Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTTCTTTGGAACCGCAAACCCTAAATGTAAGAAAAAATTTCGGAGAAGATGAATTCGGATGAGTTTGAAAACAAAATCCTTGCATCAAAAAAGTCGATTGGTAGCGGTAGAAAAATCCATTGTAGATGTGAGCCCGTTGTTGATGTTTATTCAGTGAAGTTGAATACGAATTCTTCTGAATCATGCGATGTTTATGGCGATATCAACTTGTTTGACATGAAAGGCGATAGCAATACCTGTATGCTATATCGACGTCAGGCAAACCAACCACAGGTTATACCTCCTAATCATGGCTACTTAAGGCTACAAGGTCCTCGCAAAGTGCCGCCGTTGGACAAACCTTTCATTGCCATGGATATCAGGGAGAAGACTACTGGAAAATCGATTGTAGAGGGGTCGACGCGTTTGATCAAGTCCATTGATAATGATGATGATGTTTTCGAACAATTTGGCAAAGTTTCAATTTCCAGTGACGGCTCTGGTGCCTCTGCTACGGTTGATTATTTAGCGCTAAGATATGCCGTGTTTGCTGCAGTTAGGATTGACCTCCTTGATAGCAATGCAGATGAAGTGTACGACAAACCGGAAGATGATGATGATGATGAAGATGAAGAAGACAAAGATGAAGAGGAAGTATTGGAGGTATATGGCAAAGTCACTGCTAATTTTAGTCTGTATAGTACTGAAGAAGTTTATCGGGTTAGTCTTTTCGACTGTTCTGATGAATCAAATATGATGGAATTGGTCGTGTTGGGTACTGATCTCTCTTTGAGTAGATCTTTGCTGGTTGTGCCACCGTATTCCCCTCTTGTGATTGAAGTAGACTTAACGGATGCTGCCAATGATGACGCCTTAATCGTTAATGACTCTGTCTCGTTCGAACCCGATAACCTTGGTTACAATCAGAAATTTATTAAGGGATCAAATGGTGTTGATGTCTGAGTTACTGTCAAGTGGATGGAACCATCTAAGCTAATATTCTATCCCACCGATAAGCTTGTCCCCGTAACAAATCCCTTGGTAAGTACTCCCTCTGTCCCTTTTTGTTTGCTGTTTTAGTCCGTCGGTAAAAAAATGTTTTCTTTATTTGAGATCCCAAATTTACTCACCCGTAAAATACATTTGGCCTGCCATTTTGTCTATTCCCAATCCCGCACAATAAATGTTGGGCTTACTATTTACCGCCCCACATTACTCAAAACCGCCCTAATATTTTACCTATATAACCCTCTTTATTTACCCCTGTTAAAATGAGTCTATGTTTCCTAAACTCAAATTCGATTTCTGATTGAACTTCCACACAATTCAACAAACAAATTTAATAAATAAACCACACAATTCAACCCAATCTGATTTTCTCTTCGTCATTAAAATCGAACTAATTGAACAAACGAATAAATCACAATATCATCCCAAAACAGGAAATTTAATAGAAAATTGAAAACCAAAAAAAACCAGAAAATTAAATCTAGCAAATTGGAATACATGAACTTTCATTTTAACATCTAATTGAACTCAAAAACCCAGAAAATTGGCGGCATCTAATTGACAAAAAACGTTTTCCTCGCCGGTTTTTTAACTCCCTTCGCCGCCGGTTGCTTGGCTCTCGTCGCCGACGATTCTTTTGTTACCTTCGCAGGATGATTTCGGCTACCGTCATGTGATTCCACCGGTGCTGTTGGTGCTAGATCCAAAGGAGAGGCGGCCGTAATGTACTGATTCTTGCCCCGTC TATTTCTTTGGAACCGCAAACCCTAAATGTAAGAAAAAATTTCGGAGAAGATGAATTCGGATGAGTTTGAAAACAAAATCCTTGCATCAAAAAAGTCGATTGGTAGCGGTAGAAAAATCCATTGTAGATGTGAGCCCGTTGTTGATGTTTATTCAGTGAAGTTGAATACGAATTCTTCTGAATCATGCGATGTTTATGGCGATATCAACTTGTTTGACATGAAAGGCGATAGCAATACCTGTATGCTATATCGACGTCAGGCAAACCAACCACAGGTTATACCTCCTAATCATGGCTACTTAAGGCTACAAGGTCCTCGCAAAGTGCCGCCGTTGGACAAACCTTTCATTGCCATGGATATCAGGGAGAAGACTACTGGAAAATCGATTGTAGAGGGGTCGACGCGTTTGATCAAGTCCATTGATAATGATGATGATGTTTTCGAACAATTTGGCAAAGTTTCAATTTCCAGTGACGGCTCTGGTGCCTCTGCTACGGTTGATTATTTAGCGCTAAGATATGCCGTGTTTGCTGCAGTTAGGATTGACCTCCTTGATAGCAATGCAGATGAAGTGTACGACAAACCGGAAGATGATGATGATGATGAAGATGAAGAAGACAAAGATGAAGAGGAAGTATTGGAGGTATATGGCAAAGTCACTGCTAATTTTAGTCTGTATAGTACTGAAGAAGTTTATCGGATCTTTGCTGGTTGTGCCACCGTATTCCCCTCTTGTGATTGAAGTAGACTTAACGGATGCTGCCAATGATGACGCCTTAATCGTTAATGACTCTGTCTCGTTCGAACCCGATAACCTTGGTTACAATCAGAAATTTATTAAGGGATCAAATGGTGTTGATGTCTGAGTTACTGTCAAGTGGATGGAACCATCTAAGCTAATATTCTATCCCACCGATAAGCTTGTCCCCGTAACAAATCCCTTGGATGATTTCGGCTACCGTCATGTGATTCCACCGGTGCTGTTGGTGCTAGATCCAAAGGAGAGGCGGCCGTAATGTACTGATTCTTGCCCCGTC ATGAATTCGGATGAGTTTGAAAACAAAATCCTTGCATCAAAAAAGTCGATTGGTAGCGGTAGAAAAATCCATTGTAGATGTGAGCCCGTTGTTGATGTTTATTCAGTGAAGTTGAATACGAATTCTTCTGAATCATGCGATGTTTATGGCGATATCAACTTGTTTGACATGAAAGGCGATAGCAATACCTGTATGCTATATCGACGTCAGGCAAACCAACCACAGGTTATACCTCCTAATCATGGCTACTTAAGGCTACAAGGTCCTCGCAAAGTGCCGCCGTTGGACAAACCTTTCATTGCCATGGATATCAGGGAGAAGACTACTGGAAAATCGATTGTAGAGGGGTCGACGCGTTTGATCAAGTCCATTGATAATGATGATGATGTTTTCGAACAATTTGGCAAAGTTTCAATTTCCAGTGACGGCTCTGGTGCCTCTGCTACGGTTGATTATTTAGCGCTAAGATATGCCGTGTTTGCTGCAGTTAGGATTGACCTCCTTGATAGCAATGCAGATGAAGTGTACGACAAACCGGAAGATGATGATGATGATGAAGATGAAGAAGACAAAGATGAAGAGGAAGTATTGGAGGTATATGGCAAAGTCACTGCTAATTTTAGTCTGTATAGTACTGAAGAAGTTTATCGGATCTTTGCTGGTTGTGCCACCGTATTCCCCTCTTGTGATTGA MNSDEFENKILASKKSIGSGRKIHCRCEPVVDVYSVKLNTNSSESCDVYGDINLFDMKGDSNTCMLYRRQANQPQVIPPNHGYLRLQGPRKVPPLDKPFIAMDIREKTTGKSIVEGSTRLIKSIDNDDDVFEQFGKVSISSDGSGASATVDYLALRYAVFAAVRIDLLDSNADEVYDKPEDDDDDEDEEDKDEEEVLEVYGKVTANFSLYSTEEVYRIFAGCATVFPSCD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20863.1 vs. NCBI nr
