Spo20759 (gene) | SpinachBase

Overview


Name	Spo20759
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	CTC-interacting domain protein, putative
Location	SpoScf_02685 : 32703 .. 36168 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCTTGTCAATTGTGTCATTGTGTGTTTTGCAATAGATCTTGCATGAGAATATGAGGTTAGTGACAAATCACGAACATAACTAATCCCATTACCAAAAATTTCCATAAAAATCTGCTTATAGTACGTTAAATTTCATCATTTTAATAAAATATTAGAAAAAAAATTACTTAATTTTTTTCCTAAAGTACCTTTAAAAAGTTTCCTAATATATAGCAAAAATATCGCAATTTTTACTCCCACCACGTAACATCTTAACATTCAAATTCTATAACGAGATAACGTAAAAGCATTCAAATTCTATAACGAGATAACGTAAAAGCGAGAAACCACCTCACACAAGTTTTTGCACTTTTATTTTATTACTCCCACCACGTAACATCAAAACCTACAAATCCTATTACCAGATAGCATAAAAGCGAAACACCTCACACGAGTTTTACTAAAATGGATTGATGGTAAATAAAAATGCAGGAGTGGTGGTGGTGGTGAAAATGCAGTAAGCAAACGGTTACTATTTTTCACCCCTCCATTATTCGCACAATCTTACCCCACGCCCTCCCCCCTATATAATTGCGGAGTACGAGGACCGGAGAAAGCTACCTTCTTCATCGTTTTCTCTCTCCTGTAGACCTTCGTACCTTTTCGTCTTCGATCATCATCAATTCATCATTGTTTCTCGATTTCTAGGATTCTTTTCTACGATCGTTTATTCAATTTGTAAGTACTCTTTTCATTTTTGGATCATCTTTTTGTTTGTGTTCTTTATTTTCTTTAAATTTTCTCTGTCTTCATTATGGATTGACGTTGAAGAGCACCGAGAATTTATCATTTTTGGTGTGATGATGTTTAGTTTTACAATTTTTGCTTGTTTTATTTATCGAAATATCATGACTTTGATTAGTATATTAATGTTTTTGTTGTTTGATCAATGTTTCTGCTTTTCGTCGCTATTGACTGTCGGTAAATGGTTCTATATCGTTCGTTTGATGATTTTATAATTGCTTTGTCGATTTTTACTCGAAATGAGCTTTTGTGACGGTTTCTTGGATTATTTTCGCTTTCAATTGGAAGTTGTTGCCTTTTTTTTTTGGGGGGATGAGAAACAGATTGATTTTTAGGAAATGTAAAGCTAGGTTAGCTTGGTGTGCTAAGCCACCTAATTATGTCCTACTTTATAGCTGCAATGGCTCCTTCAATTGGTTTTTAAAACATTTTGATACTTGTTTATGTTACTCCCTCTTTTTTTTTAAATGCTTTGAACCGCCATTGCCAATGCATAATTTGACCATTAAATATCTCTAATTTTCTATTTGCAAAATTATAAAAATTTCATATTATGAAAATAAGTATTGTCACTAATCCAATATTTTACCTAATAACATTTGATTTCTATATATTGGTAAAATATTGAAGTCAAACTTAGTATATGAAGATTGCTAAAGTCAAAATGATGAATTTGAAAATAAACCGGAGAGAGTGCTTCATATGTGCTTAAACCGAACAAAGCCTTGTTAATTTGTTTTTGCATTCACAGGAATGGTGTCATTGCAAATAGGTTATTCGTATCCGTGCACCATAATATGCTTGTTGGTTCATTACGGTGCTCGACAGTGCTCGTTTTTAAGTTTACTGTTCTTTCTACTCTAGCGGAGTATGGAGTATAAACACAAGTCAAAGCAGCTACTTTACTGTTTCAAATATTTAAGAATTCTGTGAAATTAAGCTAAAAATTGCATTAACATTGTGGCATTTAGTACTACATTGGTAATATAAATTGAACTTTGATCGACCATTGATATTATAAAGCGATATTTCATTTTGCTTTGATATTGTAGAATAACTTATCTGTTTTGGATCAAAAGATTTTGGGTTAGATGACTTTTGTACGTCTTTGGCTGTTTATTGGATTTATCTTGTCCTTTAGTCGCCTACTCATTCCCCTATTGTTGAGCGGGGGAAACAGTTTTTGAAAGTTAAAACAATACATTTCATTTCTGCGGAGATTTGAAGTTTGAACTATGTTTTTTAGTTGTAAGCCATTAGTTTCACAAATCAATCTTTCTTAGTGACATGTAGGGAATTATTTATTGATGATAGTGAACAGAGTTGACTCATTGCCGGGCATTTGGTGTATCCATGTATGTTTCCTTGGTTGATGTATTTGTTTTGCTTTAACTGCAGTGTTTTTTACCAGCGGCTCGCCAAAATGAAATCAAGCACATCGACCCTGAATCCACATGCTGCTTCATACGTACCAGTCTCAAAGAGAGAAGTAAAGGACCATAAAGGGTCTAAGACCCTTCCTGTGAAAGCTGCTGTTTTAGTTAATGATCTCCCTGCTAAGGATGACTACAAGCTTAAGATATCGTTTGAAAAGTTTCAGGAAACAGACAGTAAATTCATTGATGAAGAGTCTGAAATGGACCTAGCTTATCTCCAGATGATGTTTCCTGGTGTTTCTGATCAGTCTGTTGCCGATGTCTATAATGTCAATAGCGGCGACTTGGATGCTGCAGTTGACATGCTGACCCACTTGGAGGTAATTATCTTGCTTGAATATTTACAGGTCTCGGTTAATTATTTGACAAAAGTTGGAATCCTGTTGTATTCTGTAATATGCTATATGTAACAGATTAATCCAAGCTTTTGTAGGGTTATTGATAAACGTTTTCATTGCTTTATCTATATGCAGTCTGTTGAGAATGTTCAGGATGGTTTCAATATTGAACAGTTCGAGGAGCCTGTTTCTTCGAGTGAGTGCTCATTGGCGAAGGCCGTAAATGTGGCAGGTGAATCTAGCAGCTCTGCACGTCCATCTGATTTAGCTGTTGCTACCTGATCTATCTCCATGGAAATCAAATGTCAACAGCTCAACTTAGTTTTACATTGATTTATGTGAATACAAGAGTGGTTAAATAACTGGAGCCCCTTATGCTTTTAGTTGTATAGTTATTTTTGCTACTTACTTCAAACAAGAACATCTTTGTTCTTTAGGAGAGTCATTACTCGTTGGATTTATTGGTCAATTGGCTGTTTGTCTGAAACAAATTCAGCAAACTCTTGAAATTAGGTTAATTTCCACTTGCCTTGGTACGTTGATGATCTTTGTCAATGGTGTGGGCTTAGGTTCCACAGTAGTTGTCAGAGATTGCAACTGATCAAGTGTTTGGAATTTAGGATGTCTGTGATGCTCATATCGAGTAACATGATGTATGTAGCAAGTTTTTATTGGTCTGGTAATTTGGAAAATCTGTGGAAATCGATTTTGTAAGCAGAGTGGTATGATGTTTGCTTCACTCGTGTTACTGGTTTGCAATTATTCAGTCAACTTGGCTCTTGGTCATCTTTGTAATTTGGTTATATGCCAAGTCAATTTGGGGTTTGTTCTCTGCATTTCTTGAATTAATAGTGGAAGAACTTTGTTTTTCCAAGATCACAATATGACTTCTTTTGATAAATG

