Spo20846 (gene)

Overview
NameSpo20846
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionDNA-directed RNA polymerase II subunit, putative
LocationSuper_scaffold_120 : 1644470 .. 1649393 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAGTTTGTCATTACCTCTAAAATTATCCCTAGAATCCAACAGTCAGGCAAAGGGTTTTAGACTTTTAGCTCATTTCTCTCTCCTCAAAGAAAAACCCTGCAATCGAAAACTCAGAAACCCTAAAAATGGAGGGAGCATCCTACCAACGGTTCCCCGAAATCAAAATCAGAGAAATGCGTGATGATTTCATGAAATTCGAGCTCCGCAAAACCGACTCCAGCATGGCTAACGCTCTCCGCCGTGTAATGATAGCCGAGGTGCCGACGGTCGCGGTCGATCTTGTCGAAATCGAAGTTAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCACCGCCTCGGCCTCATCCCTCTTACTAGTGAACGTGCCATGGCCATGCGGTTTTCGCGTGACTGCGACGCCTGCGACGGTGACGGACAGTGTGAGTATTGCTCGGTGGAGTTTCATCTTCGGGCCAAGTGTATCGGCGATCAAACCCTAGATGTTACTAGCAAGGATTTGTTGAGCTCTGACCATACTGTTACTCCGGTTGATTTCTCTGAGGCTCCTGCTACTGAAGATGCTACTGATAACAGGTATAACTTCGTCAAATTTCGTCTGAGTTTTTTCGTTTTGTTTTAATTTATGTTGGTTTCTTTATTTTTGTTAAATTTCCCCTCTTTCACGGTTTTGCATCTTAGAAATTGTTAGGGTTTATGATTTTCTGTGTATCTATTGTTCAGTACTTTCTTATCCTGGGTTAGAATTCAAATTGATGACAGTGCTACATTTTTTATTATCCTTCTGTATTGGACTATTTGGGTGTTCCTATTATTATTGTGGAATTTCTAAGATCTTGTTTGCAGTGAGATTTTGTAAATCTACTTTGTAAATCTACTAGTTTGGAATCCATGCATACTTTTGGAAGTGAGAATTAGTTTGTTTTTATTAATACTAGGTTTTGGTGTTTAAAGTTGTCAACTTTGGCTTATTATTAGGAAAATGAAGGCCAGGTATAAGAGGAAAGTGGTAATGAACTGGCGAAGGAGAAAGGGGGAATTTGTGGAACAGGGTAGAAAAGCGGGGTTTGTTTTCTTAGCCATTTCCTTTGGTTGGATTATAGTAACAGGGATATGTTTTGTGACGTATTGAGTCCCATTTGAGTAAGGTAACCATAGGCTATGGCGAATGGGATTTGGTTTGATCTTATGGGATACATTGAAATATTGAACCACAAATTCGAGGTAAAAAATGTTTCTTTTCTTCTATTTGAATTTTGTGTATGGATCAATATTTGTAAGAAGCTTGAAACTGAACAAATTTGTTCGTCTGAGAGAGGGGGTAAAAAGAGAGAACTGGTATGGGCAAGTGTTGTACAGAGTATGGCACTTATGCAACATGCCATACTCTAATATGATTGCAAGAATTATCTAGAGTTGTCTTTGACTTTTAGTTTGTATGTAAGTCGCACATGTGTTTTACCTGGTTTACCTTACCTCTAAAGGCTCAAAAAAACTTGAGATGTTCTGGATCACCCTAAAGAGATTACTTTTGAAGAATAGACTTGGATCCACTGTTGATGATAGCATTAAAACAACGGCATTTAACTTAAATGACAAATTCCTCCTAAGCACTAGAATTTTCCCTTGATAGGCTATAAGGAGATTTAGAATATCACAGCCATGGCCTATACCTTCACTGGACTTCTTAGCTAGGAACTATTTTTCATAATTTTAATAGGGGTTATCTATGGGTGTGTTTTATAGAGATGCTAAAAGCTTGAATTGGGACAAATACTTAGTTCCTGAGAGAGACGGAGAGAGGTATAAGTAGCAGGGGATATACAGATAGAGTTATTTGTTTGGATTTGTAAGTCTGTTTGTATATTAAAAAAACGCTATTGGATCTGTTGATTGTGATCTGTTTTGGTACTGCTTATATACATCATGCAATGCTTGTCCAGGACTCCAGAGTCCAGAAAGTCCAAACTCTAGATTTAGCTGTAATAACAACTGGTTTGGATCTATGTTTCAGAAGGTGTGAAACATTGATTATCTTACCATCTTAAAAGAGTTAATACTCATAAAAGATGAGATGTTCTGGGAACCCTCAAAGAAATAATTTTTGAAGAAGGGACATGTTTATCAACCGTAAATGACAGCTTTGAGACAATCCCTTCGAATGCAAATGACAAATAGCATCGTCTTGTGTAGCTCTGTAATTGATGATGTCCTATACTTCCATAAATGAAAAATATGTGGACTTTAAGTGATATGGAACAACATGATTTCTTTCTTTTTTCATTATCATTATCATTACCCCATTGCCTCATAGAGGCTCCCGCAAGAAGCGAGATAAGGGGGAGTCGGACGTACGCAACCTTACCCCTGCAATTGCTTTCCAATTGACCCAAAATCGATAACGGGACGACCATCTTCTACTTCATGGATAGGAAGCGAATAGGTTTTAAGAGCCATTTTGATTTAGTCCATACATCCCAAAAGAAAAAATGATTTAGTCCATTTTTATTTCTTTCTTTTTATTATAATAAAAACATACGTCAAGCTTAGATCCTGTCATTGGTGGGGACATGGGAGGATTTTTATTTCGATTTGTTCTACTTTTACAAATGCTGCTTTCTCTAATTGTTGTTTGGGCACTTCTGTTTGCTTTGGTGTCACGCAGGGGGATCATAATCGTGAAGTTACGTAAAGGTCAAGAGTTGAAGCTTAGAGCAATAGCTAGAAAAGGCATAGGGAAAGACCACGCTAAATGGTCTCCTGCTGCAACAGTCACCTTTATGTATGAACCGGAGATTCTTATCAACGATGATTTGATGGAATCCTTGTCACTAGAACAAAAGAAAGATTGGGTTGAAAGCAGTCCTACCAAAGTCTTTGACATTGATCCTAATACTCAGCAGGTTGGTAATATCTCATATGTACGGGTTTTGTTGTATCACTGTTGAAATTGTGTGATAAGTTGTGTCTCTGGCCTTTAGATGTAAAAAAATTTCAAGGCAAATTTTGCGTGTAGATTATTTCAGAAGGTCATAAATAGGTTGAATAGGGTTATCCTGAGAGCAAGCAGAGAGAAAATACTAACTCCTCACTCCTTGCGGAATAGGCATTACTAGATAGAAAAGAATACCATTTTTTTTTGTTGGTAATGAATTATTACATGCTGCAACAACTTTGGCCTAAATTAGTTGTTTGGGCTGCACATGCGTACTAATAGGTTTTGTGAAAGCGTGATTTGATTGAAATATTTTAGTTGGCATTTGTTCGCTTGTTTATCATTTATTTGATTGGATTTTAAGACTACTTGATTGGATGTTATGACTGCTGTGAAGAAAGAAGATGTTATATTTTTGTTTCTTGATTTTGCTAGCATATTTCTATGATCCTGTTGATTTACCACTAGTATCAAAAGAAATTCATTTTGCATAGTCGTGTTCTTATTATATCCTGTGGTTCTCAAATGAGTAAATGACTTATATCATAGTCTACAATACTGTGTTATCTCACATAGTTTTCATCTCAACTTTGAAGCCCCTTATTTTCTGTTAGTTAATATATGATCGTGTTTCCCAGTTTCCCTCCGCCATTCAATACATGGCAAGCCAAGTAACTAGGTTAACTGTTTTAAAAAAAAATTATCACATAATATATTCATGTGTCTGCTATATGTATGGTTGTGCACTTGTACCCTGATAAATAGGTCTCTGGATCGAGATGTGTGCACAACAGTCAACAGCACAGGTAATATTGGGGAAGGGATTCCCCGAAGAGTTGATAAAGTTTAGTATATAAGCTAACATATCTAATCTTAAAGTGGGTTGTAGAAGGGTAATGTTTGATCAAGTGGGTCAGTTGGAACAAGATGTTATAACTTTGAGGTGATATCTGACTATGTTTAGATCTTTAAAGCCAAACTTGGTAGCATTTTTGGTTGTGTCGGTTTTCATACTTAAGACTCTATGCTTGTATTTCAGATTTTAAGAAACTGAACATTATATATCTTTGTCGTGCCCCATACAGGTTGTTGTAGTTGATCCTGAGGCCTATACCTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGGAAGTCGGGACTTGTTGAGATTTACCCAAAAGAGGACAGTTTTATATTTACTGTTGAATCTACTGGTGCAGTCAAGGCTCCTCTACTTTTGCTTAATGCAATTGAAGTCCTGAAGCAGAAGTTAGATGCAGTTCGATTGCCTGAAGACTCTGTAGATGCTGATGATTTTGGAGAATTAGGTGCTCACATGCGAGGAGGCTGATTAGCTTTGCCTAATTTACTCATGTATGATGAGACAATCCTCAACTTGTTAATTACCTGGTGGTTGTTATTCTCTTGTCTCTTATTGCATCCCTAACTTGAAAGTTGAAAGTGGCCTGCTGCTATTTTGTCCAAAACTAACAATCACTGGCATAGACCACTCCTGTATAGACTATCTTCCGTGATGCATCATCTGATTGACCGTTTACTTTAACTGGTGCAGTTTTTGTTGTGTAATTCAAGCTGAAAAACAGAATCCAAAGTTTTGACAAACTATATAATGCCTTGTCATTGCTCGTATCAACACCGTGATAAGCTTGTCTCAGTCCTTACAGCGCGTTTGATGCTACTTGGTTATATTTACTCCAAATTATCTTGCTACATTTTATTTGTAAAGTTGCAGTATCGTACCTCTATTTCAGGACTATATTTTGGAATGTGTTCATGTTGTAAGCTTGAAACTACTAAAATCCTGAGTTAAGTATATTGTTGGGTGAAACTCAATCACTGGTAGAAATTATATTGGTTGAAATGTTTGAGTTTAAGTTTCCTGATGATGGAATTAGATTCATTAATCTTCCAAATTTGAAGAAACTCCATATATCAAAGATTCGCACCCTCCCTTGACGGATACCC

