Spo20812 (gene) | SpinachBase

Overview


Name	Spo20812
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	GTP-binding protein hflx, putative
Location	SpoScf_00488 : 118614 .. 127166 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAACCTTTAAACTTTCAGCAAGCAAATTGAAGAAACTCAACAAGTAACAGTATATATTCATCAGAAATTCCAGAAACTCACAAATGAATAATAATCAAGCATGACAAACAAGAATCAATTAGTACAAGGAGGGATCTCCCTCATACGATCACAACTCAATCGTCTTCATCTCCTTCAATCCCGCCATTACTTCTCTCAATTTTCTCTGTCTTCCTCTCCAATACCTTCTTCAAACCCATCACTCAAAACCCCATTTTCTCCCTTCTCTCACACACCCTCGTTGTACAGAAACTCAATTGAAGAAGACCCAAATCGAGGCTCAGAAACCCCGCCGAAGCTTCTGGTGGTTCAGCCACGTGTTCGACAAAATGCCAATCTACAGGCTAAGCTCAACGAGGCACTTAACCTAGCTAATTCACTCGATGAACAAAGAGATGGTTGCTTTTCTACTGATTTGAGTCTGAAAAAATCGCCCCCTCATGTTGTTGTTCAGAACCCACTTTCTAGTTACGGCAAGGGCCGCTCAGGTTGCTTCTTGCTCTTTTTTGTTTGCTTCAATTTCGTTAAGTTTGCTTTCATTTTTAAGGTTTTGAATCATCGAGGGAAGAGTTTGTGACAAAATCATGTGTAGGTCAATATAACATAATGTTTCTTCATTTTGATTAAGGAGTTGGGTTTTAAATGGGGTTGGGTTGTATTTGAGTTATGCAATGGAGTTGAACTTGTTAAGAAGTTGTAATTTGATGTTTGACTAGTGCAATGTAATTGAAATTGGTAACAAGGTCATGTAGGTTTTGGCACTTTTATCAAAGAGCTTCTAGTATTCTAGTCCTAGTTTGGTTGATATTCTAATGCATGGGAGGTTTCATTTCCTAGGAAGGGTCGCTCAGGTTGCGTCTTGCTCTTTTTTGTTTGCTTCATTTTCGTTAAGTTTGCTTTCATTTTATGGTTTTGATATACGCACCTCTAAGGGCTAACTATAAGCATTAAATAATCATCCTACGAAGATTTTTATGACAAAATCACGTCTAGGTCATTATAACATCATGTTATTTCATTTTGATTAAGGGGTTGGGTTGTTATTTGAGTTATGCTATGGAGTTGAACTTGTTTTTTTTTTACGCAGAAATAGGGAAATTATATTATTAGGAGGTTACCATGACCTCAATAAAGATGTAGAGTATCTTACATATAGTAGCAAAAACAGCTAATGGCCAGAACAAAAACCAGTAAGCATAGCCATAGCTGAGCAAAAGATTGAACCTAAAAAGTTTTAGATTATACAATACCAAAAGAGGTGAAGTTAGAGCAGTTAGCATTATAGACAATGTACTTCATCCTGTCAAACGAACACTTGATGTAGCTAGGCGTCATTCTGATGCACGAACATTAGGTGGAGGTTGGAAGTGATAAGCTTTGGGAATGTTCATTTTTCGACCAATATCAGCTAACCCATGAGCAACCTTGAGGTTAGCATCCCTTTTGACATGGAGGATGGTGACAGCCCAATTCCTCTTTAGAAGAGAGACGATATCAGTGATGATAGGAGCCCGTTGATGATCTTTGTAACCTCTAGGATTCTCGAACATGTATTTCAAAGCTTGAGCATCAATCTTCAGTTCAAGGTGAGTAATCTTCCTTTCCCAAGCAATCAATAAACCTTCTTTGATTGCGGTGTGTTCCGCTGAAGCAGGGCCAACACTGTTGAAATGAATGGAGAAGCCAATATGCCAAACCCCCTTATCACATCTGAGAACTCCTCCTCCAGCATTATTAATGTCCAACCAAGATCCATCCGTATTGAGTTTAAAATAGGAGGTTTGGGGAGGAGCCCAAATCCTTGCTGAATGAGAGGTGCTTGGCCTAGGAACAGAATTAACACAGTGCACAATGTTGTTAGTGAAAGTGTAGTATGCCCATAACTTGTTGTAGAAACTTGCACTATTTTCCGTTTTAAGATTGAAAACAACATTTTTTCTGTAGGACAAAATATGCCATATTGTTACTGAAAAAATGATTTGCCAAGTTGTTGAATATTTGAAATTGTAAGACACCCAATCATGCCATTTTAAGGGGAAAAAAGAGGGTTCTTCGTGATGAGTTTGTAGATAGAGTTGCAAAGGCCAATGGGTCTGAACTTTTTCATACAAGAAGGAATATCATCTGTAGGAATAAGACAAAGGTAAGAGTTGTTAATATTCTGAGGGATAGAACTAGAGGCAAAACAGTGTTGAATGAAGCTAGTAATAGACTGGTCTAATTCTTTCCAAAACTTTTGGAGAAAAAGAGGTATCAGGTCCAGGACTTTTAATAGGGTTCATTTGAACAAAATGTTTTTAATTTCACTATTGAGGAACTCAGCATCAACATCAATAATGTGGTTGAAAACGCCAGGGACATTACTTCTAAGGCTAGAGGAGTGGTTGTAGTGAAGACATTAATAAAGTACTGTCTTGCCATAGACTTTAGAGCATCCTGGTCATGCACCCAAACATCAACATCATCTTTTAAACACAAGATTTTGCTTCTAGATTTTTTGACTTTTCCAATAGTGTGAAAGTATTTAGTGTTCTAATCATCAAATTTTCTCCAATTTACCCCTGCCTTTTGAGCCCAAGTAACTCTTTCCATTTGGTAAATGTTATTCAACTTAGAAAGCAATTGTTTTTCAAGATCAAAAAGGAAAGGAGAAAAATTTCTTGACAGGCTAGTTGAATACCATCAATTCTACGCAGAAGTTTTTTCTTTTTTAGGGTGAGGTTACCAAAGATATTTTTATTCCAAGCATGCACAGTTGAAAGAAAGTTACAACGGCCATTTAAAAAATGCATATTGTTGACTTTCCAATTATCCACAAAAAAACTGGCAAAGAAGGATGAAAAAGCCAAACTTCTTTACAACGAAAAGGAGAAGGACCAGGTAAAGTAAAGAGAAAGAGCAGAGGACAATGATTTGAGTATGTTTTAGGTAAATGTAATACCTAAGTCACTAACTGTTCGAAAAGGTGTTCACCCAACTTGGGTTTGCCAATGCTAGGTGTTCACGAATCAGCTCCAAACCTTTCGGGCATTGGTCCAAGTATAAGGGTTACTTGAAAACCCAAATCCACCAAAGAGGCAGCATCCACAAGCATGTTCAAATCAGCACATTGGTTGTTGACTTGTTGTCAAACCTTCTACCCCCAGATTTCTCAGATTGTTTAGTAACTTCATATAGAGCAACTTCGATGGTAGAAAAAGGGACCTGCTCACGAAAAAAAAGAACATGTGAGTAGGTAGCCCACCATTGGTACAACAATGACATCAACAACTATTAAAACCATAGCTCAAAAAAAGAAAGGGGAAAAAGTTGAATTAACCGTGACTCACACGTGAAACACAACACAAAAGGATATTGGTACGTGGAACTCTGTTAAGCTATATTAGGAATATTAATATTATGTTAATATTAGGATTGCCATAATATTAGTATCCTAATATTAGGATTAACATAATAGTAGTATATTATCTTAAAATTAGGATTACCATATTATTAGTAGTATTATCTTAATATATCTAAGAATAGTTAGGTTGAAAATAGTTAGGAATTGTAATATATATATTCATTAATTTAATAAGAAGAGTAGTGGCTCTTTGCGTCATATTTGTCATGGTATCAAGAGCAAGGTAAGATTTTTTTTTTCCTCCGCAAATTTGAGGAGAGAAATACGGTGAGTTTTGAGATCGTGTAATGGCGAAGGATGATGAGGAAACTCCGCCACCGAAGGATGAACTCGCAAAGGAATACTATCTAGGATCATCTGATGGTCCAGGAAATATAATTACACCAATTAAACTTAGAGGCTCCAAGAACTACGATGAGTGGTCTACATCGGTTCGTAGAGCTTTGATTTCGAAGAGAAAATTTGGCTTCATTGATGGAACAATCAAAGAACCAACAACAGACCCGGACAGACTTGCAGATTGGATTGCTGTCCAATCTATGTTGGTATCATGGATCACACACACGTTGGAGGAATCGTTGAGATCAAATGTAGGAGATTATGATAATGCCGGAACTTTGTGGCACACGTGTCTGCAAATTAAAAACAAGCCTCGGTGAATGCAAGCAGGGAGGTAATGAGACAGTAGCTGAGTATTATGGCAGGCTGTCAATTATCATGAAGGAACTTGTGAATTATGCAAGGGTACCTAAGTGTGATTGTGGAGGCTGCACGTGTGGTATTGCAGCGCAGGTAGCGGAGATTAGAGAAGAGGATCATCTACATTATTTTTTGATTGGGCTTGACAAACCTTACGAAGCCATCCGAGCCCAATTACTAGGACAGACGCCTCTACCTTCGATAGATGAAGCATACCAATCAGTGACTAATACTGAGGATTTACGAATAAAGGAAGGCCATCAACGTGAGGGTAACATTATGGCTTTCAAGACTGAGGTACGAGGTAAGTCGGGTTATCGAGATCATGCCACTAGATTTTGTAACCATTGCAATAGGGAAGGCCATGAGGATGAGACGTGCTACCAGCTAGTTGGCTTTCCTGGTGGGATGATAGGAGAAAAGGAGGACGAGGCTCTGGCCGTAACAATAATAGTAGAGGGGGTCGTGGGGGCCGAGGTCGCGTAGGAGGCAATGGTGTCACAGGGCCAAGTAATCAAGGGGCAGTAGGTGGTGTGCGAGCTAACAAACTCACAAGCCAGGCACATCAAACTTCTTTGGATGCTTCTGGGATGACTGATGGGCTAGCAGGAGTATCCTCCACTCAAGTCCAGCAGATTATTGACCTGTTGACATCAAAAACCAATACGAAATTGCAAGGTATATGCGATAATAATTTATTATGGATCGTTGATACGGGAGCATCAAATCATGTTACAAACGACCTCTCAATATTGATGAATGTGCGGACGATCCAAAATTGCCCTGTAGGCCTCCCAGATGGACAATTCACTAACTCGAATCAAATTGGTTCGGTGGAATTGAATGGATGGATTAATACTTGATAATGTGTTATTTGTACCTACTTTAAATCGCAATTTAATTTCTGTGACGCAATTGAGTGATGAATCAAATTGTGTGATTCAATTTACTAACAAGATATGTGTTATACAGGACCGGTTGACGAGGAAGATGATTGGCCTGGGTGAACGAACGGATGGACTTTATTTTTTCCGTGGAACTCCGTTGGTCAAGGTGTGTGCGGTTGAGACAGAATGTGTGGTCGAACTGTGGCATCAACGAATGGGGCATCCATCGGAAAGAATTGTGAAGCTTCTTCCTCCTGTGAGTAATGCTGTTAGGAGAAATAATAATGTATGCGATGTTTGTCCTCGTGCTAAGCATACTAGGAGTCCTTTTCCTGTTAGTGAAAATAAAGCTGGTGAAATGTTTGAATTGATACATTTAGATTTGTGGGGGCCCTATAAGACACATTCGTCTTGTGGTGCTCGATATTTTTTAACTATTGTAGATGATTTTTCTAGAGGAGTATGGATTTATTTGCTTCGTAATAAAACTGAGGTTGAAGACGTGTTTATGAATTTTGTTGCAATGACTAAACGTCAATTTAATCAAGATATTAAGGTGATACGAAGTGATAATGGTACTGAATTTAATTGCATGCAAGGTTATTTTTTTAAAAGTGGAATTTGGTTTGAATCATCATGTGTTGGGACTCCCCAACAGAATGGTAGGGTAGAGCGGAAACACTAACATTTATTAAATGTGGCACGGGCATTACGTTTTCAGGCTAAGTTACCAAAGAAATTTTGGGGGGAATGTATTTCAGCGGCATGTTATTTGATAAATAGAACGCCAACTCCTTTGCTCAATAATAAAACACCATATGAAATGTTGTTTGGTAAAATTCCGTCGTATGAGTTGATTCGTGTTTTTGGATGTCTTTGTTATGCATATAATCAACGGAGTAAAGGGAACAAATTTGATTCTCGGGGTAGAAAATGTATTCTTCTTGGATATCCGTTTGGCAAGAAAGGGTGACAATTGTTTGATTTAGAAACACGAGAATTCTTTGTGTCGCGTGATGTTAAGTTTCATGAGAAGGTTTTCCCTTATACTGAGGGTATGGCAGATGATGTTGTCGGAGTATTTGCTAATGAGGAACATGTGGTAGTTTATGGGAGTGATGATGAGGCAGAATGTGTTAATAGTCGCAATGTCAGGCAACCTTTAAGGCCTAGTAGTAGTGAGGCAGTAGGAATAAGCCATAATGCACGAAACACAGGGGCATCAAGTGTGCCAGTAGATGCGAGTGATGGAGAAGTATTGCAGGAGGAGTTAGACGAGGTGTCGCATGAAGCGCACGCCGAAGTGCAGCAAGAGGCGCAGATCACAACACCTGCTTCGAACCAGACAACAGCTATTGGGCAAATGAGCAGCAATAGTGCAGGAAATATTATGTCTGGCAGTACGACGGTAGGCTCGGAAAGTGAGGAGGAGTTGGGGCGAGGGAAGAGACAAAAATACCCTTCCTTCAAACTTCGAGATTGTGTGATGCATACTATACGGAAAAATAAAGTTCCATCGGAAAGTTCATCCTTGACATCATCCTCCTCAGTTACTCCCTATCCTATAACATATTTTGTTAATTATGAAAGATTTTCTGCGAAACATAGAAATTTTATTGCAGCTATTACAGAGGGAAAAGCCCCAAAATCTTTTAAAGAGGCAATGAAACACAAAGCGTGGAGAGAGGCTATGGGTGCAGAAATAGACGCACTTGAAGGGCAGGGGACATGGGTCCTAGAAAAATTACCTCCAGGAAAGAAAGCACTAGGGAGCAAGTGGGTGTATACGGAGAAAAGAGATGAGGATGGAAATTTGATCCGGAACAAGGCACGATTGGTGTGCTTAGGCAATCATCAGATAGAAGGTACAGATTATAATGAAACTTTTGCTCCAGTTGCTAAAATGTCAACAGTGCGAACTTTCTTGGCTGTTGCAGCAGTGAAAAACTTGGAAGTGCATCAAATGGATGTACATAATGCTTTCTTACATGGTGATTTAGAGGAGGAAATCTATATGAAAATTCCACCTGGGTTTCATAAAGATAATACTGACATGGTTTGCAGAATGAAAAAATCTTTGTATGGATTGAAACAGGCACCCCGGTGTTGGTTTGAAAAGTTGTCCATTGCTTTGAACAAGTATGGGTTTAAACAGTCATATTCAGATTACTCGCTATTCACCCTTTCGAAAGGAGAGTTACAGTTGAGCGTTCTAGTATATGTTGGTGACATGATTATTGCCGGAAACAATGTATTTTTTATGTCCGTAAGCGAAAATATGCTCTAGATATTATTTCAGAAACAGGTCTACTAGGTGCAAAACCCTCAGATTTTCCAATAGAACAAAATCATAAGCTAGCACTTGCAGAAGGAAAGGAACTGGAAGATGTAGAGAAATACAGACGTCTCGTAGGCCGTCTAATTTACTTGGCCGTGACTAGGCCAGATTTGGCATATTCTGTGCACATTTTATCGCAGTTTATGCAGACACCAAAGGAAAAACATTGGGAGGCAGCATTAAGAGTAGCACGATACTTAAAGAAGTGCCCTGGTCAAGGCATTCTTTTACGTTCTGATAGTGCTTTGCGACTAGAGGGATGGTGTGACTCGGATTGGGCTAGTTGTCCTTTGACTCGTCGCTCATTAACTGGATGGTTTGTATTACTCGGTCTTTCTCCGATTTCCTGGAAGACTAAGAAACAATATACAGTATCGCGCTCATCAGCAGAAGCAGAGTGTCGTTCGATGGCAGCATTGACATGTGAGTTAAAGTGGTTAAAGCAACTACTTAGAGATTTGGGCGTGGAGCACAAGCAAGGTATGCGTGTGTTTTGTGATAGTCAGTCAGCACTTCACATTGCACATAATCCAGTTTTTCATGAAAGGACTAAACATATTGAGGCAGATTGTCATTTCATACGAGATGCAATCAAGGAAGGTGTTATTTGTCCTTCGTATGTGTCAACGAAGGTGCAATTAGCAGATATTTTTACAAAGGCGTTAGGAAAAGTGCAATTTGAATTTTTTCTTGACAAAATGGGCATTCGAGATCTACATGCTCCACCTTGAGGGGGATGTTAAGCTATATTAGGAATATTAATATTATGTTAATATTAGGATTGCCATAATATTAGTATCCTAATATTAGGATTAACATAATAGTAGTATATTATCTTAAAATTAGGATTACCATATTATTAGTAGTATTATCTTAATATATCTAAGAATAGTTAGGTTAAAAATAGTTAGGAATTGTAATATATATATTCATTAATTTAATAAGAAGAGTAGTGGCTCTTTGCGTCATATTTGTCAAACTCAGGCGTCATTTTCGTTTTTTTAACGTGGTCCCTCCACTTTATGGGAATTAAACAAATTATAGTAGTATTTGCATAGTAAAACAGAGTACAGTAGCATGTTGTACTATATTTTGTCCGCTAGCATTTAACTTTAGGAGATTGCTTCTCCTCCTTTTACACCAAAACATTAGATAGTACTATACTTTTACTTTTACAGAGTCCTAG