mRNA sequence

ATGACCTTCGTACCTTTTCGTCTTCGATCATCATCAATTCATCATTGTTTCTCGATTTCTAGGATTCTTTTCTACGATCGTTTATTCAATTTTGTTTTTTACCAGCGGCTCGCCAAAATGAAATCAAGCACATCGACCCTGAATCCACATGCTGCTTCATACGTACCAGTCTCAAAGAGAGAAGTAAAGGACCATAAAGGGTCTAAGACCCTTCCTGTGAAAGCTGCTGTTTTAGTTAATGATCTCCCTGCTAAGGATGACTACAAGCTTAAGATATCGTTTGAAAAGTTTCAGGAAACAGACAGTAAATTCATTGATGAAGAGTCTGAAATGGACCTAGCTTATCTCCAGATGATGTTTCCTGGTGTTTCTGATCAGTCTGTTGCCGATGTCTATAATGTCAATAGCGGCGACTTGGATGCTGCAGTTGACATGCTGACCCACTTGGAGTCTGTTGAGAATGTTCAGGATGGTTTCAATATTGAACAGTTCGAGGAGCCTGTTTCTTCGAGTGAGTGCTCATTGGCGAAGGCCGTAAATGTGGCAGGTGAATCTAGCAGCTCTGCACGTCCATCTGATTTAGCTGTTGCTACCTGATCTATCTCCATGGAAATCAAATGTCAACAGCTCAACTTAGTTTTACATTGATTTATGTGAATACAAGAGTGGTTAAATAACTGGAGCCCCTTATGCTTTTAGTTGTATAGTTATTTTTGCTACTTACTTCAAACAAGAACATCTTTGTTCTTTAGGAGAGTCATTACTCGTTGGATTTATTGGTCAATTGGCTGTTTGTCTGAAACAAATTCAGCAAACTCTTGAAATTAGGTTAATTTCCACTTGCCTTGGTACGTTGATGATCTTTGTCAATGGTGTGGGCTTAGGTTCCACAGTAGTTGTCAGAGATTGCAACTGATCAAGTGTTTGGAATTTAGGATGTCTGTGATGCTCATATCGAGTAACATGATGTATGTAGCAAGTTTTTATTGGTCTGGTAATTTGGAAAATCTGTGGAAATCGATTTTGTAAGCAGAGTGGTATGATGTTTGCTTCACTCGTGTTACTGGTTTGCAATTATTCAGTCAACTTGGCTCTTGGTCATCTTTGTAATTTGGTTATATGCCAAGTCAATTTGGGGTTTGTTCTCTGCATTTCTTGAATTAATAGTGGAAGAACTTTGTTTTTCCAAGATCACAATATGACTTCTTTTGATAAATG

Coding sequence (CDS)

ATGACCTTCGTACCTTTTCGTCTTCGATCATCATCAATTCATCATTGTTTCTCGATTTCTAGGATTCTTTTCTACGATCGTTTATTCAATTTTGTTTTTTACCAGCGGCTCGCCAAAATGAAATCAAGCACATCGACCCTGAATCCACATGCTGCTTCATACGTACCAGTCTCAAAGAGAGAAGTAAAGGACCATAAAGGGTCTAAGACCCTTCCTGTGAAAGCTGCTGTTTTAGTTAATGATCTCCCTGCTAAGGATGACTACAAGCTTAAGATATCGTTTGAAAAGTTTCAGGAAACAGACAGTAAATTCATTGATGAAGAGTCTGAAATGGACCTAGCTTATCTCCAGATGATGTTTCCTGGTGTTTCTGATCAGTCTGTTGCCGATGTCTATAATGTCAATAGCGGCGACTTGGATGCTGCAGTTGACATGCTGACCCACTTGGAGTCTGTTGAGAATGTTCAGGATGGTTTCAATATTGAACAGTTCGAGGAGCCTGTTTCTTCGAGTGAGTGCTCATTGGCGAAGGCCGTAAATGTGGCAGGTGAATCTAGCAGCTCTGCACGTCCATCTGATTTAGCTGTTGCTACCTGA

Protein sequence

MTFVPFRLRSSSIHHCFSISRILFYDRLFNFVFYQRLAKMKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLKISFEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLESVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20759.1	Spo20759.1	mRNA

Homology

[Close]

BLAST of Spo20759.1 vs. NCBI nr
Match: gi|902174025|gb|KNA08346.1| (hypothetical protein SOVF_163440 [Spinacia oleracea])

