Spo20997 (gene) | SpinachBase

Overview


Name	Spo20997
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L12
Location	chr1 : 42289457 .. 42289957 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTCTATGTCCGAGTGACCGGTGGCGAAGTCGGCGCTGCCTCCTCACTCGCTCCCAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAATAGGAGAAGACATTGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACTGTCCAAAACCGTCAGGCTAAAGTCAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCACTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCGAGATCTATGGCGAAAGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAACAGGAGATTGCTGATGATGAGGTTGAAATTCCTGAGAACTAA

mRNA sequence

ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTCTATGTCCGAGTGACCGGTGGCGAAGTCGGCGCTGCCTCCTCACTCGCTCCCAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAATAGGAGAAGACATTGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACTGTCCAAAACCGTCAGGCTAAAGTCAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCACTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCGAGATCTATGGCGAAAGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAACAGGAGATTGCTGATGATGAGGTTGAAATTCCTGAGAACTAA

Coding sequence (CDS)

ATGCCTCCAAAGCTCGACCCTTCCCAAGTTGTCGAAGTCTATGTCCGAGTGACCGGTGGCGAAGTCGGCGCTGCCTCCTCACTCGCTCCCAAGATCGGTCCCCTCGGTCTCTCCCCCAAGAAAATAGGAGAAGACATTGCCAAGGAAACCGCCAAGGACTGGAAGGGTCTCCGTGTCACCGTCAAGCTTACTGTCCAAAACCGTCAGGCTAAAGTCAGCGTTGTTCCTTCCGCCGCTGCTCTGGTTATCAAGGCACTGAAGGAGCCGGAGCGCGACCGCAAGAAGGTGAAGAACATCAAGCACACTGGTAACATCTCCATTGAGGACGTCATCGAGATTGCTAAGATTATGAAGCCGAGATCTATGGCGAAAGAATTGAAGGGCACTGTGAAGGAGATTCTGGGTACTTGTGTTTCTGTTGGGTGTACTGTTGATGGCAAGGATCCTAAGGATTTGCAACAGGAGATTGCTGATGATGAGGTTGAAATTCCTGAGAACTAA

Protein sequence

MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPRSMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo20997.1	Spo20997.1	mRNA

Homology

[Close]

BLAST of Spo20997.1 vs. NCBI nr
Match: gi|902217667|gb|KNA17853.1| (hypothetical protein SOVF_076720 [Spinacia oleracea])

HSP 1 Score: 318.9 bits (816), Expect = 5.100e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. NCBI nr
Match: gi|731356205|ref|XP_010689548.1| (PREDICTED: 60S ribosomal protein L12-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 307.0 bits (785), Expect = 2.000e-80
Identity = 156/166 (93.98%), Postives = 164/166 (98.80%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA+IMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQE+ D EVEIP+N
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEVEDGEVEIPDN 166

[Close]

BLAST of Spo20997.1 vs. NCBI nr
Match: gi|731345787|ref|XP_010684100.1| (PREDICTED: 60S ribosomal protein L12-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 303.5 bits (776), Expect = 2.200e-79
Identity = 153/166 (92.17%), Postives = 163/166 (98.19%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA++MKPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARVMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDG DPKDLQQE+ D EVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGSDPKDLQQEVEDGEVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. NCBI nr
Match: gi|976902840|gb|KVH90774.1| (Ribosomal protein L11 [Cynara cardunculus var. scolymus])

HSP 1 Score: 302.8 bits (774), Expect = 3.800e-79
Identity = 154/166 (92.77%), Postives = 164/166 (98.80%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK DPSQVV+VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKH+GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIAKVMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKEL+GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIP++
Sbjct: 121 SMAKELQGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]

BLAST of Spo20997.1 vs. NCBI nr
Match: gi|40287508|gb|AAR83868.1| (60S ribosomal protein L12 [Capsicum annuum])

HSP 1 Score: 302.0 bits (772), Expect = 6.500e-79
Identity = 154/166 (92.77%), Postives = 162/166 (97.59%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQVVEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKVDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKK KNIKH GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMQPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAK+L GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIPEN
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S456_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002290 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 3.600e-84
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQ55_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g207930 PE=3 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.400e-80
Identity = 156/166 (93.98%), Postives = 164/166 (98.80%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+VEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA+IMKPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARIMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQE+ D EVEIP+N
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEVEDGEVEIPDN 166