mRNA sequence

CAAGTTTGTCATTACCTCTAAAATTATCCCTAGAATCCAACAGTCAGGCAAAGGGTTTTAGACTTTTAGCTCATTTCTCTCTCCTCAAAGAAAAACCCTGCAATCGAAAACTCAGAAACCCTAAAAATGGAGGGAGCATCCTACCAACGGTTCCCCGAAATCAAAATCAGAGAAATGCGTGATGATTTCATGAAATTCGAGCTCCGCAAAACCGACTCCAGCATGGCTAACGCTCTCCGCCGTGTAATGATAGCCGAGGTGCCGACGGTCGCGGTCGATCTTGTCGAAATCGAAGTTAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCACCGCCTCGGCCTCATCCCTCTTACTAGTGAACGTGCCATGGCCATGCGGTTTTCGCGTGACTGCGACGCCTGCGACGGTGACGGACAGTGTGAGTATTGCTCGGTGGAGTTTCATCTTCGGGCCAAGTGTATCGGCGATCAAACCCTAGATGTTACTAGCAAGGATTTGTTGAGCTCTGACCATACTGTTACTCCGGTTGATTTCTCTGAGGCTCCTGCTACTGAAGATGCTACTGATAACAGGGGGATCATAATCGTGAAGTTACGTAAAGGTCAAGAGTTGAAGCTTAGAGCAATAGCTAGAAAAGGCATAGGGAAAGACCACGCTAAATGGTCTCCTGCTGCAACAGTCACCTTTATGTATGAACCGGAGATTCTTATCAACGATGATTTGATGGAATCCTTGTCACTAGAACAAAAGAAAGATTGGGTTGAAAGCAGTCCTACCAAAGTCTTTGACATTGATCCTAATACTCAGCAGGTTGTTGTAGTTGATCCTGAGGCCTATACCTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGGAAGTCGGGACTTGTTGAGATTTACCCAAAAGAGGACAGTTTTATATTTACTGTTGAATCTACTGGTGCAGTCAAGGCTCCTCTACTTTTGCTTAATGCAATTGAAGTCCTGAAGCAGAAGTTAGATGCAGTTCGATTGCCTGAAGACTCTGTAGATGCTGATGATTTTGGAGAATTAGGTGCTCACATGCGAGGAGGCTGATTAGCTTTGCCTAATTTACTCATTTTTTGTTGTGTAATTCAAGCTGAAAAACAGAATCCAAAGTTTTGACAAACTATATAATGCCTTGTCATTGCTCGTATCAACACCGTGATAAGCTTGTCTCAGTCCTTACAGCGCGTTTGATGCTACTTGGTTATATTTACTCCAAATTATCTTGCTACATTTTATTTGTAAAGTTGCAGTATCGTACCTCTATTTCAGGACTATATTTTGGAATGTGTTCATGTTGTAAGCTTGAAACTACTAAAATCCTGAGTTAAGTATATTGTTGGGTGAAACTCAATCACTGGTAGAAATTATATTGGTTGAAATGTTTGAGTTTAAGTTTCCTGATGATGGAATTAGATTCATTAATCTTCCAAATTTGAAGAAACTCCATATATCAAAGATTCGCACCCTCCCTTGACGGATACCC

Coding sequence (CDS)

ATGGAGGGAGCATCCTACCAACGGTTCCCCGAAATCAAAATCAGAGAAATGCGTGATGATTTCATGAAATTCGAGCTCCGCAAAACCGACTCCAGCATGGCTAACGCTCTCCGCCGTGTAATGATAGCCGAGGTGCCGACGGTCGCGGTCGATCTTGTCGAAATCGAAGTTAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCACCGCCTCGGCCTCATCCCTCTTACTAGTGAACGTGCCATGGCCATGCGGTTTTCGCGTGACTGCGACGCCTGCGACGGTGACGGACAGTGTGAGTATTGCTCGGTGGAGTTTCATCTTCGGGCCAAGTGTATCGGCGATCAAACCCTAGATGTTACTAGCAAGGATTTGTTGAGCTCTGACCATACTGTTACTCCGGTTGATTTCTCTGAGGCTCCTGCTACTGAAGATGCTACTGATAACAGGGGGATCATAATCGTGAAGTTACGTAAAGGTCAAGAGTTGAAGCTTAGAGCAATAGCTAGAAAAGGCATAGGGAAAGACCACGCTAAATGGTCTCCTGCTGCAACAGTCACCTTTATGTATGAACCGGAGATTCTTATCAACGATGATTTGATGGAATCCTTGTCACTAGAACAAAAGAAAGATTGGGTTGAAAGCAGTCCTACCAAAGTCTTTGACATTGATCCTAATACTCAGCAGGTTGTTGTAGTTGATCCTGAGGCCTATACCTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGGAAGTCGGGACTTGTTGAGATTTACCCAAAAGAGGACAGTTTTATATTTACTGTTGAATCTACTGGTGCAGTCAAGGCTCCTCTACTTTTGCTTAATGCAATTGAAGTCCTGAAGCAGAAGTTAGATGCAGTTCGATTGCCTGAAGACTCTGTAGATGCTGATGATTTTGGAGAATTAGGTGCTCACATGCGAGGAGGCTGA