Match: gi|902203370|gb|KNA14525.1| (hypothetical protein SOVF_105880 [Spinacia oleracea]) HSP 1 Score: 426.8 bits (1096), Expect = 2.400e-116 Identity = 217/218 (99.54%), Postives = 218/218 (100.00%), Query Frame = 1
BLAST of Spo20863.1 vs. NCBI nr
Match: gi|902205643|gb|KNA15220.1| (hypothetical protein SOVF_100180 [Spinacia oleracea]) HSP 1 Score: 140.2 bits (352), Expect = 4.500e-30 Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1
BLAST of Spo20863.1 vs. NCBI nr
Match: gi|902136507|gb|KNA04462.1| (hypothetical protein SOVF_199510 [Spinacia oleracea]) HSP 1 Score: 103.6 bits (257), Expect = 4.700e-19 Identity = 74/214 (34.58%), Postives = 119/214 (55.61%), Query Frame = 1
BLAST of Spo20863.1 vs. NCBI nr
Match: gi|1021054195|gb|KZN11973.1| (hypothetical protein DCAR_004629 [Daucus carota subsp. sativus]) HSP 1 Score: 85.5 bits (210), Expect = 1.300e-13 Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 1
BLAST of Spo20863.1 vs. NCBI nr
Match: gi|902061851|gb|KNA02895.1| (hypothetical protein SOVF_214300, partial [Spinacia oleracea]) HSP 1 Score: 77.0 bits (188), Expect = 4.700e-11 Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
BLAST of Spo20863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4U5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105880 PE=4 SV=1) HSP 1 Score: 426.8 bits (1096), Expect = 1.700e-116 Identity = 217/218 (99.54%), Postives = 218/218 (100.00%), Query Frame = 1
BLAST of Spo20863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6T4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_100180 PE=3 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 3.200e-30 Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 1
BLAST of Spo20863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QB02_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199510 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.300e-19 Identity = 74/214 (34.58%), Postives = 119/214 (55.61%), Query Frame = 1
BLAST of Spo20863.1 vs. UniProtKB/TrEMBL
Match: A0A162BAG6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004629 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 9.200e-14 Identity = 67/197 (34.01%), Postives = 100/197 (50.76%), Query Frame = 1
BLAST of Spo20863.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q704_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214300 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 3.300e-11 Identity = 46/121 (38.02%), Postives = 71/121 (58.68%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20863.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20863.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20863.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo20863.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
RNA-Seq Expression
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