[Close]

BLAST of Spo20997.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2D9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g162160 PE=3 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 1.600e-79
Identity = 153/166 (92.17%), Postives = 163/166 (98.19%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQ+V+V+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKIDPSQIVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKHTGNIS++DVIEIA++MKPR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHTGNISLDDVIEIARVMKPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKELKGTVKEILGTCVSVGCTVDG DPKDLQQE+ D EVEIPEN
Sbjct: 121 SMAKELKGTVKEILGTCVSVGCTVDGSDPKDLQQEVEDGEVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. UniProtKB/TrEMBL
Match: A0A118JTH4_CYNCS (Ribosomal protein L11 OS=Cynara cardunculus var. scolymus GN=Ccrd_007216 PE=3 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 2.700e-79
Identity = 154/166 (92.77%), Postives = 164/166 (98.80%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK DPSQVV+VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKH+GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIAKVMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAKEL+GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIP++
Sbjct: 121 SMAKELQGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD 166

[Close]

BLAST of Spo20997.1 vs. UniProtKB/TrEMBL
Match: Q6RJY1_CAPAN (60S ribosomal protein L12 OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 4.500e-79
Identity = 154/166 (92.77%), Postives = 162/166 (97.59%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK+DPSQVVEV+VRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT
Sbjct: 1   MPPKVDPSQVVEVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKK KNIKH GNIS++DVIEIAK+M+PR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKVMQPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           SMAK+L GTVKEILGTCVSVGCTVDGKDPKDLQQEIAD +VEIPEN
Sbjct: 121 SMAKDLSGTVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. ExPASy Swiss-Prot
Match: RL121_ARATH (60S ribosomal protein L12-1 OS=Arabidopsis thaliana GN=RPL12A PE=2 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 6.500e-79
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKD+QQEI D EVEIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. ExPASy Swiss-Prot
Match: RL122_ARATH (60S ribosomal protein L12-2 OS=Arabidopsis thaliana GN=RPL12B PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.400e-78
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKDLQQEI + E+EIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of Spo20997.1 vs. ExPASy Swiss-Prot
Match: RL12_PRUAR (60S ribosomal protein L12 OS=Prunus armeniaca GN=RPL12 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.200e-78
Identity = 151/164 (92.07%), Postives = 157/164 (95.73%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPK DPSQVV+VYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETA DWKGLRVT
Sbjct: 1   MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETANDWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKK KNIKH+G+IS++DVIEIAKIMK R
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHSGHISLDDVIEIAKIMKHR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIP 165
           SMAKEL GTVKEIL TCVSVGCTVDGKDPKDLQQEIAD +VEIP
Sbjct: 121 SMAKELAGTVKEILRTCVSVGCTVDGKDPKDLQQEIADGDVEIP 164

[Close]

BLAST of Spo20997.1 vs. ExPASy Swiss-Prot
Match: RL123_ARATH (60S ribosomal protein L12-3 OS=Arabidopsis thaliana GN=RPL12C PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.100e-77
Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DVIEIAKIM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIP 165
           S+AKEL GTVKEILGTCVSVGCTVDGKDPKDLQ+EI   +++IP
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164

[Close]

BLAST of Spo20997.1 vs. ExPASy Swiss-Prot
Match: RL12_CHLRE (60S ribosomal protein L12 (Fragment) OS=Chlamydomonas reinhardtii GN=RPL12 PE=2 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.200e-61
Identity = 121/156 (77.56%), Postives = 137/156 (87.82%), Query Frame = 1

		  
Query: 10  VVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQ 69
           VVEV VRVTGGEVG ASSLAPKIGPLGLSPKKIGEDIAKET KDWKGLR+TVKLTVQNRQ
Sbjct: 1   VVEVCVRVTGGEVGDASSLAPKIGPLGLSPKKIGEDIAKETLKDWKGLRITVKLTVQNRQ 60

Query: 70  AKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPRSMAKELKGT 129
           AK+SV+PSAAALVIKALKEP RDRKK KNIKHTG++++ D+IEIA++M+PRS AK+L   
Sbjct: 61  AKISVIPSAAALVIKALKEPARDRKKEKNIKHTGSVTMSDIIEIARVMRPRSCAKDLANG 120