mRNA sequence

TAAACCTTTAAACTTTCAGCAAGCAAATTGAAGAAACTCAACAAGTAACAGTATATATTCATCAGAAATTCCAGAAACTCACAAATGAATAATAATCAAGCATGACAAACAAGAATCAATTAGTACAAGGAGGGATCTCCCTCATACGATCACAACTCAATCGTCTTCATCTCCTTCAATCCCGCCATTACTTCTCTCAATTTTCTCTGTCTTCCTCTCCAATACCTTCTTCAAACCCATCACTCAAAACCCCATTTTCTCCCTTCTCTCACACACCCTCGTTGTACAGAAACTCAATTGAAGAAGACCCAAATCGAGGCTCAGAAACCCCGCCGAAGCTTCTGGTGGTTCAGCCACGTGTTCGACAAAATGCCAATCTACAGGCTAAGCTCAACGAGGCACTTAACCTAGCTAATTCACTCGATGAACAAAGAGATGGTTGCTTTTCTACTGATTTGAGTCTGAAAAAATCGCCCCCTCATGTTGTTGTTCAGAACCCACTTTCTAGTTACGGCAAGGGCCGCTCAGAGTCCTAG

Coding sequence (CDS)

ATGACAAACAAGAATCAATTAGTACAAGGAGGGATCTCCCTCATACGATCACAACTCAATCGTCTTCATCTCCTTCAATCCCGCCATTACTTCTCTCAATTTTCTCTGTCTTCCTCTCCAATACCTTCTTCAAACCCATCACTCAAAACCCCATTTTCTCCCTTCTCTCACACACCCTCGTTGTACAGAAACTCAATTGAAGAAGACCCAAATCGAGGCTCAGAAACCCCGCCGAAGCTTCTGGTGGTTCAGCCACGTGTTCGACAAAATGCCAATCTACAGGCTAAGCTCAACGAGGCACTTAACCTAGCTAATTCACTCGATGAACAAAGAGATGGTTGCTTTTCTACTGATTTGAGTCTGAAAAAATCGCCCCCTCATGTTGTTGTTCAGAACCCACTTTCTAGTTACGGCAAGGGCCGCTCAGAGTCCTAG

Protein sequence

MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPSLYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLSLKKSPPHVVVQNPLSSYGKGRSES

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20812.1	Spo20812.1	mRNA

Homology

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BLAST of Spo20812.1 vs. NCBI nr
Match: gi|902238602|gb|KNA25248.1| (hypothetical protein SOVF_008280 [Spinacia oleracea])

HSP 1 Score: 278.5 bits (711), Expect = 6.700e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


		  
Query: 1   MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPS 60
           MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPS
Sbjct: 1   MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPS 60

Query: 61  LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLS 120
           LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLS
Sbjct: 61  LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLS 120

Query: 121 LKKSPPHVVVQNPLSSYGKGRS 143
           LKKSPPHVVVQNPLSSYGKGRS
Sbjct: 121 LKKSPPHVVVQNPLSSYGKGRS 142

[Close]

BLAST of Spo20812.1 vs. NCBI nr
Match: gi|731337257|ref|XP_010679687.1| (PREDICTED: GTP-binding protein At3g49725, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 140.2 bits (352), Expect = 2.800e-30
Identity = 82/144 (56.94%), Postives = 91/144 (63.19%), Query Frame = 1


		  
Query: 1   MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPS 60
           M N ++L   G SL   QL  LHLLQS                           FSHTPS
Sbjct: 1   MMNNSKLALRGFSLSLLQLRSLHLLQSH------------------------CCFSHTPS 60