HSP 1 Score: 301.6 bits (771), Expect = 1.000e-78
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLKISFEKFQE 99
           MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLKISFEKFQE
Sbjct: 1   MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLKISFEKFQE 60

Query: 100 TDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLESVENVQDGF 159
           TDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLESVENVQDGF
Sbjct: 61  TDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLESVENVQDGF 120

Query: 160 NIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT 199
           NIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT
Sbjct: 121 NIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT 159

[Close]

BLAST of Spo20759.1 vs. NCBI nr
Match: gi|731320367|ref|XP_010670768.1| (PREDICTED: polyadenylate-binding protein-interacting protein 6 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 182.6 bits (462), Expect = 6.800e-43
Identity = 109/168 (64.88%), Postives = 128/168 (76.19%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLK-------- 99
           MKSSTSTLNP+AASYVP+ KREV + K SKTL  +AAV  +  P  D YKLK        
Sbjct: 1   MKSSTSTLNPYAASYVPLFKREVNEDKTSKTLSGQAAVS-DAQPNVDGYKLKGQQADAAD 60

Query: 100 -ISFEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLE 159
            +S E  QE D KF+DEESEMDLAYLQM+FPGVSDQS+ADVY+VN GDLD+AV+MLTHLE
Sbjct: 61  GVSSENSQE-DGKFMDEESEMDLAYLQMIFPGVSDQSLADVYHVNRGDLDSAVEMLTHLE 120

Query: 160 SVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT 199
           S +N+ D  +IEQ E+PVS  +CS  KAVNV GESSSS+ PS+ AVAT
Sbjct: 121 SADNLPDVLDIEQPEKPVSPGQCSSVKAVNVTGESSSSSFPSESAVAT 166

[Close]

BLAST of Spo20759.1 vs. NCBI nr
Match: gi|502124677|ref|XP_004498625.1| (PREDICTED: polyadenylate-binding protein-interacting protein 5-like [Cicer arietinum])

HSP 1 Score: 104.4 bits (259), Expect = 2.400e-19
Identity = 71/181 (39.23%), Postives = 94/181 (51.93%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKRE----------VKDHKGSKTLPVKAAVL----------- 99
           MK   S+LNP AASYVP+SKR             D+ G+   P                 
Sbjct: 1   MKPRKSSLNPFAASYVPISKRPDAIRVPGPKGAMDYDGTVWFPTPQNTTNDVQFVNKSAH 60

Query: 100 ----VNDLPAKDDYKLKISFEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNV 159
               V + PA   Y +       Q TD++F+DEE ++DL YL+M FPG+SDQS+ DVYNV
Sbjct: 61  KLSPVKNQPASSSYYVSPPQSMVQLTDNQFMDEEVDIDLEYLRMTFPGISDQSLVDVYNV 120

Query: 160 NSGDLDAAVDMLTHLE------SVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSSS 190
           NSGDLDAA+DML+ LE      S  N+ D  +I    EP   ++ +  K  NV  E+ SS
Sbjct: 121 NSGDLDAAIDMLSQLEFDDGVDSSGNLPDTLDIGDVSEPEFPADSASLKQKNVTAEAGSS 180

[Close]

BLAST of Spo20759.1 vs. NCBI nr
Match: gi|567917126|ref|XP_006450569.1| (hypothetical protein CICLE_v10009480mg [Citrus clementina])

HSP 1 Score: 97.8 bits (242), Expect = 2.200e-17
Identity = 72/185 (38.92%), Postives = 94/185 (50.81%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKD-------------------HKG------SKTLPVK 99
           M+   S+LNP+AASYVP+SKRE  D                   H G       K     
Sbjct: 1   MRPGVSSLNPYAASYVPLSKREAYDRTEPITKDFKRSNENVWYAHPGHVTQYHGKVSCDS 60

Query: 100 AAVLVNDLPAKDDYKLKIS--FEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVY 159
           +A     LP  +   +K       +  +  + +DEE EMDL YLQM FPG+S+QS+ DVY
Sbjct: 61  SAQSAQKLPNPEGSTVKSQPLHGSYSSSSKQMMDEEFEMDLEYLQMSFPGLSNQSLTDVY 120