Query: 130 VKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPE 166
            KEILGT VSVGC VDGKDP+D+   I D  +EIP+
Sbjct: 121 CKEILGTAVSVGCKVDGKDPRDVISAIDDGAIEIPD 156

[Close]

BLAST of Spo20997.1 vs. TAIR (Arabidopsis)
Match: AT2G37190.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 294.7 bits (753), Expect = 3.700e-80
Identity = 149/166 (89.76%), Postives = 160/166 (96.39%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKD+QQEI D EVEIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDIQQEIQDGEVEIPEN 166

[Close]

BLAST of Spo20997.1 vs. TAIR (Arabidopsis)
Match: AT3G53430.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 293.5 bits (750), Expect = 8.100e-80
Identity = 148/166 (89.16%), Postives = 160/166 (96.39%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DV EIA+IM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIPEN 167
           S+AKEL GTV+EILGTCVSVGCTVDGKDPKDLQQEI + E+EIPEN
Sbjct: 121 SIAKELSGTVREILGTCVSVGCTVDGKDPKDLQQEIQEGEIEIPEN 166

[Close]

BLAST of Spo20997.1 vs. TAIR (Arabidopsis)
Match: AT5G60670.1 (Ribosomal protein L11 family protein)

HSP 1 Score: 289.7 bits (740), Expect = 1.200e-78
Identity = 146/164 (89.02%), Postives = 158/164 (96.34%), Query Frame = 1

		  
Query: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
           MPPKLDPSQ+V+VYVRVTGGEVGAASSLAPKIGPLGL+PKKIGEDIAKETAK+WKGLRVT
Sbjct: 1   MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60

Query: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHTGNISIEDVIEIAKIMKPR 120
           VKLTVQNRQAKV+VVPSAAALVIKALKEPERDRKKVKNIKH GNIS +DVIEIAKIM+PR
Sbjct: 61  VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120

Query: 121 SMAKELKGTVKEILGTCVSVGCTVDGKDPKDLQQEIADDEVEIP 165
           S+AKEL GTVKEILGTCVSVGCTVDGKDPKDLQ+EI   +++IP
Sbjct: 121 SIAKELSGTVKEILGTCVSVGCTVDGKDPKDLQEEINSGDIDIP 164

The following BLAST results are available for this feature:

BLAST of Spo20997.1 vs. NCBI nr
BLAST of Spo20997.1 vs. UniProtKB/TrEMBL
BLAST of Spo20997.1 vs. ExPASy Swiss-Prot
BLAST of Spo20997.1 vs. TAIR (Arabidopsis)

BLAST of Spo20997.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902217667\|gb\|KNA17853.1\|	5.1e-84	100.	hypothetical protein SOVF_0767...	[more]
gi\|731356205\|ref\|XP_010689548.1\|	2.0e-80	93.9	PREDICTED: 60S ribosomal prote...	[more]
gi\|731345787\|ref\|XP_010684100.1\|	2.2e-79	92.1	PREDICTED: 60S ribosomal prote...	[more]
gi\|976902840\|gb\|KVH90774.1\|	3.8e-79	92.7	Ribosomal protein L11 [Cynara ...	[more]
gi\|40287508\|gb\|AAR83868.1\|	6.5e-79	92.7	60S ribosomal protein L12 [Cap...	[more]

BLAST of Spo20997.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9S456_SPIOL	3.6e-84	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BQ55_BETVU	1.4e-80	93.9	Uncharacterized protein OS=Bet...	[more]
A0A0J8C2D9_BETVU	1.6e-79	92.1	Uncharacterized protein OS=Bet...	[more]
A0A118JTH4_CYNCS	2.7e-79	92.7	Ribosomal protein L11 OS=Cynar...	[more]
Q6RJY1_CAPAN	4.5e-79	92.7	60S ribosomal protein L12 OS=C...	[more]

BLAST of Spo20997.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RL121_ARATH	6.5e-79	89.7	60S ribosomal protein L12-1 OS...	[more]
RL122_ARATH	1.4e-78	89.1	60S ribosomal protein L12-2 OS...	[more]
RL12_PRUAR	7.2e-78	92.0	60S ribosomal protein L12 OS=P...	[more]
RL123_ARATH	2.1e-77	89.0	60S ribosomal protein L12-3 OS...	[more]
RL12_CHLRE	1.2e-61	77.5	60S ribosomal protein L12 (Fra...	[more]