Query: 61  LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLS 120
           L RNS E+DPN   + PPK+LVVQPRVR N +LQ KLNEALNLANSLDEQRDG FSTDLS
Sbjct: 61  LRRNSNEDDPNLDPQGPPKILVVQPRVRPNTHLQTKLNEALNLANSLDEQRDGFFSTDLS 120

Query: 121 LKKSPPHVVVQNPLSSYGKGRSES 145
           LK SPPH+VVQNPLS   K RS++
Sbjct: 121 LKNSPPHLVVQNPLSGSNKSRSDT 120

[Close]

BLAST of Spo20812.1 vs. NCBI nr
Match: gi|870858369|gb|KMT09887.1| (hypothetical protein BVRB_6g128610 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 138.7 bits (348), Expect = 8.200e-30
Identity = 81/142 (57.04%), Postives = 90/142 (63.38%), Query Frame = 1


		  
Query: 3   NKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPSLY 62
           N ++L   G SL   QL  LHLLQS                           FSHTPSL 
Sbjct: 2   NNSKLALRGFSLSLLQLRSLHLLQSH------------------------CCFSHTPSLR 61

Query: 63  RNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLSLK 122
           RNS E+DPN   + PPK+LVVQPRVR N +LQ KLNEALNLANSLDEQRDG FSTDLSLK
Sbjct: 62  RNSNEDDPNLDPQGPPKILVVQPRVRPNTHLQTKLNEALNLANSLDEQRDGFFSTDLSLK 119

Query: 123 KSPPHVVVQNPLSSYGKGRSES 145
            SPPH+VVQNPLS   K RS++
Sbjct: 122 NSPPHLVVQNPLSGSNKSRSDT 119

[Close]

BLAST of Spo20812.1 vs. NCBI nr
Match: gi|296084742|emb|CBI25886.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 93.6 bits (231), Expect = 3.000e-16
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 1


		  
Query: 25  LQSRHYFSQFSLSSSPIPSSNPSLKTP-----FSPFSHTPSLYRNSIEEDP-------NR 84
           L  + Y S   L ++P  S  P+L+ P      S FS TP L +   +EDP       NR
Sbjct: 27  LYLKPYHSPLKLPTNP-SSIPPNLQFPPISILSSSFSQTPLLQK---KEDPYNDASLFNR 86

Query: 85  GSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLSLKKSPPHVVVQN 144
             ++PPKL VVQPR+R +  LQAKL+EA+NLANSL+EQRDG + T+L  K  PPHVVVQN
Sbjct: 87  DPKSPPKLFVVQPRLRPDTLLQAKLDEAINLANSLEEQRDGYYDTELCEKGLPPHVVVQN 146

[Close]

BLAST of Spo20812.1 vs. NCBI nr
Match: gi|731438550|ref|XP_010647314.1| (PREDICTED: GTP-binding protein At3g49725, chloroplastic isoform X2 [Vitis vinifera])

HSP 1 Score: 93.6 bits (231), Expect = 3.000e-16
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 1


		  
Query: 25  LQSRHYFSQFSLSSSPIPSSNPSLKTP-----FSPFSHTPSLYRNSIEEDP-------NR 84
           L  + Y S   L ++P  S  P+L+ P      S FS TP L +   +EDP       NR
Sbjct: 27  LYLKPYHSPLKLPTNP-SSIPPNLQFPPISILSSSFSQTPLLQK---KEDPYNDASLFNR 86

Query: 85  GSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLSLKKSPPHVVVQN 144
             ++PPKL VVQPR+R +  LQAKL+EA+NLANSL+EQRDG + T+L  K  PPHVVVQN
Sbjct: 87  DPKSPPKLFVVQPRLRPDTLLQAKLDEAINLANSLEEQRDGYYDTELCEKGLPPHVVVQN 146

[Close]

BLAST of Spo20812.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0J7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_008280 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.600e-72
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


		  
Query: 1   MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPS 60
           MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPS
Sbjct: 1   MTNKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPS 60

Query: 61  LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLS 120
           LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLS
Sbjct: 61  LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLS 120

Query: 121 LKKSPPHVVVQNPLSSYGKGRS 143
           LKKSPPHVVVQNPLSSYGKGRS
Sbjct: 121 LKKSPPHVVVQNPLSSYGKGRS 142

[Close]

BLAST of Spo20812.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8G1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g128610 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.700e-30
Identity = 81/142 (57.04%), Postives = 90/142 (63.38%), Query Frame = 1


		  
Query: 3   NKNQLVQGGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPSLY 62
           N ++L   G SL   QL  LHLLQS                           FSHTPSL 
Sbjct: 2   NNSKLALRGFSLSLLQLRSLHLLQSH------------------------CCFSHTPSLR 61

Query: 63  RNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLSLK 122
           RNS E+DPN   + PPK+LVVQPRVR N +LQ KLNEALNLANSLDEQRDG FSTDLSLK
Sbjct: 62  RNSNEDDPNLDPQGPPKILVVQPRVRPNTHLQTKLNEALNLANSLDEQRDGFFSTDLSLK 119

Query: 123 KSPPHVVVQNPLSSYGKGRSES 145
            SPPH+VVQNPLS   K RS++
Sbjct: 122 NSPPHLVVQNPLSGSNKSRSDT 119

[Close]

BLAST of Spo20812.1 vs. UniProtKB/TrEMBL
Match: F6HD86_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0734g00020 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.100e-16
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 1


		  
Query: 25  LQSRHYFSQFSLSSSPIPSSNPSLKTP-----FSPFSHTPSLYRNSIEEDP-------NR 84
           L  + Y S   L ++P  S  P+L+ P      S FS TP L +   +EDP       NR
Sbjct: 27  LYLKPYHSPLKLPTNP-SSIPPNLQFPPISILSSSFSQTPLLQK---KEDPYNDASLFNR 86

Query: 85  GSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLSLKKSPPHVVVQN 144
             ++PPKL VVQPR+R +  LQAKL+EA+NLANSL+EQRDG + T+L  K  PPHVVVQN
Sbjct: 87  DPKSPPKLFVVQPRLRPDTLLQAKLDEAINLANSLEEQRDGYYDTELCEKGLPPHVVVQN 146

[Close]

BLAST of Spo20812.1 vs. UniProtKB/TrEMBL
Match: A0A022RZY1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003595mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.700e-16
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 1


		  
Query: 10  GGISLIRSQLNRLHLLQSRHYFSQFSLSSSPIPSSNPSLKTPFSPFSHTPSLYRNSIEED 69
           G I  +RS+L+ L+ + +         SSS IPS  P L    + FS++P L R  +  D
Sbjct: 3   GAILHLRSRLSLLNPINTS--------SSSIIPSQFPPLS---AYFSNSPILQRKQLNPD 62

Query: 70  P---NRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFSTDLSLKKSPP 129
               NR  + PP+L VVQPR+R    L+AKL EALNLANSL++QRDG + T+ S K+ PP
Sbjct: 63  NDEFNREPDCPPRLFVVQPRIRPETLLKAKLEEALNLANSLEQQRDGLYHTEFSDKEMPP 118

Query: 130 HVVVQNP 134
           H+VVQNP
Sbjct: 123 HLVVQNP 118

[Close]

BLAST of Spo20812.1 vs. UniProtKB/TrEMBL
Match: M1BXJ7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021428 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.400e-15
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 1


		  
Query: 12  ISLIRSQL-NRLHLLQSRHYFSQFSLSSSPIPSS------NPSLKTPFSPFSHTPS---- 71
           IS +RS L +++ L Q+  +FSQFS+S  P P+       NPS  T  S F    S    
Sbjct: 5   ISHLRSSLTSKICLPQALRHFSQFSISLLPTPTQSIQLPVNPSPSTQLSLFHSLSSPCSS 64

Query: 72  ----LYRNSIEEDPNRGSETPPKLLVVQPRVRQNANLQAKLNEALNLANSLDEQRDGCFS 131
                +++   +D N   ++PP+L VVQPR R ++ L+ KLNEALNLANSL+EQRDG + 
Sbjct: 65  LLLQKHQDGSGDDFNTDPKSPPRLFVVQPRFRPDSVLKPKLNEALNLANSLEEQRDGFYD 124

Query: 132 TDLSLKKSPPHVVVQNPLS 136
           T+   K+ P H+VVQNP S
Sbjct: 125 TEFLDKQMPHHLVVQNPAS 143

[Close]

BLAST of Spo20812.1 vs. ExPASy Swiss-Prot
Match: Y3725_ARATH (GTP-binding protein At3g49725, chloroplastic OS=Arabidopsis thaliana GN=At3g49725 PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-12
Identity = 50/116 (43.10%), Postives = 63/116 (54.31%), Query Frame = 1