Query: 160 NVNSGDLDAAVDMLTHL-----ESVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSS 193
             N+ DLDA VDMLT L     ES EN+ D  +I    E  SSSEC+  K   V GE+++
Sbjct: 121 LANNQDLDATVDMLTQLEFDTIESSENLPDTLDIGDVSESGSSSECAAMKLKTVVGEATA 180

[Close]

BLAST of Spo20759.1 vs. NCBI nr
Match: gi|567917124|ref|XP_006450568.1| (hypothetical protein CICLE_v10009480mg [Citrus clementina])

HSP 1 Score: 97.4 bits (241), Expect = 2.900e-17
Identity = 75/198 (37.88%), Postives = 98/198 (49.49%), Query Frame = 1


		  
Query: 27  RLFNFVFYQRLAKMKSSTSTLNPHAASYVPVSKREVKD-------------------HKG 86
           R+F F        M+   S+LNP+AASYVP+SKRE  D                   H G
Sbjct: 12  RIFRFA-------MRPGVSSLNPYAASYVPLSKREAYDRTEPITKDFKRSNENVWYAHPG 71

Query: 87  ------SKTLPVKAAVLVNDLPAKDDYKLKIS--FEKFQETDSKFIDEESEMDLAYLQMM 146
                  K     +A     LP  +   +K       +  +  + +DEE EMDL YLQM 
Sbjct: 72  HVTQYHGKVSCDSSAQSAQKLPNPEGSTVKSQPLHGSYSSSSKQMMDEEFEMDLEYLQMS 131

Query: 147 FPGVSDQSVADVYNVNSGDLDAAVDMLTHL-----ESVENVQDGFNIEQFEEPVSSSECS 193
           FPG+S+QS+ DVY  N+ DLDA VDMLT L     ES EN+ D  +I    E  SSSEC+
Sbjct: 132 FPGLSNQSLTDVYLANNQDLDATVDMLTQLEFDTIESSENLPDTLDIGDVSESGSSSECA 191

[Close]

BLAST of Spo20759.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QP52_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_163440 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.000e-79
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLKISFEKFQE 99
           MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLKISFEKFQE
Sbjct: 1   MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLKISFEKFQE 60

Query: 100 TDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLESVENVQDGF 159
           TDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLESVENVQDGF
Sbjct: 61  TDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLESVENVQDGF 120

Query: 160 NIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT 199
           NIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT
Sbjct: 121 NIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT 159

[Close]

BLAST of Spo20759.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CY83_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g043680 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.800e-43
Identity = 109/168 (64.88%), Postives = 128/168 (76.19%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKDHKGSKTLPVKAAVLVNDLPAKDDYKLK-------- 99
           MKSSTSTLNP+AASYVP+ KREV + K SKTL  +AAV  +  P  D YKLK        
Sbjct: 1   MKSSTSTLNPYAASYVPLFKREVNEDKTSKTLSGQAAVS-DAQPNVDGYKLKGQQADAAD 60

Query: 100 -ISFEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHLE 159
            +S E  QE D KF+DEESEMDLAYLQM+FPGVSDQS+ADVY+VN GDLD+AV+MLTHLE
Sbjct: 61  GVSSENSQE-DGKFMDEESEMDLAYLQMIFPGVSDQSLADVYHVNRGDLDSAVEMLTHLE 120

Query: 160 SVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSSSARPSDLAVAT 199
           S +N+ D  +IEQ E+PVS  +CS  KAVNV GESSSS+ PS+ AVAT
Sbjct: 121 SADNLPDVLDIEQPEKPVSPGQCSSVKAVNVTGESSSSSFPSESAVAT 166

[Close]

BLAST of Spo20759.1 vs. UniProtKB/TrEMBL
Match: A0A067GIU8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029518mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 72/185 (38.92%), Postives = 94/185 (50.81%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKD-------------------HKG------SKTLPVK 99
           M+   S+LNP+AASYVP+SKRE  D                   H G       K     
Sbjct: 1   MRPGVSSLNPYAASYVPLSKREAYDRTEPITKDFKRSNENVWYAHPGHVTQYHGKVSCDS 60

