVF_082690 [Spinacia oleracea]) HSP 1 Score: 359.8 bits (922), Expect = 3.600e-96 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Spo20677.1 vs. NCBI nr
Match: gi|731356582|ref|XP_010689752.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 328.6 bits (841), Expect = 8.800e-87 Identity = 161/175 (92.00%), Postives = 169/175 (96.57%), Query Frame = 1
BLAST of Spo20677.1 vs. NCBI nr
Match: gi|1000957959|ref|XP_015576932.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 isoform X1 [Ricinus communis]) HSP 1 Score: 290.0 bits (741), Expect = 3.500e-75 Identity = 135/188 (71.81%), Postives = 164/188 (87.23%), Query Frame = 1
BLAST of Spo20677.1 vs. NCBI nr
Match: gi|255563208|ref|XP_002522607.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 isoform X2 [Ricinus communis]) HSP 1 Score: 288.1 bits (736), Expect = 1.300e-74 Identity = 132/175 (75.43%), Postives = 157/175 (89.71%), Query Frame = 1
BLAST of Spo20677.1 vs. NCBI nr
Match: gi|225432916|ref|XP_002284221.1| (PREDICTED: DNA-directed RNA polymerase V subunit 7 [Vitis vinifera]) HSP 1 Score: 287.0 bits (733), Expect = 2.900e-74 Identity = 130/175 (74.29%), Postives = 159/175 (90.86%), Query Frame = 1
BLAST of Spo20677.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_082690 PE=4 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 2.500e-96 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Spo20677.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EFY9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g209220 PE=4 SV=1) HSP 1 Score: 328.6 bits (841), Expect = 6.100e-87 Identity = 161/175 (92.00%), Postives = 169/175 (96.57%), Query Frame = 1
BLAST of Spo20677.1 vs. UniProtKB/TrEMBL
Match: F6HDY5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g04760 PE=4 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 5.400e-75 Identity = 132/187 (70.59%), Postives = 164/187 (87.70%), Query Frame = 1
BLAST of Spo20677.1 vs. UniProtKB/TrEMBL
Match: B9S9D8_RICCO (DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus communis GN=RCOM_0884250 PE=4 SV=1) HSP 1 Score: 288.1 bits (736), Expect = 9.200e-75 Identity = 132/175 (75.43%), Postives = 157/175 (89.71%), Query Frame = 1
BLAST of Spo20677.1 vs. UniProtKB/TrEMBL
Match: A5BM26_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043525 PE=4 SV=1) HSP 1 Score: 287.0 bits (733), Expect = 2.100e-74 Identity = 130/175 (74.29%), Postives = 159/175 (90.86%), Query Frame = 1
BLAST of Spo20677.1 vs. ExPASy Swiss-Prot
Match: NRPE7_ARATH (DNA-directed RNA polymerase V subunit 7 OS=Arabidopsis thaliana GN=NRPE7 PE=1 SV=1) HSP 1 Score: 258.8 bits (660), Expect = 5.400e-68 Identity = 114/175 (65.14%), Postives = 149/175 (85.14%), Query Frame = 1
BLAST of Spo20677.1 vs. ExPASy Swiss-Prot
Match: NRPD7_ARATH (DNA-directed RNA polymerase IV subunit 7 OS=Arabidopsis thaliana GN=NRPD7 PE=1 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 2.200e-53 Identity = 93/174 (53.45%), Postives = 135/174 (77.59%), Query Frame = 1
BLAST of Spo20677.1 vs. ExPASy Swiss-Prot
Match: RPB7L_ARATH (DNA-directed RNA polymerase subunit 7-like protein OS=Arabidopsis thaliana GN=NRPB7L PE=2 SV=1) HSP 1 Score: 108.2 bits (269), Expect = 1.200e-22 Identity = 67/192 (34.90%), Postives = 104/192 (54.17%), Query Frame = 1
BLAST of Spo20677.1 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 6.700e-18 Identity = 59/177 (33.33%), Postives = 99/177 (55.93%), Query Frame = 1
BLAST of Spo20677.1 vs. ExPASy Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 4.300e-17 Identity = 58/177 (32.77%), Postives = 100/177 (56.50%), Query Frame = 1
BLAST of Spo20677.1 vs. TAIR (Arabidopsis)
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain) HSP 1 Score: 258.8 bits (660), Expect = 3.000e-69 Identity = 114/175 (65.14%), Postives = 149/175 (85.14%), Query Frame = 1
BLAST of Spo20677.1 vs. TAIR (Arabidopsis)
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain) HSP 1 Score: 210.3 bits (534), Expect = 1.200e-54 Identity = 93/174 (53.45%), Postives = 135/174 (77.59%), Query Frame = 1
BLAST of Spo20677.1 vs. TAIR (Arabidopsis)
Match: AT4G14520.1 (DNA-directed RNA polymerase II-related) HSP 1 Score: 108.2 bits (269), Expect = 6.600e-24 Identity = 67/192 (34.90%), Postives = 104/192 (54.17%), Query Frame = 1
BLAST of Spo20677.1 vs. TAIR (Arabidopsis)
Match: AT5G59180.1 (DNA-directed RNA polymerase II) HSP 1 Score: 89.7 bits (221), Expect = 2.400e-18 Identity = 58/177 (32.77%), Postives = 100/177 (56.50%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20677.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo20677.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo20677.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo20677.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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