		  
Query: 36  LSSSPIPSSNPSLKTPFSPFSHTPSLYRNSIEEDPN-------RGSETPPKLLVVQPRVR 95
           L+   + S  PS  +PFS   HTP       E  P        +   + PKL +VQPR+ 
Sbjct: 59  LARDRLRSKTPS-SSPFSSKRHTPKTSEIEEESTPKDSVLLNPKDPSSAPKLFLVQPRLA 118

Query: 96  QNANLQAKLNEALNLANSLDEQRDGCFSTDLSLKKSPPHVVVQNPLSSYGKGRSES 145
               LQAKLNEAL LANSL+EQR G F +D   K+ P HVVVQNP+    K R ++
Sbjct: 119 PPKYLQAKLNEALCLANSLEEQRYGYFESDFFDKELPSHVVVQNPVRRSSKPRVDT 173

[Close]

BLAST of Spo20812.1 vs. TAIR (Arabidopsis)
Match: AT3G49725.1 (GTP-binding protein, HflX)

HSP 1 Score: 73.9 bits (180), Expect = 8.800e-14
Identity = 50/116 (43.10%), Postives = 63/116 (54.31%), Query Frame = 1


		  
Query: 36  LSSSPIPSSNPSLKTPFSPFSHTPSLYRNSIEEDPN-------RGSETPPKLLVVQPRVR 95
           L+   + S  PS  +PFS   HTP       E  P        +   + PKL +VQPR+ 
Sbjct: 59  LARDRLRSKTPS-SSPFSSKRHTPKTSEIEEESTPKDSVLLNPKDPSSAPKLFLVQPRLA 118

Query: 96  QNANLQAKLNEALNLANSLDEQRDGCFSTDLSLKKSPPHVVVQNPLSSYGKGRSES 145
               LQAKLNEAL LANSL+EQR G F +D   K+ P HVVVQNP+    K R ++
Sbjct: 119 PPKYLQAKLNEALCLANSLEEQRYGYFESDFFDKELPSHVVVQNPVRRSSKPRVDT 173

The following BLAST results are available for this feature:

BLAST of Spo20812.1 vs. NCBI nr
BLAST of Spo20812.1 vs. UniProtKB/TrEMBL
BLAST of Spo20812.1 vs. ExPASy Swiss-Prot
BLAST of Spo20812.1 vs. TAIR (Arabidopsis)

BLAST of Spo20812.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902238602\|gb\|KNA25248.1\|	6.7e-72	100.	hypothetical protein SOVF_0082...	[more]
gi\|731337257\|ref\|XP_010679687.1\|	2.8e-30	56.9	PREDICTED: GTP-binding protein...	[more]
gi\|870858369\|gb\|KMT09887.1\|	8.2e-30	57.0	hypothetical protein BVRB_6g12...	[more]
gi\|296084742\|emb\|CBI25886.3\|	3.0e-16	47.7	unnamed protein product [Vitis...	[more]
gi\|731438550\|ref\|XP_010647314.1\|	3.0e-16	47.7	PREDICTED: GTP-binding protein...	[more]

BLAST of Spo20812.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S0J7_SPIOL	4.6e-72	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C8G1_BETVU	5.7e-30	57.0	Uncharacterized protein OS=Bet...	[more]
F6HD86_VITVI	2.1e-16	47.7	Putative uncharacterized prote...	[more]
A0A022RZY1_ERYGU	4.7e-16	46.4	Uncharacterized protein OS=Ery...	[more]
M1BXJ7_SOLTU	1.4e-15	43.8	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo20812.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
Y3725_ARATH	1.6e-12	43.1	GTP-binding protein At3g49725,...	[more]

BLAST of Spo20812.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G49725.1	8.8e-14	43.1	GTP-binding protein, HflX	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 90..110 scor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0009555	pollen development
biological_process	GO:0007129	synapsis
biological_process	GO:0016444	somatic cell DNA recombination
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0006275	regulation of DNA replication
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0006298	mismatch repair
biological_process	GO:0042138	meiotic DNA double-strand break formation
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006306	DNA methylation
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0048825	cotyledon development
cellular_component	GO:0032300	mismatch repair complex
cellular_component	GO:0000790	nuclear chromatin
molecular_function	GO:0030983	mismatched DNA binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04497	0.71	Barchart \| Table
Spo00685	0.70	Barchart \| Table
Spo23347	0.66	Barchart \| Table
Spo01077	0.65	Barchart \| Table