Query: 100 AAVLVNDLPAKDDYKLKIS--FEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVY 159
           +A     LP  +   +K       +  +  + +DEE EMDL YLQM FPG+S+QS+ DVY
Sbjct: 61  SAQSAQKLPNPEGSTVKSQPLHGSYSSSSKQMMDEEFEMDLEYLQMSFPGLSNQSLTDVY 120

Query: 160 NVNSGDLDAAVDMLTHL-----ESVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSS 193
             N+ DLDA VDMLT L     ES EN+ D  +I    E  SSSEC+  K   V GE+++
Sbjct: 121 LANNQDLDATVDMLTQLEFDTIESSENLPDTLDIGDVSESGSSSECAAMKLKTVVGEATA 180

[Close]

BLAST of Spo20759.1 vs. UniProtKB/TrEMBL
Match: V4WBQ8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009480mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 72/185 (38.92%), Postives = 94/185 (50.81%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKD-------------------HKG------SKTLPVK 99
           M+   S+LNP+AASYVP+SKRE  D                   H G       K     
Sbjct: 1   MRPGVSSLNPYAASYVPLSKREAYDRTEPITKDFKRSNENVWYAHPGHVTQYHGKVSCDS 60

Query: 100 AAVLVNDLPAKDDYKLKIS--FEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVY 159
           +A     LP  +   +K       +  +  + +DEE EMDL YLQM FPG+S+QS+ DVY
Sbjct: 61  SAQSAQKLPNPEGSTVKSQPLHGSYSSSSKQMMDEEFEMDLEYLQMSFPGLSNQSLTDVY 120

Query: 160 NVNSGDLDAAVDMLTHL-----ESVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSS 193
             N+ DLDA VDMLT L     ES EN+ D  +I    E  SSSEC+  K   V GE+++
Sbjct: 121 LANNQDLDATVDMLTQLEFDTIESSENLPDTLDIGDVSESGSSSECAAMKLKTVVGEATA 180

[Close]

BLAST of Spo20759.1 vs. UniProtKB/TrEMBL
Match: V4TTD2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009480mg PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.000e-17
Identity = 75/198 (37.88%), Postives = 98/198 (49.49%), Query Frame = 1


		  
Query: 27  RLFNFVFYQRLAKMKSSTSTLNPHAASYVPVSKREVKD-------------------HKG 86
           R+F F        M+   S+LNP+AASYVP+SKRE  D                   H G
Sbjct: 12  RIFRFA-------MRPGVSSLNPYAASYVPLSKREAYDRTEPITKDFKRSNENVWYAHPG 71

Query: 87  ------SKTLPVKAAVLVNDLPAKDDYKLKIS--FEKFQETDSKFIDEESEMDLAYLQMM 146
                  K     +A     LP  +   +K       +  +  + +DEE EMDL YLQM 
Sbjct: 72  HVTQYHGKVSCDSSAQSAQKLPNPEGSTVKSQPLHGSYSSSSKQMMDEEFEMDLEYLQMS 131

Query: 147 FPGVSDQSVADVYNVNSGDLDAAVDMLTHL-----ESVENVQDGFNIEQFEEPVSSSECS 193
           FPG+S+QS+ DVY  N+ DLDA VDMLT L     ES EN+ D  +I    E  SSSEC+
Sbjct: 132 FPGLSNQSLTDVYLANNQDLDATVDMLTQLEFDTIESSENLPDTLDIGDVSESGSSSECA 191

[Close]

BLAST of Spo20759.1 vs. ExPASy Swiss-Prot
Match: CID5_ARATH (Polyadenylate-binding protein-interacting protein 5 OS=Arabidopsis thaliana GN=CID5 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.700e-12
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKDHKGSK---TLPVKAAVLVNDLPAKDDYKLKISFEK 99
           MK     LNPHAASYVP+SKR   D+ G         K+  +   +P K     ++++++
Sbjct: 1   MKPGAFALNPHAASYVPISKRV--DYGGGDDGLVFAAKSPTVEVSMPKKSS---EMAYKQ 60