BLAST of Spo20997.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G37190.1	3.7e-80	89.7	Ribosomal protein L11 family p...	[more]
AT3G53430.1	8.1e-80	89.1	Ribosomal protein L11 family p...	[more]
AT5G60670.1	1.2e-78	89.0	Ribosomal protein L11 family p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000911	Ribosomal protein L11/L12	HAMAP	MF_00736	Ribosomal_L11	coord: 9..146 score: 1
IPR000911	Ribosomal protein L11/L12	PANTHER	PTHR11661	60S RIBOSOMAL PROTEIN L12	coord: 1..166 score: 2.4E
IPR000911	Ribosomal protein L11/L12	SMART	SM00649	rl11c	coord: 13..145 score: 6.6
IPR020783	Ribosomal protein L11, C-terminal	GENE3D	1.10.10.250		coord: 82..145 score: 4.2
IPR020783	Ribosomal protein L11, C-terminal	PFAM	PF00298	Ribosomal_L11	coord: 75..144 score: 3.0
IPR020783	Ribosomal protein L11, C-terminal	unknown	SSF46906	Ribosomal protein L11, C-terminal domain	coord: 76..149 score: 9.81
IPR020784	Ribosomal protein L11, N-terminal	GENE3D	3.30.1550.10		coord: 1..81 score: 4.8
IPR020784	Ribosomal protein L11, N-terminal	PFAM	PF03946	Ribosomal_L11_N	coord: 13..70 score: 9.3
IPR020784	Ribosomal protein L11, N-terminal	unknown	SSF54747	Ribosomal L11/L12e N-terminal domain	coord: 1..87 score: 1.02
IPR020785	Ribosomal protein L11, conserved site	PROSITE	PS00359	RIBOSOMAL_L11	coord: 131..146 scor
None	No IPR available	PANTHER	PTHR11661:SF6	SUBFAMILY NOT NAMED	coord: 1..166 score: 2.4E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0051258	protein polymerization
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0009809	lignin biosynthetic process
biological_process	GO:0006555	methionine metabolic process
biological_process	GO:0006730	one-carbon metabolic process
biological_process	GO:0006556	S-adenosylmethionine biosynthetic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0006086	acetyl-CoA biosynthetic process from pyruvate
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0006421	asparaginyl-tRNA aminoacylation
biological_process	GO:0006531	aspartate metabolic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0006020	inositol metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0015976	carbon utilization
biological_process	GO:0051301	cell division
biological_process	GO:0048825	cotyledon development
biological_process	GO:0009880	embryonic pattern specification
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0019915	lipid storage
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0010072	primary shoot apical meristem specification
biological_process	GO:0010564	regulation of cell cycle process
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0045595	regulation of cell differentiation
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0050826	response to freezing
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0007062	sister chromatid cohesion
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0006099	tricarboxylic acid cycle
biological_process	GO:0006412	translation
biological_process	GO:0008283	cell proliferation
biological_process	GO:0006000	fructose metabolic process
biological_process	GO:0006013	mannose metabolic process
biological_process	GO:0019877	diaminopimelate biosynthetic process
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009186	deoxyribonucleoside diphosphate metabolic process
biological_process	GO:0009202	deoxyribonucleoside triphosphate biosynthetic process
biological_process	GO:0009263	deoxyribonucleotide biosynthetic process
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0045038	protein import into chloroplast thylakoid membrane
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0009637	response to blue light
biological_process	GO:0010218	response to far red light
biological_process	GO:0010114	response to red light
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0006306	DNA methylation
biological_process	GO:0006270	DNA replication initiation
biological_process	GO:0006268	DNA unwinding involved in DNA replication
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0006275	regulation of DNA replication
biological_process	GO:0010389	regulation of G2/M transition of mitotic cell cycle
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0006949	syncytium formation
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0050687	negative regulation of defense response to virus
biological_process	GO:0006833	water transport
biological_process	GO:0048767	root hair elongation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0080001	mucilage extrusion from seed coat
biological_process	GO:0048359	mucilage metabolic process involved in seed coat development
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0006508	proteolysis
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0006529	asparagine biosynthetic process
biological_process	GO:0006207	'de novo' pyrimidine nucleobase biosynthetic process
biological_process	GO:0044205	'de novo' UMP biosynthetic process
biological_process	GO:0006084	acetyl-CoA metabolic process
biological_process	GO:0016132	brassinosteroid biosynthetic process
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0009932	cell tip growth
biological_process	GO:0071555	cell wall organization
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0007018	microtubule-based movement
biological_process	GO:0009825	multidimensional cell growth
biological_process	GO:0000271	polysaccharide biosynthetic process
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0009409	response to cold
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006165	nucleoside diphosphate phosphorylation
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006544	glycine metabolic process
biological_process	GO:0000478	endonucleolytic cleavage involved in rRNA processing
biological_process	GO:0006414	translational elongation
biological_process	GO:0000466	maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0006228	UTP biosynthetic process
biological_process	GO:0009585	red, far-red light phototransduction
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0009089	lysine biosynthetic process via diaminopimelate
biological_process	GO:0016310	phosphorylation
biological_process	GO:0001731	formation of translation preinitiation complex
biological_process	GO:0051604	protein maturation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006183	GTP biosynthetic process
biological_process	GO:0006241	CTP biosynthetic process
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0008356	asymmetric cell division
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0009116	nucleoside metabolic process
biological_process	GO:0007389	pattern specification process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006563	L-serine metabolic process
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009086	methionine biosynthetic process
biological_process	GO:0006396	RNA processing
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0001510	RNA methylation
biological_process	GO:0008033	tRNA processing
biological_process	GO:0016579	protein deubiquitination
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0016571	histone methylation
biological_process	GO:0006457	protein folding
biological_process	GO:0006364	rRNA processing
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006164	purine nucleotide biosynthetic process
biological_process	GO:0009088	threonine biosynthetic process
biological_process	GO:0009408	response to heat
biological_process	GO:0006783	heme biosynthetic process
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0034976	response to endoplasmic reticulum stress
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0045254	pyruvate dehydrogenase complex
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0016282	eukaryotic 43S preinitiation complex
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0005829	cytosol
cellular_component	GO:0080085	signal recognition particle, chloroplast targeting
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0005654	nucleoplasm
cellular_component	GO:0080008	Cul4-RING E3 ubiquitin ligase complex
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
cellular_component	GO:0016020	membrane
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005853	eukaryotic translation elongation factor 1 complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005773	vacuole
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0048046	apoplast
cellular_component	GO:0016459	myosin complex
cellular_component	GO:0044424	intracellular part
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005845	mRNA cap binding complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0030880	RNA polymerase complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0000785	chromatin
cellular_component	GO:0042555	MCM complex
cellular_component	GO:0046809	replication compartment
cellular_component	GO:0005657	replication fork
cellular_component	GO:0005852	eukaryotic translation initiation factor 3 complex
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005971	ribonucleoside-diphosphate reductase complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0000786	nucleosome
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0033290	eukaryotic 48S preinitiation complex
molecular_function	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
molecular_function	GO:0004749	ribose phosphate diphosphokinase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0031369	translation initiation factor binding
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004871	obsolete signal transducer activity
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003688	DNA replication origin binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0004816	asparagine-tRNA ligase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0070402	NADPH binding
molecular_function	GO:0004455	ketol-acid reductoisomerase activity
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004550	nucleoside diphosphate kinase activity
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0042277	peptide binding
molecular_function	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity
molecular_function	GO:0004478	methionine adenosyltransferase activity
molecular_function	GO:0016905	myosin heavy chain kinase activity
molecular_function	GO:0004073	aspartate-semialdehyde dehydrogenase activity
molecular_function	GO:0003942	N-acetyl-gamma-glutamyl-phosphate reductase activity
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0050661	NADP binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0009982	pseudouridine synthase activity
molecular_function	GO:0008840	4-hydroxy-tetrahydrodipicolinate synthase
molecular_function	GO:0030515	snoRNA binding
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0004590	orotidine-5'-phosphate decarboxylase activity
molecular_function	GO:0004588	orotate phosphoribosyltransferase activity
molecular_function	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0004332	fructose-bisphosphate aldolase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0008483	transaminase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0042286	glutamate-1-semialdehyde 2,1-aminomutase activity
molecular_function	GO:0043021	ribonucleoprotein complex binding
molecular_function	GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity
molecular_function	GO:0000340	RNA 7-methylguanosine cap binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05064	0.87	Barchart \| Table
Spo07145	0.85	Barchart \| Table
Spo20647	0.85	Barchart \| Table
Spo13481	0.85	Barchart \| Table
Spo19236	0.84	Barchart \| Table
Spo10599	0.84	Barchart \| Table
Spo12311	0.84	Barchart \| Table
Spo13279	0.84	Barchart \| Table
Spo02380	0.83	Barchart \| Table
Spo12304	0.83	Barchart \| Table
Spo26884	0.83	Barchart \| Table
Spo22394	0.82	Barchart \| Table
Spo10147	0.82	Barchart \| Table
Spo17662	0.82	Barchart \| Table
Spo04381	0.82	Barchart \| Table
Spo17271	0.81	Barchart \| Table
Spo01061	0.81	Barchart \| Table
Spo23038	0.81	Barchart \| Table
Spo21655	0.81	Barchart \| Table
Spo25635	0.80	Barchart \| Table
Spo18901	0.80	Barchart \| Table
Spo23220	0.80	Barchart \| Table
Spo05783	0.80	Barchart \| Table
Spo23498	0.79	Barchart \| Table
Spo07920	0.79	Barchart \| Table
Spo02942	0.79	Barchart \| Table
Spo04667	0.79	Barchart \| Table
Spo23241	0.79	Barchart \| Table
Spo10597	0.78	Barchart \| Table
Spo11850	0.78	Barchart \| Table
Spo02397	0.78	Barchart \| Table
Spo05589	0.78	Barchart \| Table
Spo06318	0.78	Barchart \| Table
Spo14875	0.78	Barchart \| Table
Spo08768	0.78	Barchart \| Table
Spo17903	0.77	Barchart \| Table
Spo18094	0.77	Barchart \| Table
Spo12048	0.77	Barchart \| Table
Spo00363	0.77	Barchart \| Table
Spo08816	0.77	Barchart \| Table
Spo25669	0.76	Barchart \| Table
Spo21186	0.76	Barchart \| Table
Spo12191	0.76	Barchart \| Table
Spo08691	0.76	Barchart \| Table
Spo07402	0.75	Barchart \| Table
Spo21922	0.75	Barchart \| Table
Spo07223	0.75	Barchart \| Table
Spo15604	0.75	Barchart \| Table
Spo15150	0.75	Barchart \| Table
Spo01999	0.75	Barchart \| Table
Spo08961	0.75	Barchart \| Table
Spo12759	0.75	Barchart \| Table
Spo20161	0.74	Barchart \| Table
Spo20789	0.74	Barchart \| Table
Spo15939	0.74	Barchart \| Table
Spo14404	0.74	Barchart \| Table
Spo12681	0.74	Barchart \| Table
Spo19200	0.74	Barchart \| Table
Spo02011	0.73	Barchart \| Table
Spo26442	0.73	Barchart \| Table
Spo07417	0.73	Barchart \| Table
Spo10390	0.73	Barchart \| Table
Spo06002	0.73	Barchart \| Table
Spo25101	0.73	Barchart \| Table
Spo25306	0.73	Barchart \| Table
Spo07668	0.72	Barchart \| Table
Spo07016	0.72	Barchart \| Table
Spo04755	0.72	Barchart \| Table
Spo18647	0.72	Barchart \| Table
Spo25176	0.72	Barchart \| Table
Spo06904	0.72	Barchart \| Table
Spo14692	0.72	Barchart \| Table
Spo11679	0.72	Barchart \| Table
Spo23622	0.72	Barchart \| Table
Spo00170	0.71	Barchart \| Table
Spo01092	0.71	Barchart \| Table
Spo02928	0.71	Barchart \| Table
Spo03527	0.71	Barchart \| Table
Spo04454	0.71	Barchart \| Table
Spo05632	0.71	Barchart \| Table
Spo06501	0.71	Barchart \| Table
Spo15711	0.71	Barchart \| Table
Spo15751	0.71	Barchart \| Table
Spo18370	0.71	Barchart \| Table
Spo19352	0.71	Barchart \| Table
Spo19970	0.71	Barchart \| Table
Spo26636	0.71	Barchart \| Table
Spo06331	0.70	Barchart \| Table
Spo05244	0.70	Barchart \| Table
Spo02838	0.70	Barchart \| Table
Spo08258	0.70	Barchart \| Table
Spo14874	0.70	Barchart \| Table
Spo24902	0.70	Barchart \| Table
Spo07821	0.70	Barchart \| Table
Spo24703	0.70	Barchart \| Table
Spo24395	0.70	Barchart \| Table
Spo16033	0.70	Barchart \| Table
Spo16627	0.70	Barchart \| Table
Spo03626	0.70	Barchart \| Table
Spo07017	0.70	Barchart \| Table
Spo03802	0.70	Barchart \| Table
Spo06857	0.70	Barchart \| Table
Spo06742	0.70	Barchart \| Table
Spo22310	0.70	Barchart \| Table
Spo18532	0.70	Barchart \| Table
Spo05909	0.70	Barchart \| Table
Spo25954	0.70	Barchart \| Table
Spo02218	0.70	Barchart \| Table
Spo05694	0.69	Barchart \| Table
Spo07432	0.69	Barchart \| Table
Spo26488	0.69	Barchart \| Table
Spo01086	0.69	Barchart \| Table
Spo08950	0.69	Barchart \| Table
Spo12598	0.69	Barchart \| Table
Spo23193	0.69	Barchart \| Table
Spo14380	0.69	Barchart \| Table
Spo11288	0.69	Barchart \| Table
Spo07075	0.69	Barchart \| Table
Spo04208	0.69	Barchart \| Table
Spo17929	0.69	Barchart \| Table
Spo11943	0.69	Barchart \| Table
Spo22401	0.69	Barchart \| Table
Spo06706	0.69	Barchart \| Table
Spo15438	0.69	Barchart \| Table
Spo04390	0.68	Barchart \| Table
Spo13561	0.68	Barchart \| Table
Spo08488	0.68	Barchart \| Table
Spo08082	0.68	Barchart \| Table
Spo27105	0.68	Barchart \| Table
Spo19439	0.68	Barchart \| Table
Spo03979	0.68	Barchart \| Table
Spo02989	0.68	Barchart \| Table
Spo23681	0.68	Barchart \| Table
Spo25065	0.68	Barchart \| Table
Spo02534	0.68	Barchart \| Table
Spo01035	0.68	Barchart \| Table
Spo11026	0.68	Barchart \| Table
Spo18719	0.67	Barchart \| Table
Spo17495	0.67	Barchart \| Table
Spo16749	0.67	Barchart \| Table
Spo19441	0.67	Barchart \| Table
Spo27154	0.67	Barchart \| Table
Spo03675	0.67	Barchart \| Table
Spo09353	0.67	Barchart \| Table
Spo12064	0.67	Barchart \| Table
Spo27223	0.67	Barchart \| Table
Spo12516	0.67	Barchart \| Table
Spo11592	0.67	Barchart \| Table
Spo00525	0.67	Barchart \| Table
Spo16693	0.66	Barchart \| Table
Spo14447	0.66	Barchart \| Table
Spo13288	0.66	Barchart \| Table
Spo15961	0.66	Barchart \| Table
Spo09714	0.66	Barchart \| Table
Spo12193	0.66	Barchart \| Table
Spo09146	0.66	Barchart \| Table
Spo19440	0.66	Barchart \| Table
Spo00780	0.66	Barchart \| Table
Spo18505	0.66	Barchart \| Table
Spo06282	0.66	Barchart \| Table
Spo05461	0.66	Barchart \| Table
Spo03701	0.66	Barchart \| Table
Spo25266	0.66	Barchart \| Table
Spo05547	0.65	Barchart \| Table
Spo21375	0.65	Barchart \| Table
Spo17653	0.65	Barchart \| Table
Spo15132	0.65	Barchart \| Table
Spo24918	0.65	Barchart \| Table
Spo25158	0.65	Barchart \| Table
Spo25206	0.65	Barchart \| Table
Spo14063	0.65	Barchart \| Table
Spo06136	0.65	Barchart \| Table
Spo19413	0.65	Barchart \| Table