Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCTTTACCAAATATTCCTGCTTTTCAGTTTCTGTTTTCTCTATGATAATCAGTTTTTTAACTGCACTATTCCTTCTTGTTTTTTTCTCTTGATTTTCTCTCATTTACAGCTCCCAAAACCCTAAAAATTTGCATTGTTTCAGACGCCGGAATATGGGCGATAATTCCCCACAATTCGATATAAATCAGTTACTATCTTACTGCAATGACCTTGTTGAGGTTCTTAGAGACGACACAGACTTCAACATGTTGAGCCATTGTGTTCAGCTAGGCGAATCCATCCAATCGTCTTCTGATTCCGATTTCAACTCTAACCAGATCGCCATTTCAGGTTTGTCTTTGTTAATTTTATTGTTTTTTCATTTGAATTCATATTGGGTTATCATATAAATTTCTGGGATTTTGTTAAATTTTCAGTGAATTAGGTTTTCAAAATCAAAATTATACCGCCCTTTTAATATAAGGAATTTTGGTGCTTTATGATAATTAAGGTTGAATTCTGACTAATATTTTATGAGATGGCATCAAATTTCAGATGTTTTGTTTACCAGATTATGATATTGTTCTGTTTAGTGATAATAATGATGGGCTTCCAATGCGTTTGCATATTTTATATTTTGTCTGACTTTGGTTCACATCTTAAGAGCCTTTTTAGCCTTTTCTATGTCCCCCCTTTCAATGCGTTTGATGGAGTATTTAGCATGGATTTTCTAGACATCATTAGCTCCGAACACTTTAAATTTCTTATATGCACCCAAGAATAAAATGATGTCTCTTTTAGGCGTTTGGAAGTTGTGGTTTTTATATAATGTGAAGGTGTGTTTGTCCTATATCCTTTGTTCTTTGAAGCTGGATGGTTGAGTATGGACTGAGGGACAACACATTGCCTTCGACGTTTGAGTAGGGTTACAATTTACTTGAACATTATGGTTTCATATTAGTGTCACTTATTGAGGAGTTTGGATATCAGTTTCGTTCGAATTTGTATGCAACAGTTGGAACCATTCGCATATGAGTAACACTGTGACTTGACTGTGAAACTGTAGTCTTTTAGTTTGTTTTCCACTAACACTTCTCTAACCAAGGACTCAAATTTCCATCGAGGAAATAGCCTATGTGCATGTTATGGTTGCCTAAATGTGAATGTCAGCAGAACCCTTGTACTGCACGAGGTTGATGTTATTCCATATGAAAATCCATGTTCCATATTCTCATAAACTTTTGATGGACTGTCTACCCCTTTAGACCCACTGCTTGCATAGATAGTTTTCTGACTTTTCTCAAAAGATTAAACTGAACCCTGTTGTTCACATGTGCTTTATAACATTTTTACAATAATCTTTCACTTGATCTTTAAGTAAGGTTAGTTTCAAGTCATGTTAAAGATGTTTTTCAGTTTCGCACTTTCTCTTGTTGAGAAAAAAATTATATGCTCTCTCCTTCTAAAGCCGAAATGTTCAGGTCTTTGTGTGTGTGACGTACAAATAAAGCAGTTCCCTGTATATACATATAAATATGTATATATCGCAGTGGACAACAATCTTTATGTATGTCTTATTATAGTGCTTTAAATGTCTCTGCTTTTTTCTTCCACCTTGATGTCCTTGAAGAAGTTGTTTCTTATGCTGATGAACATATTCACACTTTCCTTAGATTATCAGAAAAAGATAGATGACTGCAAGCACAAAATAGAAATGGCGCGATCTGAAGTAGTTTCCGATGAAGAAATAGAGCGCCTTCAGAAGGAGCTTGATGTGCAACTCAAGAGAGAGAAGCAGCTTCGAGAGGATCTTAAATAAGTATCCAGTTTTGGCAGTTATGTGCTAGTCCTTTTGTTGGTTTTCTTTTCGCTGGTCTGATTAATTATTCATTATATGAACACAGTAATTGATGACGATATTAACGAACTAGATCATCAGCGGCTTTCATTAGAGGACCGGAGTCAGAGGCTGAGGAAACTTGAAGAAGAACAAGATAAAGAACTGTAAGTATAACTGTGCTAGAGAATAATGTGTTTACGGAGTACTAGTTTGCAACGCTTCCCAGGAATAACTTCATACACAAAAAAATGACATGTTTTGAAAGTGCACGTTGTTTATATGCTTGTATGTTTAAACTTTGTGGCAAGAAGCCAAAAACTATTGAAGTTAACTGACTCACCAATTTATTCTCTATGGTCTATGAATTCAGTTTAAATGGGTTGCCCTTATGATGAGCAGAATACCCATATTAATTATTCTGCATTTCAGCTTTATTTGATTGATTTTGTTCACACATGCTCTTTAGTGCATAGTTGAGTCTTTGCTTAATCTTTTTTTCCAAGTAATATGGATACCAGATTACCAGTAGAAAGGCTCTAGGTTATAAAGGCTAGAAGTATTTGGGGCTTACATGATGAGTGAGAGAATCAATTTCAAGTATTATTCTAGTATAATAGAGTTCGGGTTATCAGTTGCCTTTCAGTTAGAAAGGTATTTTATTTGATGTTTTTGTTACGTAGAAAGAGGCACGGCTCTGTTGATTAGTCAGTTTTAATGTCTAGAGCTATGTGTAGCTAAGAGTCACAATTTCCATCATTTGGGCAAGTGCTTCTTTTGGCCTTGTTGGGTATGGCAGTAAATCATACTCAAAGGTCAAAACAAAGTTCATAATGAAGATTCTTGGGTATAGCCATACTGCTTCCAAGGAAGAGGAAATTCATAATGAAGATTGTTTTATTGTAAATTGCTATCACTGCCTTTGGTTGCACTTAAATTTCTCTTTTCCTAACATAAGAATTATATGTTGTTGCAGGAGCAAACTTCAATTATATGCATCTGTCACAAAGGTTATTCCCAATCTGGACAGCCCAGCAGATACTGGCCGTATCCTTATTTATAGCAAAATTACATCTTGGATATATCTTTGTATATTTTCTGCATATACCCCCTGATCTTTTCTGTTCTCGACACAATGTTTTCTGCCTGTTTTGTGCTGTCTATAATATGCTACCTATAATATGTGCTGTTTTGTGCTGTCTATAATATGTTCTCCACACTATCTTTTGGCAAATTTGTTGCACCTTGATATGGTTTCCAGATATTGTGGACCGTGATAAAAACACAGTAGAGAGGTTTGAATTTGATCCATTGCAGGAAGATGCGTTTGACATATGCAACAAGATTTGGAAGATGATCGACCGTTAACTGTTTCCGTGGAACAACATTTGACAAGTAGGTTTGGTTCAAGTCATTTTCCTTGTTCTCTTTCTTTAATTTTGATGATATGTTCTCTTGGTTCACTGTAGTAAGAGATTTGCAGAGTGAAATCTGCACTCATGGGAGAATTGAAAGCCATCCTTGTTGGCCTTCAAATTCTTCGTCAGAAAGATTGGAAAACTATCAGTGTGTTCGGATTCGAAACTAGCAGTGGAGTATATTCTTAATGCTTCAATTGCTAAAGATGAAAACTATTTACTTGTGGCAAATTGCAGGGAGTTGATTTTGCAAATGCCGGGTATTAGAGTGGAACATGACGGAAGAGAGACGATGATTGTTTAGAGCAAATCCGGATTGTAATCTTAATAGACTAGTTCTTGAACAAGCTCCTTCTTTTGTTATGTCTGTACTTATGTAGGACAAACCTCCCTGACTTGTATTTGGTTTAATCTAATTTGCATCGAAAACAAAATTAAGAGATTTGCACGAAAATGATGAACCCAAAAACAAAAAAATGTATTTCATTGCAATTTGCTAAAGAACTCACAGTTGTCCTTGTTATATTATCTGATGTTTTAAACAACAGCTAACATATGGGAAATAGAACGTGTTTACAAGCTAAGATGACTATTAGGCCAAGCCTTAAACGCCTTTTGCCTTGTGAAAGATAAAAACTGTTGAATTTTAGTGCTTTAGTTTGGCTCTTTCAGCTGAACACTTGACTATTTTGCTGTAGAATTTCAGTTGGCACAAAAGAGGTCAAGTTCTGGTTGCCTCCTACGTAGCACATCTGCTGAAATGCATCTGTTGCGTCGTTTCCAAATGAGTTGATCATGAACTCAGCTGAACTACAAGCTGCAGGAACTGATGACCCTCTGTACTCTCTGCAGATGTACGCAATGAAGTTTTGGTAGTCCTGCAAACCACCCAACAGTAAAACACGGTGTAGCAGATCAACAAAGAAGAAAGTGAGCGAAAACACGGTGTAGCAGATCAACAAAGAAAGAAGAAAGTGAGCGAGTGAGGGGTTTAAAGTTTAAACCTGGCGGAGTGGCTGATTGTTGACAAGCACCCATGGCACATACGCGTGAGGTGGGTTTAGCTGACTAGTTTCATATGCATATTGTAACTCAAGCTGCAGAAAAATCATTCAACATGCTTATTAATAGATGTTGGGCCAGTTTATACCAGTAAAAAAAGGATAGGAACAGATCAGTAACTTTACCCTTCCACCATTTCCCTGATTGTAGCAGTCGAAAATAGGCTTGGAGTCAAGTGATACTTGATCAAAGCAACTTTGCCACTCTGCTTCTCTGTTTTGATAGGCCAAACTCTCAATGCATTGAATCATGAAATAGTGTTTGTACTGCCACAAATAATAC ATCTTTACCAAATATTCCTGCTTTTCAGTTTCTGTTTTCTCTATGATAATCAGTTTTTTAACTGCACTATTCCTTCTTGTTTTTTTCTCTTGATTTTCTCTCATTTACAGCTCCCAAAACCCTAAAAATTTGCATTGTTTCAGACGCCGGAATATGGGCGATAATTCCCCACAATTCGATATAAATCAGTTACTATCTTACTGCAATGACCTTGTTGAGGTTCTTAGAGACGACACAGACTTCAACATGTTGAGCCATTGTGTTCAGCTAGGCGAATCCATCCAATCGTCTTCTGATTCCGATTTCAACTCTAACCAGATCGCCATTTCAGATTATCAGAAAAAGATAGATGACTGCAAGCACAAAATAGAAATGGCGCGATCTGAAGTAGTTTCCGATGAAGAAATAGAGCGCCTTCAGAAGGAGCTTGATGTGCAACTCAAGAGAGAGAAGCAGCTTCGAGAGGATCTTAAAGTAATTGATGACGATATTAACGAACTAGATCATCAGCGGCTTTCATTAGAGGACCGGAGTCAGAGGCTGAGGAAACTTGAAGAAGAACAAGATAAAGAACTGAGCAAACTTCAATTATATGCATCTGTCACAAAGGTTATTCCCAATCTGGACAGCCCAGCAGATACTGGCCATATTGTGGACCGTGATAAAAACACAGTAGAGAGGTTTGAATTTGATCCATTGCAGGAAGATGCGTTTGACATATGCAACAAGATTTGGAAGATGATCGACCGTTAACTGTTTCCGTGGAACAACATTTGACAAGGAGTTGATTTTGCAAATGCCGGGTATTAGAGTGGAACATGACGGAAGAGAGACGATGATTGTTTAGAGCAAATCCGGATTGTAATCTTAATAGACTAGTTCTTGAACAAGCTCCTTCTTTTGTTATGTCTGTACTTATGTAGGACAAACCTCCCTGACTTGTATTTGGTTTAATCTAATTTGCATCGAAAACAAAATTAAGAGATTTGCACGAAAATGATGAACCCAAAAACAAAAAAATGTATTTCATTGCAATTTGCTAAAGAACTCACAGTTGTCCTTGTTATATTATCTGATGTTTTAAACAACAGCTAACATATGGGAAATAGAACGTGTTTACAAGCTAAGATGACTATTAGGCCAAGCCTTAAACGCCTTTTGCCTTGTGAAAGATAAAAACTGTTGAATTTTAGTGCTTTAGTTTGGCTCTTTCAGCTGAACACTTGACTATTTTGCTGTAGAATTTCAGTTGGCACAAAAGAGGTCAAGTTCTGGTTGCCTCCTACGTAGCACATCTGCTGAAATGCATCTGTTGCGTCGTTTCCAAATGAGTTGATCATGAACTCAGCTGAACTACAAGCTGCAGGAACTGATGACCCTCTGTACTCTCTGCAGATGTACGCAATGAAGTTTTGGTAGTCCTGCAAACCACCCAACAGTAAAACACGGTGTAGCAGATCAACAAAGAAGAAAGTGAGCGAAAACACGGTGTAGCAGATCAACAAAGAAAGAAGAAAGTGAGCGAGTGAGGGGTTTAAAGTTTAAACCTGGCGGAGTGGCTGATTGTTGACAAGCACCCATGGCACATACGCGTGAGGTGGGTTTAGCTGACTAGTTTCATATGCATATTGTAACTCAAGCTGCAGAAAAATCATTCAACATGCTTATTAATAGATGTTGGGCCAGTTTATACCAGTAAAAAAAGGATAGGAACAGATCAGTAACTTTACCCTTCCACCATTTCCCTGATTGTAGCAGTCGAAAATAGGCTTGGAGTCAAGTGATACTTGATCAAAGCAACTTTGCCACTCTGCTTCTCTGTTTTGATAGGCCAAACTCTCAATGCATTGAATCATGAAATAGTGTTTGTACTGCCACAAATAATAC ATGGGCGATAATTCCCCACAATTCGATATAAATCAGTTACTATCTTACTGCAATGACCTTGTTGAGGTTCTTAGAGACGACACAGACTTCAACATGTTGAGCCATTGTGTTCAGCTAGGCGAATCCATCCAATCGTCTTCTGATTCCGATTTCAACTCTAACCAGATCGCCATTTCAGATTATCAGAAAAAGATAGATGACTGCAAGCACAAAATAGAAATGGCGCGATCTGAAGTAGTTTCCGATGAAGAAATAGAGCGCCTTCAGAAGGAGCTTGATGTGCAACTCAAGAGAGAGAAGCAGCTTCGAGAGGATCTTAAAGTAATTGATGACGATATTAACGAACTAGATCATCAGCGGCTTTCATTAGAGGACCGGAGTCAGAGGCTGAGGAAACTTGAAGAAGAACAAGATAAAGAACTGAGCAAACTTCAATTATATGCATCTGTCACAAAGGTTATTCCCAATCTGGACAGCCCAGCAGATACTGGCCATATTGTGGACCGTGATAAAAACACAGTAGAGAGGTTTGAATTTGATCCATTGCAGGAAGATGCGTTTGACATATGCAACAAGATTTGGAAGATGATCGACCGTTAA MGDNSPQFDINQLLSYCNDLVEVLRDDTDFNMLSHCVQLGESIQSSSDSDFNSNQIAISDYQKKIDDCKHKIEMARSEVVSDEEIERLQKELDVQLKREKQLREDLKVIDDDINELDHQRLSLEDRSQRLRKLEEEQDKELSKLQLYASVTKVIPNLDSPADTGHIVDRDKNTVERFEFDPLQEDAFDICNKIWKMIDR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21071.1 vs. NCBI nr
Match: gi|902164525|gb|KNA06979.1| (hypothetical protein SOVF_176160 [Spinacia oleracea]) HSP 1 Score: 384.0 bits (985), Expect = 1.600e-103 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
BLAST of Spo21071.1 vs. NCBI nr
Match: gi|731331712|ref|XP_010676805.1| (PREDICTED: uncharacterized protein LOC104892541 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 266.9 bits (681), Expect = 2.800e-68 Identity = 139/200 (69.50%), Postives = 170/200 (85.00%), Query Frame = 1
BLAST of Spo21071.1 vs. NCBI nr
Match: gi|225439466|ref|XP_002268627.1| (PREDICTED: uncharacterized protein LOC100247080 isoform X2 [Vitis vinifera]) HSP 1 Score: 188.0 bits (476), Expect = 1.600e-44 Identity = 97/200 (48.50%), Postives = 143/200 (71.50%), Query Frame = 1
BLAST of Spo21071.1 vs. NCBI nr
Match: gi|568854997|ref|XP_006481099.1| (PREDICTED: uncharacterized protein LOC102625821 [Citrus sinensis]) HSP 1 Score: 187.6 bits (475), Expect = 2.100e-44 Identity = 92/199 (46.23%), Postives = 148/199 (74.37%), Query Frame = 1
BLAST of Spo21071.1 vs. NCBI nr
Match: gi|118483783|gb|ABK93784.1| (unknown [Populus trichocarpa]) HSP 1 Score: 184.5 bits (467), Expect = 1.800e-43 Identity = 93/200 (46.50%), Postives = 149/200 (74.50%), Query Frame = 1
BLAST of Spo21071.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIA7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_176160 PE=4 SV=1) HSP 1 Score: 384.0 bits (985), Expect = 1.100e-103 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
BLAST of Spo21071.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F918_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g103190 PE=4 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 1.900e-68 Identity = 139/200 (69.50%), Postives = 170/200 (85.00%), Query Frame = 1
BLAST of Spo21071.1 vs. UniProtKB/TrEMBL
Match: A9PBN1_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 1.300e-43 Identity = 93/200 (46.50%), Postives = 149/200 (74.50%), Query Frame = 1
BLAST of Spo21071.1 vs. UniProtKB/TrEMBL
Match: A0A061EQI8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_021617 PE=4 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 8.200e-43 Identity = 95/199 (47.74%), Postives = 141/199 (70.85%), Query Frame = 1
BLAST of Spo21071.1 vs. UniProtKB/TrEMBL
Match: A0A067JTH8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00431 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.400e-42 Identity = 92/200 (46.00%), Postives = 143/200 (71.50%), Query Frame = 1
BLAST of Spo21071.1 vs. TAIR (Arabidopsis)
Match: AT3G08880.1 (unknown protein) HSP 1 Score: 137.5 bits (345), