Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTTTCCTCGTTCAAGCTAGATCTGGATGAGCTCATAAACGAGTTTTCCGAGGTGCGTTATCGATAGTCATGTTAAAATGGTTGGATATAACTGGTTCAATTTGAGTCTATTTTTGGGAGGAGGTGTGAGAACTTATTTTTTGTCCAGTATGCCATTCGCCTTCGTTGTACCATTTACAATTGTCTACATTCTTCGTTTCTATTGAATCGATTTTCTTTGGCTGTATTTGTATTCTTCTAGTTTTTTCTACGGGTTGTTTTCTTTGGAAGTTCTGTCTCTATTTTGGCTTTGCAAATAATGCCTTGTTATCAATCTTGTATAGTTGGATGCAAAAAAGCTAAAGCTCTTTATTCAACTACTAGCCTTTGTTCGTATGCAGGGAGGGCTTAAAACTTTAGCAGACATGAAAAGATTGTGGCTTGGGCGGAAGTTTTCCTACATATTTGAGGCTCGGCCTTCTACCAGCTCCAACATATTTATGCAATTCCTGTACAGTCATTCTATAAGTAAGTTTCTTTTTTTATGCTTAATGACATGTCATCACACATTTTGTTCTAAGAATCTAAGATGCATCTTTTATGTTTGGACCAACTGTAGAAAAGGATTTAGAATCTGAAGTCTAGATTATGTTATGATTTACCTTTTACAGAGAAATATGATCCAGTGTTTTGATATACGTACTTACAGCAGTTTATTGGACTCCTATAAGTAGTCCATGGTTCTAATCCAGCTTTTAGTCTCTCCACATCATGCACTTGGTATGATTTATATGTTCTGATATTTGTTTTTCTAAGATGTTTGATGTCCTGAGATTTCATGTGTGATATGAATCGGATAATCAATTCCGATTCAAAAGTAGGATAAGTGCATTTCAGTTGTCCCCTGCTTTTAAAAATGAATCTTATAGTTGATGTAGTGTTTTCCTACTTATCCTGGTGGCTGATATTCAGTCCCTTTTGTGTCTTGACAAATGACTGCTGTTTGTCTGATTGAAGTCCAAACCTTTTTGTTGTTGGACAAAATCTGATAATCTTTAATCTTTTTGTTATCATGCGCAGGTCACATGATCTCCACTAATTCTGTGTCACAAAGATTGGGAGCCCTCTATGTCCTCTATTGTCTCTATGAGACTCAGCCATTCAAGCCCCCATTCAAGATTTATCTATCACTTGGTATGTTTTTGCTTTTGCATATAAGTAAATTTTACTTCCTTCACTTCATTATTGAACCCTAAATGAAATCCGAAGCTATATTTAAGATGTATGTCTAATTGTCTATCATAAGTCACAGCCGATGAAGTTACCACTGATTGATTATTCTTGCCTTTCCCCCTTCTTTTTCAGGTGGCTAAAAACCTTTTATCTGGAAAACTAAATATAGTCTTCATAGTTGGTTCCCCCTGAAGTGATCCTGGGAAATTAGTTTTCTTCAAAGGCTCTCGTCTTAGGTACGAATATGGAGTTGCAGAGAGATGCAGTCTAATAATGGGAACAGTACTGAAACAATTAGTCTTTTCTTTAATACACACCACAACAACAAACTGATAAATATTTTTAAGGTGATCAAATAACCATAAAATTTGGCCTGAGTTACTGGTGTATACATACAATTTTCCTGAGTTACTGGTGTATAGTATAAAAACGTCTTATATGTCTTGTCTCAGAAACAGTAGGCAAGTAGATGTGTTTATGTCGTCTTTGATTAATTGGCACATATCCTTTCACTCCCTGCCTTTCTTTGTGAAGTGACTTAACCTCTTGATGGACTTGGCAGGAGAGTTACGAAGACTAAAAGCCCTGGTTGTAAATGCTAAAGAAAATGGAATCAAAATCGTATCTGTTTTGATCAAAAAGATGCTAGAGAAGAATGCATTCTTGTTTGGCTTTGTTAACATAAATGATTACTCTGAGAAAGAGAGGATAAAGGAGTTGGTAGATGTGCAGAATGCCTGTATAAAGAAGATGCATGAAAAGTATGTCCGACACTCATGTTATGCGTTAACAATCATAGCTACTTCAGCTTCATCAATGGTCTCATCATGCTGCTTTTCCTTTCTGTAGATTGTTGGCGAACACTGAGATTGAGCGTTACCTTCATATGGACATGGTATGTTGCATACTTTTATAATTTTTGGTTTCTTGTTGACTGTATTTTATGTATTATTTTAATACATCATGTTGTCACTGTCTTCTAAATTGATGCAAAAGCATTTTGATCAAAGCCACACACTATACATGACTGAATTCTGCGCTATCACAGTATCACTGTGAAACCGTGATATATCAGGCCTGTAGGATGCCTTACCCTCTATATCAAGTTTGTGAAGGTGTCCTATACATTAATATATTTGAAGGTTCTTTTAATCTAGGTTTTTAGTAGGTTTAGTAATGGACTAACGGGTGTTAAGTTAAAAAGGCCCAGAAAAAGTTGTTTGCGCCATTGAATTGCTTATTTTGAATCTGTGGCATCAATTTTGCTGCTGATTTTTCTCATAATAACTCGAACTTATGTAACAGGGCATGGAACTTGATCTAGAAGTGCTCAGGAAAATGTCCGAAGAATATGAAGGAACTAAAAGTCTTGCTATCAGAGGTATTCCATTCCATTATTTGCTTGTCGTTCTTTTCTCTTGCTACAACATGGTCAGGTTCATTATTTCAGAAAGTTATCTTGAGTTCCAAACTTAAATATTCTTCCGTGTTTTGTCTTGATTTATTGAACCCTGTTACTGGCAGGCTATTAAACAAACATGCAACCATGTCTGAAAATTAAATACTCATAAGAAGTATGTCTGTGTGTCTTGAGTATTCTAGTATTCTTGCAAATGGCAACAATTATCCCCATGTGTTTGAGTTTAGTTTGAGTTAGCAATGTTAGACTTAGAACAAAATATAAGGTCATTGATAAATTTTAAAAAATTCCGAGTTTGGTTACTGATTTGTCATTTGTTTGTTTTTGAAGAGGCAAGTAGGGTAGTGGATGTCGAAAATATGAAGCATATTGCAGAAGATAGGGTGACAATCGGAGATGAAGTGGAAAAGATAAATGAGGAGTGGAGTAATCAAAAGGAAATGTTATCTCAGCTTTTAGGAACAGACCAACTTCCTGGCATAACTCCTCATCCCAAGAGAAGAGAGAGACACGACGAGCTGCTTCCTGCTGATGAACAGCAGATTGGAGATGAATTGCAACACACAAGTTTCATGTCGCTTCTTATGGGCAACGAATCACCACCCACTAATGGGAATCTTCAACAGCCTCCTGGTGAAGAGGACCAAGATTATGACCTGGAGTATGCTAAGGATCTTGAATATCAATTATTTGGGGATATGTTGTAGTTCATGTTTTATATATTTAATATTTAATAGTATTTAATATTTGTGCCAAAGCAAGGTTTTATCATTGTTTTCAGGGCTGTAGATAATGATTCCAGTACTAAAGATATATTTACAAATTTCAATTTTGATCAATTATGTGGAAATATTACTTGTACTCAAAGCAAAT ATGGATTTTTCCTCGTTCAAGCTAGATCTGGATGAGCTCATAAACGAGTTTTCCGAGGGAGGGCTTAAAACTTTAGCAGACATGAAAAGATTGTGGCTTGGGCGGAAGTTTTCCTACATATTTGAGGCTCGGCCTTCTACCAGCTCCAACATATTTATGCAATTCCTGTACAGTCATTCTATAAGTCACATGATCTCCACTAATTCTGTGTCACAAAGATTGGGAGCCCTCTATGTCCTCTATTGTCTCTATGAGACTCAGCCATTCAAGCCCCCATTCAAGATTTATCTATCACTTGGAGAGTTACGAAGACTAAAAGCCCTGGTTGTAAATGCTAAAGAAAATGGAATCAAAATCGTATCTGTTTTGATCAAAAAGATGCTAGAGAAGAATGCATTCTTGTTTGGCTTTGTTAACATAAATGATTACTCTGAGAAAGAGAGGATAAAGGAGTTGGTAGATGTGCAGAATGCCTGTATAAAGAAGATGCATGAAAAATTGTTGGCGAACACTGAGATTGAGCGTTACCTTCATATGGACATGGGCATGGAACTTGATCTAGAAGTGCTCAGGAAAATGTCCGAAGAATATGAAGGAACTAAAAGTCTTGCTATCAGAGAGGCAAGTAGGGTAGTGGATGTCGAAAATATGAAGCATATTGCAGAAGATAGGGTGACAATCGGAGATGAAGTGGAAAAGATAAATGAGGAGTGGAGTAATCAAAAGGAAATGTTATCTCAGCTTTTAGGAACAGACCAACTTCCTGGCATAACTCCTCATCCCAAGAGAAGAGAGAGACACGACGAGCTGCTTCCTGCTGATGAACAGCAGATTGGAGATGAATTGCAACACACAAGTTTCATGTCGCTTCTTATGGGCAACGAATCACCACCCACTAATGGGAATCTTCAACAGCCTCCTGGTGAAGAGGACCAAGATTATGACCTGGAGTATGCTAAGGATCTTGAATATCAATTATTTGGGGATATGTTGTAGTTCATGTTTTATATATTTAATATTTAATAGTATTTAATATTTGTGCCAAAGCAAGGTTTTATCATTGTTTTCAGGGCTGTAGATAATGATTCCAGTACTAAAGATATATTTACAAATTTCAATTTTGATCAATTATGTGGAAATATTACTTGTACTCAAAGCAAAT ATGGATTTTTCCTCGTTCAAGCTAGATCTGGATGAGCTCATAAACGAGTTTTCCGAGGGAGGGCTTAAAACTTTAGCAGACATGAAAAGATTGTGGCTTGGGCGGAAGTTTTCCTACATATTTGAGGCTCGGCCTTCTACCAGCTCCAACATATTTATGCAATTCCTGTACAGTCATTCTATAAGTCACATGATCTCCACTAATTCTGTGTCACAAAGATTGGGAGCCCTCTATGTCCTCTATTGTCTCTATGAGACTCAGCCATTCAAGCCCCCATTCAAGATTTATCTATCACTTGGAGAGTTACGAAGACTAAAAGCCCTGGTTGTAAATGCTAAAGAAAATGGAATCAAAATCGTATCTGTTTTGATCAAAAAGATGCTAGAGAAGAATGCATTCTTGTTTGGCTTTGTTAACATAAATGATTACTCTGAGAAAGAGAGGATAAAGGAGTTGGTAGATGTGCAGAATGCCTGTATAAAGAAGATGCATGAAAAATTGTTGGCGAACACTGAGATTGAGCGTTACCTTCATATGGACATGGGCATGGAACTTGATCTAGAAGTGCTCAGGAAAATGTCCGAAGAATATGAAGGAACTAAAAGTCTTGCTATCAGAGAGGCAAGTAGGGTAGTGGATGTCGAAAATATGAAGCATATTGCAGAAGATAGGGTGACAATCGGAGATGAAGTGGAAAAGATAAATGAGGAGTGGAGTAATCAAAAGGAAATGTTATCTCAGCTTTTAGGAACAGACCAACTTCCTGGCATAACTCCTCATCCCAAGAGAAGAGAGAGACACGACGAGCTGCTTCCTGCTGATGAACAGCAGATTGGAGATGAATTGCAACACACAAGTTTCATGTCGCTTCTTATGGGCAACGAATCACCACCCACTAATGGGAATCTTCAACAGCCTCCTGGTGAAGAGGACCAAGATTATGACCTGGAGTATGCTAAGGATCTTGAATATCAATTATTTGGGGATATGTTGTAG MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHSISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIVSVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQPPGEEDQDYDLEYAKDLEYQLFGDML Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo20963.1 vs. NCBI nr
Match: gi|731353174|ref|XP_010687922.1| (PREDICTED: uncharacterized protein LOC104901982 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 454.9 bits (1169), Expect = 1.200e-124 Identity = 240/343 (69.97%), Postives = 276/343 (80.47%), Query Frame = 1
BLAST of Spo20963.1 vs. NCBI nr
Match: gi|902178169|gb|KNA09082.1| (hypothetical protein SOVF_156540 [Spinacia oleracea]) HSP 1 Score: 406.8 bits (1044), Expect = 3.700e-110 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1
BLAST of Spo20963.1 vs. NCBI nr
Match: gi|743816459|ref|XP_011020179.1| (PREDICTED: uncharacterized protein LOC105122642 isoform X2 [Populus euphratica]) HSP 1 Score: 324.7 bits (831), Expect = 1.900e-85 Identity = 168/317 (53.00%), Postives = 227/317 (71.61%), Query Frame = 1
BLAST of Spo20963.1 vs. NCBI nr
Match: gi|566174833|ref|XP_006381113.1| (hypothetical protein POPTR_0006s06470g [Populus trichocarpa]) HSP 1 Score: 323.9 bits (829), Expect = 3.200e-85 Identity = 168/317 (53.00%), Postives = 228/317 (71.92%), Query Frame = 1
BLAST of Spo20963.1 vs. NCBI nr
Match: gi|719981674|ref|XP_010250199.1| (PREDICTED: uncharacterized protein LOC104592497 isoform X2 [Nelumbo nucifera]) HSP 1 Score: 320.1 bits (819), Expect = 4.600e-84 Identity = 166/288 (57.64%), Postives = 214/288 (74.31%), Query Frame = 1
BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EIG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193760 PE=4 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 8.300e-125 Identity = 240/343 (69.97%), Postives = 276/343 (80.47%), Query Frame = 1
BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPA5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_156540 PE=4 SV=1) HSP 1 Score: 406.8 bits (1044), Expect = 2.600e-110 Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1
BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: U5G664_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06470g PE=4 SV=1) HSP 1 Score: 323.9 bits (829), Expect = 2.200e-85 Identity = 168/317 (53.00%), Postives = 228/317 (71.92%), Query Frame = 1
BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: D7TC57_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05760 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 4.300e-81 Identity = 163/284 (57.39%), Postives = 203/284 (71.48%), Query Frame = 1
BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: V4TH10_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032301mg PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 1.100e-79 Identity = 154/289 (53.29%), Postives = 209/289 (72.32%), Query Frame = 1
BLAST of Spo20963.1 vs. TAIR (Arabidopsis)
Match: AT3G53270.1 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein) HSP 1 Score: 237.7 bits (605), Expect = 1.100e-62 Identity = 123/271 (45.39%), Postives = 185/271 (68.27%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo20963.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo20963.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo20963.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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