Query: 100 FQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHL-----ES 159
            ++ D   ++ + +MD+ YL + F G+S +S+ DVY  N GDL+A ++ML  L     ES
Sbjct: 61  IRDDDLD-LEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLEATIEMLNQLEIYSTES 120

Query: 160 VENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSS 188
            EN+ +  +I      +S S  S +K+  VA  +SS
Sbjct: 121 EENLPETLDIGD----ISESGPSTSKSTEVAASTSS 146

[Close]

BLAST of Spo20759.1 vs. ExPASy Swiss-Prot
Match: CID6_ARATH (Polyadenylate-binding protein-interacting protein 6 OS=Arabidopsis thaliana GN=CID6 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.500e-8
Identity = 53/169 (31.36%), Postives = 77/169 (45.56%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKRE--------------VKDHKGSKTLPVKAAVLVNDLPAK 99
           MKS +STLNP+AA+YVP+SKRE               + H   +         +      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGT 60

Query: 100 DDYKLKISFEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDM 159
                K   E       K  D E +MD+ YL   +PG+S +S+ DVY  N+ DLDA ++M
Sbjct: 61  QMSPKKSPSEMVYNHQLKDEDLEMDMDIEYLLATYPGLSQESINDVYLANTCDLDATIEM 120

Query: 160 LTHL-----ESVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSSSA 190
           L  L     E+ E + D  +I    E ++ S    +K  N    +SSS+
Sbjct: 121 LNQLEIYSTEAEEYLPDTLDIGDVPEIITES----SKQKNDGSSASSSS 165

[Close]

BLAST of Spo20759.1 vs. TAIR (Arabidopsis)
Match: AT5G11440.1 (CTC-interacting domain 5)

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-13
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKREVKDHKGSK---TLPVKAAVLVNDLPAKDDYKLKISFEK 99
           MK     LNPHAASYVP+SKR   D+ G         K+  +   +P K     ++++++
Sbjct: 1   MKPGAFALNPHAASYVPISKRV--DYGGGDDGLVFAAKSPTVEVSMPKKSS---EMAYKQ 60

Query: 100 FQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDMLTHL-----ES 159
            ++ D   ++ + +MD+ YL + F G+S +S+ DVY  N GDL+A ++ML  L     ES
Sbjct: 61  IRDDDLD-LEMDIDMDIEYLLVTFSGLSQESITDVYLANGGDLEATIEMLNQLEIYSTES 120

Query: 160 VENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSS 188
            EN+ +  +I      +S S  S +K+  VA  +SS
Sbjct: 121 EENLPETLDIGD----ISESGPSTSKSTEVAASTSS 146

[Close]

BLAST of Spo20759.1 vs. TAIR (Arabidopsis)
Match: AT5G25540.1 (CTC-interacting domain 6)

HSP 1 Score: 60.5 bits (145), Expect = 1.400e-9
Identity = 53/169 (31.36%), Postives = 77/169 (45.56%), Query Frame = 1


		  
Query: 40  MKSSTSTLNPHAASYVPVSKRE--------------VKDHKGSKTLPVKAAVLVNDLPAK 99
           MKS +STLNP+AA+YVP+SKRE               + H   +         +      
Sbjct: 1   MKSGSSTLNPYAAAYVPLSKREGSLVDTKPVTQQHMQQQHHQQQPYYGYGVQGMGSYQGT 60

Query: 100 DDYKLKISFEKFQETDSKFIDEESEMDLAYLQMMFPGVSDQSVADVYNVNSGDLDAAVDM 159
                K   E       K  D E +MD+ YL   +PG+S +S+ DVY  N+ DLDA ++M
Sbjct: 61  QMSPKKSPSEMVYNHQLKDEDLEMDMDIEYLLATYPGLSQESINDVYLANTCDLDATIEM 120

Query: 160 LTHL-----ESVENVQDGFNIEQFEEPVSSSECSLAKAVNVAGESSSSA 190
           L  L     E+ E + D  +I    E ++ S    +K  N    +SSS+
Sbjct: 121 LNQLEIYSTEAEEYLPDTLDIGDVPEIITES----SKQKNDGSSASSSS 165

The following BLAST results are available for this feature:

BLAST of Spo20759.1 vs. NCBI nr
BLAST of Spo20759.1 vs. UniProtKB/TrEMBL
BLAST of Spo20759.1 vs. ExPASy Swiss-Prot
BLAST of Spo20759.1 vs. TAIR (Arabidopsis)

BLAST of Spo20759.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902174025\|gb\|KNA08346.1\|	1.0e-78	100.	hypothetical protein SOVF_1634...	[more]
gi\|731320367\|ref\|XP_010670768.1\|	6.8e-43	64.8	PREDICTED: polyadenylate-bindi...	[more]
gi\|502124677\|ref\|XP_004498625.1\|	2.4e-19	39.2	PREDICTED: polyadenylate-bindi...	[more]
gi\|567917126\|ref\|XP_006450569.1\|	2.2e-17	38.9	hypothetical protein CICLE_v10...	[more]
gi\|567917124\|ref\|XP_006450568.1\|	2.9e-17	37.8	hypothetical protein CICLE_v10...	[more]

BLAST of Spo20759.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QP52_SPIOL	7.0e-79	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CY83_BETVU	4.8e-43	64.8	Uncharacterized protein OS=Bet...	[more]
A0A067GIU8_CITSI	1.5e-17	38.9	Uncharacterized protein OS=Cit...	[more]
V4WBQ8_9ROSI	1.5e-17	38.9	Uncharacterized protein OS=Cit...	[more]
V4TTD2_9ROSI	2.0e-17	37.8	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo20759.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
CID5_ARATH	3.7e-12	33.9	Polyadenylate-binding protein-...	[more]
CID6_ARATH	2.5e-8	31.3	Polyadenylate-binding protein-...	[more]

BLAST of Spo20759.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G11440.1	2.1e-13	33.9	CTC-interacting domain 5	[more]
AT5G25540.1	1.4e-9	31.3	CTC-interacting domain 6	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003892	Ubiquitin system component Cue	PROFILE	PS51140	CUE	coord: 108..151 score: 11
None	No IPR available	GENE3D	1.10.8.10		coord: 110..146 score: 5.
None	No IPR available	PANTHER	PTHR37252	FAMILY NOT NAMED	coord: 41..198 score: 8.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046856	phosphatidylinositol dephosphorylation
biological_process	GO:0019752	carboxylic acid metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0046470	phosphatidylcholine metabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0071705	nitrogen compound transport
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0009987	cellular process
biological_process	GO:0006580	ethanolamine metabolic process
biological_process	GO:0031323	regulation of cellular metabolic process
biological_process	GO:0006821	chloride transport
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0000045	autophagosome assembly
biological_process	GO:0000422	autophagy of mitochondrion
biological_process	GO:0016049	cell growth
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006623	protein targeting to vacuole
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0009536	plastid
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005634	nucleus
cellular_component	GO:0000153	cytoplasmic ubiquitin ligase complex
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0004630	phospholipase D activity
molecular_function	GO:0070290	N-acylphosphatidylethanolamine-specific phospholipase D activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0016831	carboxy-lyase activity
molecular_function	GO:0019776	Atg8 ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0005488	binding
molecular_function	GO:0005247	voltage-gated chloride channel activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04742	0.72	Barchart \| Table
Spo22159	0.71	Barchart \| Table
Spo13026	0.69	Barchart \| Table
Spo06852	0.69	Barchart \| Table
Spo21597	0.69	Barchart \| Table
Spo17865	0.69	Barchart \| Table
Spo24521	0.68	Barchart \| Table
Spo11972	0.68	Barchart \| Table
Spo16217	0.68	Barchart \| Table
Spo14897	0.67	Barchart \| Table
Spo06240	0.67	Barchart \| Table
Spo23271	0.67	Barchart \| Table
Spo17011	0.67	Barchart \| Table
Spo12754	0.66	Barchart \| Table
Spo04392	0.66	Barchart \| Table
Spo10449	0.66	Barchart \| Table
Spo09305	0.65	Barchart \| Table