Protein sequence

MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPEDSVDADDFGELGAHMRGG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20846.1Spo20846.1mRNA


Homology
[Close]
BLAST of Spo20846.1 vs. NCBI nr
Match: gi|902229643|gb|KNA21560.1| (hypothetical protein SOVF_042120 [Spinacia oleracea])

HSP 1 Score: 624.4 bits (1609), Expect = 1.100e-175
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE
Sbjct: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300

Query: 301 DSVDADDFGELGAHMRGG 319
           DSVDADDFGELGAHMRGG
Sbjct: 301 DSVDADDFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. NCBI nr
Match: gi|731360255|ref|XP_010691712.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 586.3 bits (1510), Expect = 3.300e-164
Identity = 293/318 (92.14%), Postives = 309/318 (97.17%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP IKIREMRDDF+KFELR TDSS+ANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPRIKIREMRDDFLKFELRDTDSSVANALRRVMIAEVPTVAVDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDLLSSDHTVTP+DFS++PA +DA+DNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVTPIDFSDSPAADDASDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEILIN+DLME+L+LEQKK WVESSPTKVFDIDPNTQQVV+VDPEAY Y
Sbjct: 181 SPAATVTFMYEPEILINEDLMETLTLEQKKAWVESSPTKVFDIDPNTQQVVIVDPEAYAY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEVIKKAEAMGK GLVEIYPKEDSFIFTVESTGAVKA  L+LNAIE+LKQKLDAVRLPE
Sbjct: 241 DDEVIKKAEAMGKPGLVEIYPKEDSFIFTVESTGAVKAYQLVLNAIEILKQKLDAVRLPE 300

Query: 301 DSVDADDFGELGAHMRGG 319
           D+VDADDFGELGAHMRGG
Sbjct: 301 DTVDADDFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. NCBI nr
Match: gi|870848875|gb|KMT01164.1| (hypothetical protein BVRB_9g224160 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 586.3 bits (1510), Expect = 3.300e-164
Identity = 293/318 (92.14%), Postives = 309/318 (97.17%), Query Frame = 1 

		  

Query: 1    MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
            MEG SYQRFP IKIREMRDDF+KFELR TDSS+ANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 784  MEGVSYQRFPRIKIREMRDDFLKFELRDTDSSVANALRRVMIAEVPTVAVDLVEIEVNSS 843

Query: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
            VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 844  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 903

Query: 121  TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
            TSKDLLSSDHTVTP+DFS++PA +DA+DNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 904  TSKDLLSSDHTVTPIDFSDSPAADDASDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 963

Query: 181  SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
            SPAATVTFMYEPEILIN+DLME+L+LEQKK WVESSPTKVFDIDPNTQQVV+VDPEAY Y
Sbjct: 964  SPAATVTFMYEPEILINEDLMETLTLEQKKAWVESSPTKVFDIDPNTQQVVIVDPEAYAY 1023

Query: 241  DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
            DDEVIKKAEAMGK GLVEIYPKEDSFIFTVESTGAVKA  L+LNAIE+LKQKLDAVRLPE
Sbjct: 1024 DDEVIKKAEAMGKPGLVEIYPKEDSFIFTVESTGAVKAYQLVLNAIEILKQKLDAVRLPE 1083

Query: 301  DSVDADDFGELGAHMRGG 319
            D+VDADDFGELGAHMRGG
Sbjct: 1084 DTVDADDFGELGAHMRGG 1101
[Close]
BLAST of Spo20846.1 vs. NCBI nr
Match: gi|255555327|ref|XP_002518700.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ricinus communis])

HSP 1 Score: 537.7 bits (1384), Expect = 1.300e-149
Identity = 273/319 (85.58%), Postives = 298/319 (93.42%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFP IKIRE++DD+ KFELR TD+SMANALRRVMIAEVPTVA+DLVEIEVNSS
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQC+YCSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDFS++    D+++ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGY-DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I IN+DLMESLSLE+K+ WVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAE+MGK GLV I  KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. NCBI nr
Match: gi|823203502|ref|XP_012436162.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Gossypium raimondii])

HSP 1 Score: 536.2 bits (1380), Expect = 3.900e-149
Identity = 272/319 (85.27%), Postives = 299/319 (93.73%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP++KIRE++DD+ KFELR TD+SMANALRRVMI+EVPT+A+DLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDF++  A  D+T+ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFTDN-AGYDSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEI IN+DLMESL+LE+K  +VESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEV+KKAEAMGK GLVEIY KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPV4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042120 PE=4 SV=1)

HSP 1 Score: 624.4 bits (1609), Expect = 7.600e-176
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE
Sbjct: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300

Query: 301 DSVDADDFGELGAHMRGG 319
           DSVDADDFGELGAHMRGG
Sbjct: 301 DSVDADDFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g224160 PE=4 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 2.300e-164
Identity = 293/318 (92.14%), Postives = 309/318 (97.17%), Query Frame = 1 

		  

Query: 1    MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
            MEG SYQRFP IKIREMRDDF+KFELR TDSS+ANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 784  MEGVSYQRFPRIKIREMRDDFLKFELRDTDSSVANALRRVMIAEVPTVAVDLVEIEVNSS 843

Query: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
            VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 844  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 903

Query: 121  TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
            TSKDLLSSDHTVTP+DFS++PA +DA+DNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 904  TSKDLLSSDHTVTPIDFSDSPAADDASDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 963

Query: 181  SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
            SPAATVTFMYEPEILIN+DLME+L+LEQKK WVESSPTKVFDIDPNTQQVV+VDPEAY Y
Sbjct: 964  SPAATVTFMYEPEILINEDLMETLTLEQKKAWVESSPTKVFDIDPNTQQVVIVDPEAYAY 1023

Query: 241  DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
            DDEVIKKAEAMGK GLVEIYPKEDSFIFTVESTGAVKA  L+LNAIE+LKQKLDAVRLPE
Sbjct: 1024 DDEVIKKAEAMGKPGLVEIYPKEDSFIFTVESTGAVKAYQLVLNAIEILKQKLDAVRLPE 1083

Query: 301  DSVDADDFGELGAHMRGG 319
            D+VDADDFGELGAHMRGG
Sbjct: 1084 DTVDADDFGELGAHMRGG 1101
[Close]
BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: B9RYB6_RICCO (DNA-directed RNA polymerase II subunit, putative OS=Ricinus communis GN=RCOM_0811900 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 9.400e-150
Identity = 273/319 (85.58%), Postives = 298/319 (93.42%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFP IKIRE++DD+ KFELR TD+SMANALRRVMIAEVPTVA+DLVEIEVNSS
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQC+YCSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDFS++    D+++ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGY-DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I IN+DLMESLSLE+K+ WVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAE+MGK GLV I  KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SZ13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 2.700e-149
Identity = 272/319 (85.27%), Postives = 299/319 (93.73%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP++KIRE++DD+ KFELR TD+SMANALRRVMI+EVPT+A+DLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDF++  A  D+T+ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFTDN-AGYDSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEI IN+DLMESL+LE+K  +VESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEV+KKAEAMGK GLVEIY KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MXX2_GOSAR (DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum GN=F383_29872 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 2.700e-149
Identity = 272/319 (85.27%), Postives = 299/319 (93.73%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP++KIRE++DD+ KFELR TD+SMANALRRVMI+EVPT+A+DLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDF++  A  D+T+ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFTDN-AGYDSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEI IN+DLMESL+LE+K  +VESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEV+KKAEAMGK GLVEIY KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318
[Close]
BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 5.500e-143
Identity = 254/319 (79.62%), Postives = 296/319 (92.79%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+GA+YQRFP+IKIRE++DD+ KFELR+TD SMANALRRVMI+EVPTVA+DLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L +KC+ DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +  D+++++GIIIVKLR+GQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I+IN+D+M++LS E+K D +ESSPTKVF +DP T+QVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI PK+DSFIFTVESTGAVKA  L+LNAI++LKQKLDAVRL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
[Close]
BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 470.7 bits (1210), Expect = 1.300e-131
Identity = 232/319 (72.73%), Postives = 284/319 (89.03%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+G +YQRFP +KIRE++DD+ KFELR+TD SMANALRRVMI+EVPT+A+ LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIA RL LIPLTSERAM+MRF +DC+ C+GD  CE+CSVEF L AKC+ DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +T D+++++GIII KLR+GQELKL+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVT+MYEP+I+IN+++M +L+ E+K D +ESSPTKVF IDP T QVVVVDPEAYTY
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI+PK DSF+FTVESTGA+KA  L+LNAI++LKQKLDA+RL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           ++V+ADD FGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319
[Close]
BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 9.500e-71
Identity = 145/292 (49.66%), Postives = 200/292 (68.49%), Query Frame = 1 

		  

Query: 8   RFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFI 67
           R PE++I E+++D + F L  TD S+ANALRRVMIAEVPT+ +DLVE E N+SVL DEFI
Sbjct: 10  RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69

Query: 68  AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKDLLS 127
           AHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS DLLS
Sbjct: 70  AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 129

Query: 128 SDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVT 187
            +  V PV    +     +   + I IVKLR+GQE+KLRAIA+KG+GK+HAKWSP+   T
Sbjct: 130 QNSAVIPV----SSQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVAT 189

Query: 188 FMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDP--NTQQVVVVDPEAYTYDDEVI 247
           + ++P I++N + ++ L+ +QK++WV S PTKV+   P  +TQQV + DP    Y  E  
Sbjct: 190 YQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECK 249

Query: 248 KKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVR 298
           KKAE+ GK  LV +  K+D FIFTVES+GA+K   ++L AI+++K+KL  ++
Sbjct: 250 KKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294
[Close]
BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: CNJC_TETTH (Conjugation stage-specific protein OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.300e-46
Identity = 117/296 (39.53%), Postives = 173/296 (58.45%), Query Frame = 1 

		  

Query: 23  KFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
           +F L   D S+AN+LRR+++AE+ T+A+  V++  N+S L DE+IAHRLGLIPL S +  
Sbjct: 17  EFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHRLGLIPLNSAKVD 76

Query: 83  AMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKDLLS-SDHT----VTPVDF 142
              +  +C+     G+C+ C++ F LR     ++ L+VTS DL    DHT    V P+  
Sbjct: 77  DYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQDHTDEDAVRPIKV 136

Query: 143 SEAPATEDATDNR-GIIIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEILI 202
                 E       GI I+KL KGQ++     A+KGIGK H+KW+P    TF  EPEI+ 
Sbjct: 137 YSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVCISTFSVEPEIIF 196

Query: 203 NDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDE-VIKKAEAMGKSG 262
           + ++ ++L +EQKK  V + PTKVF I+P+T  + V D     Y +E V K AE   K  
Sbjct: 197 DQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMYCEECVYKCAEDFQKPK 256

Query: 263 LVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVR--LPEDSVDADDFG 310
           L++I  K+D F F VE+TG +K   +L      L+QKLD +R  + E+S +  ++G
Sbjct: 257 LIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMREQIQENSNNQFEYG 308
[Close]
BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.100e-46
Identity = 116/290 (40.00%), Postives = 169/290 (58.28%), Query Frame = 1 

		  

Query: 6   YQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDE 65
           Y   P ++I E+ D+ +KF +  TD ++AN++RRV IAEVP +A+D V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C  DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LLSSDHTVTPV-DFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKWSPA 185
           L+S+   V PV   +      D  +   I+IVKLRKGQEL+LRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDE 245
           A V F Y+P     D+ +      + ++W +S   +  ++D +  Q    DP        
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDEDESQ-APYDPNG------ 242

Query: 246 VIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKL 294
                             K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ------------------KPERFYYNVESCGSLRPETIVLSALSGLKKKL 256
[Close]
BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 508.4 bits (1308), Expect = 3.100e-144
Identity = 254/319 (79.62%), Postives = 296/319 (92.79%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+GA+YQRFP+IKIRE++DD+ KFELR+TD SMANALRRVMI+EVPTVA+DLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L +KC+ DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +  D+++++GIIIVKLR+GQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I+IN+D+M++LS E+K D +ESSPTKVF +DP T+QVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI PK+DSFIFTVESTGAVKA  L+LNAI++LKQKLDAVRL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319
[Close]
BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 470.7 bits (1210), Expect = 7.100e-133
Identity = 232/319 (72.73%), Postives = 284/319 (89.03%), Query Frame = 1 

		  

Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+G +YQRFP +KIRE++DD+ KFELR+TD SMANALRRVMI+EVPT+A+ LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIA RL LIPLTSERAM+MRF +DC+ C+GD  CE+CSVEF L AKC+ DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +T D+++++GIII KLR+GQELKL+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVT+MYEP+I+IN+++M +L+ E+K D +ESSPTKVF IDP T QVVVVDPEAYTY
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI+PK DSF+FTVESTGA+KA  L+LNAI++LKQKLDA+RL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           ++V+ADD FGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319
[Close]
BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 131.3 bits (329), Expect = 1.000e-30
Identity = 94/319 (29.47%), Postives = 163/319 (51.10%), Query Frame = 1 

		  

Query: 3   GASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVL 62
           G  Y  F ++ +  +    M+F++   D++ ANA RR++IAEVP++A++ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDLL-----------SSDHTVTPVDFSEAPATEDATD----------NRGIIIVKLRKG 182
           + DL            S + T  P  ++    ++D+            +  I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELKLRAIARKGIGKDHAKWSPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKV 242
           QE++L A A KGIGK HAKWSP  T  +   PE+++  ++ + L+    +  V   P  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 FDID---PNTQQVVVVDPEAYTYDDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVK 297
           FDI+      ++  V  P   T   E ++  + +     V++   ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367
[Close]
BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT1G60620.1 (RNA polymerase I subunit 43)

HSP 1 Score: 129.4 bits (324), Expect = 3.900e-30
Identity = 94/311 (30.23%), Postives = 162/311 (52.09%), Query Frame = 1 

		  

Query: 11  EIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFIAHR 70
           ++ +  + +  M F++    + +ANA RR+++AE+P++A++ V +  N+SV+ DE +AHR
Sbjct: 82  KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141

Query: 71  LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCI-GDQTLDVTSKDLL--- 130
           LGLIP+ ++  +    S      + D   E  ++ F L  KC+ GD    V + +L    
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 201

Query: 131 --------SSDHTVTPVDFSEAPATEDA----TDN------RGIIIVKLRKGQELKLRAI 190
                   S   T TP  ++    ++D+     +N      + I+I KL  GQE++L A 
Sbjct: 202 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 261

Query: 191 ARKGIGKDHAKWSPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQ 250
           A KGIGK HAKWSP AT  +   PE++    L++    +  ++ V+  P KVFDI+   Q
Sbjct: 262 AVKGIGKTHAKWSPVATAWYRMLPEVV----LLKEFEGKHAEELVKVCPKKVFDIEDMGQ 321

Query: 251 ---QVVVVDPEAYTYDDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNA 297
              +  V  P   +   E I+  + +     V++   ++ FIFT+ESTG+    +L   A
Sbjct: 322 GRKRATVARPRDCSLCRECIR--DGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEA 380
The following BLAST results are available for this feature:
BLAST of Spo20846.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902229643|gb|KNA21560.1|1.1e-175100.hypothetical protein SOVF_0421... [more]
gi|731360255|ref|XP_010691712.1|3.3e-16492.1PREDICTED: DNA-directed RNA po... [more]
gi|870848875|gb|KMT01164.1|3.3e-16492.1hypothetical protein BVRB_9g22... [more]
gi|255555327|ref|XP_002518700.1|1.3e-14985.5PREDICTED: DNA-directed RNA po... [more]
gi|823203502|ref|XP_012436162.1|3.9e-14985.2PREDICTED: DNA-directed RNA po... [more]
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BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RPV4_SPIOL7.6e-176100.Uncharacterized protein OS=Spi... [more]
A0A0J8BMG1_BETVU2.3e-16492.1Uncharacterized protein OS=Bet... [more]
B9RYB6_RICCO9.4e-15085.5DNA-directed RNA polymerase II... [more]
A0A0D2SZ13_GOSRA2.7e-14985.2Uncharacterized protein OS=Gos... [more]
A0A0B0MXX2_GOSAR2.7e-14985.2DNA-directed RNA polymerase II... [more]
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BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NRPB3_ARATH5.5e-14379.6DNA-directed RNA polymerases I... [more]
RPD3B_ARATH1.3e-13172.7DNA-directed RNA polymerases I... [more]
RPB3_DICDI9.5e-7149.6DNA-directed RNA polymerase II... [more]
CNJC_TETTH1.3e-4639.5Conjugation stage-specific pro... [more]
RPB3_BOVIN2.1e-4640.0DNA-directed RNA polymerase II... [more]
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BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT2G15430.13.1e-14479.6DNA-directed RNA polymerase fa... [more]
AT2G15400.17.1e-13372.7DNA-directed RNA polymerase fa... [more]
AT1G60850.21.0e-3029.4DNA-directed RNA polymerase fa... [more]
AT1G60620.13.9e-3030.2RNA polymerase I subunit 43[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001514DNA-directed RNA polymerase, 30-40kDa subunit, conserved sitePROSITEPS00446RNA_POL_D_30KDcoord: 35..75
scor
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF01193RNA_pol_Lcoord: 23..293
score: 1.5
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainunknownSSF55257RBP11-like subunits of RNA polymerasecoord: 213..297
score: 1.47E-31coord: 10..51
score: 1.47
IPR011262DNA-directed RNA polymerase, insert domainGENE3D2.170.120.12coord: 47..178
score: 1.4
IPR011262DNA-directed RNA polymerase, insert domainPFAMPF01000RNA_pol_A_baccoord: 53..181
score: 7.2
IPR011262DNA-directed RNA polymerase, insert domainunknownSSF56553Insert subdomain of RNA polymerase alpha subunitcoord: 46..182
score: 1.08
IPR011263DNA-directed RNA polymerase, RpoA/D/Rpb3-typeSMARTSM00662rpoldneu2coord: 21..299
score: 2.3
NoneNo IPR availableGENE3D3.30.1360.10coord: 6..46
score: 9.7E-40coord: 179..297
score: 9.7
NoneNo IPR availablePANTHERPTHR11800DNA-DIRECTED RNA POLYMERASEcoord: 5..316
score: 7.4E
NoneNo IPR availablePANTHERPTHR11800:SF2DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3coord: 5..316
score: 7.4E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0010564 regulation of cell cycle process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0042742 defense response to bacterium
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0051301 cell division
biological_process GO:0048825 cotyledon development
biological_process GO:0009880 embryonic pattern specification
biological_process GO:0010072 primary shoot apical meristem specification
biological_process GO:0006606 protein import into nucleus
biological_process GO:0006468 protein phosphorylation
biological_process GO:0045595 regulation of cell differentiation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0007062 sister chromatid cohesion
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0008283 cell proliferation
biological_process GO:0006334 nucleosome assembly
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006007 glucose catabolic process
biological_process GO:0009651 response to salt stress
biological_process GO:0007030 Golgi organization
biological_process GO:0009098 leucine biosynthetic process
biological_process GO:0015976 carbon utilization
biological_process GO:0009409 response to cold
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0006396 RNA processing
biological_process GO:0006364 rRNA processing
biological_process GO:0016570 histone modification
biological_process GO:0006397 mRNA processing
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0008033 tRNA processing
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0010431 seed maturation
biological_process GO:0016070 RNA metabolic process
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0006423 cysteinyl-tRNA aminoacylation
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0009097 isoleucine biosynthetic process
biological_process GO:0015940 pantothenate biosynthetic process
biological_process GO:0010015 root morphogenesis
biological_process GO:0016458 gene silencing
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0009186 deoxyribonucleoside diphosphate metabolic process
biological_process GO:0009202 deoxyribonucleoside triphosphate biosynthetic process
biological_process GO:0009263 deoxyribonucleotide biosynthetic process
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0044205 'de novo' UMP biosynthetic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0051726 regulation of cell cycle
biological_process GO:0006880 intracellular sequestering of iron ion
biological_process GO:0006275 regulation of DNA replication
biological_process GO:0010389 regulation of G2/M transition of mitotic cell cycle
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0032259 methylation
biological_process GO:0035999 tetrahydrofolate interconversion
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0034755 iron ion transmembrane transport
biological_process GO:0042176 regulation of protein catabolic process
biological_process GO:0009099 valine biosynthetic process
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0007049 cell cycle
biological_process GO:0006342 chromatin silencing
biological_process GO:0006306 DNA methylation
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0007017 microtubule-based process
biological_process GO:0051258 protein polymerization
biological_process GO:0042545 cell wall modification
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0009294 DNA mediated transformation
biological_process GO:0016572 histone phosphorylation
biological_process GO:0006344 maintenance of chromatin silencing
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0090241 negative regulation of histone H4 acetylation
biological_process GO:0051574 positive regulation of histone H3-K9 methylation
biological_process GO:0044030 regulation of DNA methylation
biological_process GO:0006349 regulation of gene expression by genetic imprinting
biological_process GO:0016246 RNA interference
biological_process GO:0032197 transposition, RNA-mediated
biological_process GO:0000373 Group II intron splicing
biological_process GO:0009089 lysine biosynthetic process via diaminopimelate
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0034969 histone arginine methylation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0008152 metabolic process
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0008361 regulation of cell size
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0048449 floral organ formation
biological_process GO:0010074 maintenance of meristem identity
biological_process GO:0010093 specification of floral organ identity
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0035246 peptidyl-arginine N-methylation
biological_process GO:0010220 positive regulation of vernalization response
biological_process GO:0006164 purine nucleotide biosynthetic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006526 arginine biosynthetic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0006560 proline metabolic process
biological_process GO:0006567 threonine catabolic process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0009845 seed germination
biological_process GO:0006269 DNA replication, synthesis of RNA primer
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0045010 actin nucleation
biological_process GO:0006412 translation
biological_process GO:0007155 cell adhesion
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0016571 histone methylation
biological_process GO:0019915 lipid storage
biological_process GO:0009933 meristem structural organization
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0009640 photomorphogenesis
biological_process GO:0010162 seed dormancy process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0000338 protein deneddylation
biological_process GO:0016579 protein deubiquitination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009909 regulation of flower development
biological_process GO:0050826 response to freezing
biological_process GO:0006810 transport
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0007389 pattern specification process
biological_process GO:0001510 RNA methylation
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006457 protein folding
biological_process GO:0009926 auxin polar transport
biological_process GO:0008356 asymmetric cell division
biological_process GO:0006270 DNA replication initiation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009308 amine metabolic process
biological_process GO:0006310 DNA recombination
biological_process GO:0006268 DNA unwinding involved in DNA replication
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006260 DNA replication
biological_process GO:0006281 DNA repair
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0006230 TMP biosynthetic process
biological_process GO:0016310 phosphorylation
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0005971 ribonucleoside-diphosphate reductase complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005829 cytosol
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005874 microtubule
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016592 mediator complex
cellular_component GO:0016020 membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030117 membrane coat
cellular_component GO:0000786 nucleosome
cellular_component GO:0005773 vacuole
cellular_component GO:0005643 nuclear pore
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0009579 thylakoid
cellular_component GO:0046809 replication compartment
cellular_component GO:0000785 chromatin
cellular_component GO:0042555 MCM complex
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0048046 apoplast
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0000502 proteasome complex
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005657 replication fork
cellular_component GO:0005777 peroxisome
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016459 myosin complex
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0044424 intracellular part
cellular_component GO:0009505 plant-type cell wall
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005381 iron ion transmembrane transporter activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0017056 structural constituent of nuclear pore
molecular_function GO:0003678 DNA helicase activity
molecular_function GO:0003688 DNA replication origin binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0004372 glycine hydroxymethyltransferase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004743 pyruvate kinase activity
molecular_function GO:0016631 enoyl-[acyl-carrier-protein] reductase activity
molecular_function GO:0003896 DNA primase activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0008837 diaminopimelate epimerase activity
molecular_function GO:0004817 cysteine-tRNA ligase activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0008131 primary amine oxidase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0030955 potassium ion binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0030515 snoRNA binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0004797 thymidine kinase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0004318 enoyl-[acyl-carrier-protein] reductase (NADH) activity
molecular_function GO:0004055 argininosuccinate synthase activity
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0016853 isomerase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
molecular_function GO:0004003 ATP-dependent DNA helicase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005200 structural constituent of cytoskeleton
molecular_function GO:0042803 protein homodimerization activity
molecular_function GO:0070402 NADPH binding
molecular_function GO:0004455 ketol-acid reductoisomerase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0004619 phosphoglycerate mutase activity
molecular_function GO:0030145 manganese ion binding
molecular_function GO:0003724 RNA helicase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0005488 binding
molecular_function GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity
molecular_function GO:0016905 myosin heavy chain kinase activity
molecular_function GO:0008469 histone-arginine N-methyltransferase activity
molecular_function GO:0031369 translation initiation factor binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo098330.78Barchart | Table
Spo123110.76Barchart | Table
Spo054610.75Barchart | Table
Spo180940.75Barchart | Table
Spo157510.75Barchart | Table
Spo119430.75Barchart | Table
Spo028380.74Barchart | Table
Spo232410.73Barchart | Table
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