Spo20823 (gene) | SpinachBase

Overview


Name	Spo20823
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00828 : 17264 .. 18447 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCATACATCCCTTCGAAGCTGATCAGTCAACAGAACTGGATCGTGGTAGGCTCTGTATCACAGGCAAAGTTACCATAGGTACTTCAGTGGCAGCCCTGCTTGTTGTTTAGACAGCTATTTTACTAATCCTAAGATGATATTGGTTCATACGGGTATGACAGCCAAGGGTGCTTCAACGCTTCAAATGCAGAAGGACGCTTTCTCGGGTTTATTTCAAGTAAATGCGCAACAAAGTCTATGAAGCCTTGGTCTCCCATAGGTAGCCGGTGCCTTAGGGATGTCTTTTTAGGAATCAAGTATTCCAGCCTGCTTGTTTCCTGAAAAGGAACACATATCCATCCATATAAGCTAAAGAGAAAGAATTGAGCACAAGTAAAATCACAACCTCTACTTTGATTAACATTTTTTTTTGTTTTAGAAGGTAAGATGAATGACCCTACGGAACTAGTACCTCACATAGGTATTTCCAGCCAGCTTTGCAGGTCAGACTCATTGGAGAAAGTGAGGGGGGATATAAGGGGAATCCTTACCTCCAAAGAGCCCCTTTTGGGGTTTGATCCCATAACCTTAAGGTTAAGAGGTTAAGAGGTCAAGCCTTTGATTAATATATCCAGTAAAGATCAAACAATGTAATAGAAGCTTACAGCCAATCAGATCAAATATCGCAATCGATGGAAATTAATTTTAAACAAATTTGGAAAGGCTAAGAGATTGTTTACTTTGAGATTCTTTTTAAAAAAATAATCTTCCTATCTACCCCTCCCACCTTCCGACCCTTAAATATTGCCCAATTTCCATTTCTGGATGTCCCTTTGGATTTGCCCCAATTCCACAAGAAGGAATGGGGGACTATACTTCACAATTACAAACTTTATTTTTGGTCCCACCAATAAAGTGAACTTGGTGTTATGTTTAGGGGACGAAGGGAGTATGTTTAGGAATGGTCAATTTCTTCCATCATCAGGAAAGGATAATGATAAACAATCTTGGAAACTTTGATATCTTTTAAAAATAAGAAATATAATCTACAGCTAACCCAAAAAGTTCAAGATACTTTCAAAAACCTGCAGGTGTGTCTCAGTTTTGAGAAGTCTCCAACTTCTGAAAATGGAGTTCTGAAAATACAATCAGATTCCAGTGGCAACTACATCTTTGTTATTGTAGGGACAGATAAATAA

mRNA sequence

ATGGCATCATACATCCCTTCGAAGCTGATCAGTCAACAGAACTGGATCGTGCTAACCCAAAAAGTTCAAGATACTTTCAAAAACCTGCAGGTGTGTCTCAGTTTTGAGAAGTCTCCAACTTCTGAAAATGGAGTTCTGAAAATACAATCAGATTCCAGTGGCAACTACATCTTTGTTATTGTAGGGACAGATAAATAA

Coding sequence (CDS)

ATGGCATCATACATCCCTTCGAAGCTGATCAGTCAACAGAACTGGATCGTGCTAACCCAAAAAGTTCAAGATACTTTCAAAAACCTGCAGGTGTGTCTCAGTTTTGAGAAGTCTCCAACTTCTGAAAATGGAGTTCTGAAAATACAATCAGATTCCAGTGGCAACTACATCTTTGTTATTGTAGGGACAGATAAATAA

Protein sequence

MASYIPSKLISQQNWIVLTQKVQDTFKNLQVCLSFEKSPTSENGVLKIQSDSSGNYIFVIVGTDK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20823.1	Spo20823.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo20823.1 vs. NCBI nr
BLAST of Spo20823.1 vs. UniProtKB/TrEMBL
BLAST of Spo20823.1 vs. ExPASy Swiss-Prot
BLAST of Spo20823.1 vs. TAIR (Arabidopsis)

BLAST of Spo20823.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20823.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20823.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20823.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0016246	RNA interference
biological_process	GO:0009611	response to wounding
biological_process	GO:0008152	metabolic process
biological_process	GO:0009744	response to sucrose
biological_process	GO:0048571	long-day photoperiodism
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0048825	cotyledon development
biological_process	GO:0006554	lysine catabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000932	P-body
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo09964	0.68	Barchart \| Table
Spo14106	0.68	Barchart \| Table
Spo04646	0.67	Barchart \| Table
Spo09711	0.66	Barchart \| Table
Spo11835	0.66	Barchart \| Table
Spo26272	0.66	Barchart \| Table
Spo05284	0.66	Barchart \| Table