Spo20945 (gene)

Overview
NameSpo20945
Typegene
OrganismSpinacia oleracea (Spinach)
Descriptionserine-rich protein-related
LocationSpoScf_01105 : 189604 .. 189921 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTATGCCAATAAGTTCTCCTAAGAGCTTTGATGGAGAAAGTGTTGCATCTAACAACAACAACAACAACAACAACAACAAAGGTGGTCATTGCTTATGCTCTCCTACAACACACCAAGGCTCGTTTCGATGTCGATTTCATCGATCAAATGCTTCAACTTGGATGATGAAGCGTTCCAATTCCATGCCTATTACTAGGCCTTCAAAGAGTACGACTACTACTACTACGACTACTACAAATGATCAAACGCGTCCTAGTTTTGGTTCTTTCTCTCCTAAATCTACTGGCTCTCAACCCCGCGATACATATGAGTAA

mRNA sequence

ATGCCTATGCCAATAAGTTCTCCTAAGAGCTTTGATGGAGAAAGTGTTGCATCTAACAACAACAACAACAACAACAACAACAAAGGTGGTCATTGCTTATGCTCTCCTACAACACACCAAGGCTCGTTTCGATGTCGATTTCATCGATCAAATGCTTCAACTTGGATGATGAAGCGTTCCAATTCCATGCCTATTACTAGGCCTTCAAAGAGTACGACTACTACTACTACGACTACTACAAATGATCAAACGCGTCCTAGTTTTGGTTCTTTCTCTCCTAAATCTACTGGCTCTCAACCCCGCGATACATATGAGTAA

Coding sequence (CDS)

ATGCCTATGCCAATAAGTTCTCCTAAGAGCTTTGATGGAGAAAGTGTTGCATCTAACAACAACAACAACAACAACAACAACAAAGGTGGTCATTGCTTATGCTCTCCTACAACACACCAAGGCTCGTTTCGATGTCGATTTCATCGATCAAATGCTTCAACTTGGATGATGAAGCGTTCCAATTCCATGCCTATTACTAGGCCTTCAAAGAGTACGACTACTACTACTACGACTACTACAAATGATCAAACGCGTCCTAGTTTTGGTTCTTTCTCTCCTAAATCTACTGGCTCTCAACCCCGCGATACATATGAGTAA

Protein sequence

MPMPISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMPITRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGSQPRDTYE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo20945.1Spo20945.1mRNA


Homology
[Close]
BLAST of Spo20945.1 vs. NCBI nr
Match: gi|902196120|gb|KNA13039.1| (hypothetical protein SOVF_119870 [Spinacia oleracea])

HSP 1 Score: 206.5 bits (524), Expect = 2.300e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MPMPISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRS 60
           MPMPISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRS
Sbjct: 1   MPMPISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRS 60

Query: 61  NSMPITRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGSQPRDTYE 106
           NSMPITRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGSQPRDTYE
Sbjct: 61  NSMPITRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGSQPRDTYE 105
[Close]
BLAST of Spo20945.1 vs. NCBI nr
Match: gi|763797931|gb|KJB64886.1| (hypothetical protein B456_010G070100 [Gossypium raimondii])

HSP 1 Score: 72.8 bits (177), Expect = 4.100e-10
Identity = 45/93 (48.39%), Postives = 50/93 (53.76%), Query Frame = 1 

		  

Query: 6  SSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMPI 65
          +SPK  + E          N+ KGG CLCSPTTHQGSFRCRFHRS +S WMMKRS SMP 
Sbjct: 11 TSPKGSEAEVAP-------NSGKGGQCLCSPTTHQGSFRCRFHRSKSSAWMMKRSKSMPA 70

Query: 66 TRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGS 99
             S +                  SFSPKS  S
Sbjct: 71 NNSSTA------------------SFSPKSVES 78
[Close]
BLAST of Spo20945.1 vs. NCBI nr
Match: gi|763739454|gb|KJB06953.1| (hypothetical protein B456_001G004900 [Gossypium raimondii])

HSP 1 Score: 72.0 bits (175), Expect = 6.900e-10
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1 

		  

Query: 5  ISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMP 64
          I+SPK  + E+ AS   N+    KGG CLCSPTTHQGSFRCRFHRS++S+WMMKRS SMP
Sbjct: 10 ITSPKGSNSEAAASAAANSP---KGGQCLCSPTTHQGSFRCRFHRSSSSSWMMKRSKSMP 69

Query: 65 ITRPSKSTTTTTTTTT 81
              S  + +  +  T
Sbjct: 70 TNNTSMVSLSPKSVET 82
[Close]
BLAST of Spo20945.1 vs. NCBI nr
Match: gi|595808803|ref|XP_007202814.1| (hypothetical protein PRUPE_ppa014191mg [Prunus persica])

HSP 1 Score: 67.0 bits (162), Expect = 2.200e-8
Identity = 40/68 (58.82%), Postives = 42/68 (61.76%), Query Frame = 1 

		  

Query: 28 KGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMPITRPSKSTTTTTTTTTNDQTRPS 87
          KGG CLCSPTTHQGSFRCRFHRS +S W MKRS SMP               TN+    S
Sbjct: 28 KGGQCLCSPTTHQGSFRCRFHRSQSSAW-MKRSKSMP---------------TNNN---S 76

Query: 88 FGSFSPKS 96
            SFSPKS
Sbjct: 88 VASFSPKS 76
[Close]
BLAST of Spo20945.1 vs. NCBI nr
Match: gi|1021514948|ref|XP_016200920.1| (PREDICTED: uncharacterized protein LOC107642123 [Arachis ipaensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.400e-7
Identity = 39/70 (55.71%), Postives = 46/70 (65.71%), Query Frame = 1 

		  

Query: 6  SSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNAS------TWMMKR 65
          +SPKS D  S + N N N      GHCLCSPTTH+GSFRCR HRS++S      TW MKR
Sbjct: 14 TSPKS-DSGSGSGNGNGNGGGVAKGHCLCSPTTHEGSFRCRLHRSSSSNSSTSPTW-MKR 73

Query: 66 SNSMPITRPS 70
          S SMP  +P+
Sbjct: 74 SKSMPANKPA 81
[Close]
BLAST of Spo20945.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R269_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_119870 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.600e-50
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1 

		  

Query: 1   MPMPISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRS 60
           MPMPISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRS
Sbjct: 1   MPMPISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRS 60

Query: 61  NSMPITRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGSQPRDTYE 106
           NSMPITRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGSQPRDTYE
Sbjct: 61  NSMPITRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGSQPRDTYE 105
[Close]
BLAST of Spo20945.1 vs. UniProtKB/TrEMBL
Match: A0A0D2UAC0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G070100 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.800e-10
Identity = 45/93 (48.39%), Postives = 50/93 (53.76%), Query Frame = 1 

		  

Query: 6  SSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMPI 65
          +SPK  + E          N+ KGG CLCSPTTHQGSFRCRFHRS +S WMMKRS SMP 
Sbjct: 11 TSPKGSEAEVAP-------NSGKGGQCLCSPTTHQGSFRCRFHRSKSSAWMMKRSKSMPA 70

Query: 66 TRPSKSTTTTTTTTTNDQTRPSFGSFSPKSTGS 99
             S +                  SFSPKS  S
Sbjct: 71 NNSSTA------------------SFSPKSVES 78
[Close]
BLAST of Spo20945.1 vs. UniProtKB/TrEMBL
Match: A0A0D2N3J9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G004900 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.800e-10
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 1 

		  

Query: 5  ISSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMP 64
          I+SPK  + E+ AS   N+    KGG CLCSPTTHQGSFRCRFHRS++S+WMMKRS SMP
Sbjct: 10 ITSPKGSNSEAAASAAANSP---KGGQCLCSPTTHQGSFRCRFHRSSSSSWMMKRSKSMP 69

Query: 65 ITRPSKSTTTTTTTTT 81
              S  + +  +  T
Sbjct: 70 TNNTSMVSLSPKSVET 82
[Close]
BLAST of Spo20945.1 vs. UniProtKB/TrEMBL
Match: M5W422_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014191mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.500e-8
Identity = 40/68 (58.82%), Postives = 42/68 (61.76%), Query Frame = 1 

		  

Query: 28 KGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMPITRPSKSTTTTTTTTTNDQTRPS 87
          KGG CLCSPTTHQGSFRCRFHRS +S W MKRS SMP               TN+    S
Sbjct: 28 KGGQCLCSPTTHQGSFRCRFHRSQSSAW-MKRSKSMP---------------TNNN---S 76

Query: 88 FGSFSPKS 96
            SFSPKS
Sbjct: 88 VASFSPKS 76
[Close]
BLAST of Spo20945.1 vs. UniProtKB/TrEMBL
Match: A0A061GNT6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037897 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.500e-7
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 1 

		  

Query: 6  SSPKSFDGESVASNNNNNNNNNKGGHCLCSPTTHQGSFRCRFHRSNASTWMMKRSNSMPI 65
          +SPK  + E+    N+      KGG CLCSPTTHQGSFRCRFHRS++S W MKRS SMP 
Sbjct: 11 TSPKGSNSEAAVPTNSP-----KGGQCLCSPTTHQGSFRCRFHRSSSSAW-MKRSKSMPA 70

Query: 66 TRPSKSTTTTTTTTT 81
               S +  +  +T
Sbjct: 71 NGSLASLSPKSVEST 79
The following BLAST results are available for this feature:
BLAST of Spo20945.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902196120|gb|KNA13039.1|2.3e-50100.hypothetical protein SOVF_1198... [more]
gi|763797931|gb|KJB64886.1|4.1e-1048.3hypothetical protein B456_010G... [more]
gi|763739454|gb|KJB06953.1|6.9e-1055.2hypothetical protein B456_001G... [more]
gi|595808803|ref|XP_007202814.1|2.2e-858.8hypothetical protein PRUPE_ppa... [more]
gi|1021514948|ref|XP_016200920.1|1.4e-755.7PREDICTED: uncharacterized pro... [more]
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BLAST of Spo20945.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R269_SPIOL1.6e-50100.Uncharacterized protein OS=Spi... [more]
A0A0D2UAC0_GOSRA2.8e-1048.3Uncharacterized protein OS=Gos... [more]
A0A0D2N3J9_GOSRA4.8e-1055.2Uncharacterized protein OS=Gos... [more]
M5W422_PRUPE1.5e-858.8Uncharacterized protein OS=Pru... [more]
A0A061GNT6_THECC6.5e-750.6Uncharacterized protein OS=The... [more]
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BLAST of Spo20945.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo20945.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009805 coumarin biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0016310 phosphorylation
biological_process GO:0008152 metabolic process
biological_process GO:0035435 phosphate ion transmembrane transport
biological_process GO:0009611 response to wounding
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
cellular_component GO:0016020 membrane
cellular_component GO:0005622 intracellular
molecular_function GO:0005515 protein binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity
molecular_function GO:0015415 ATPase-coupled phosphate ion transmembrane transporter activity
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0005524 ATP binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression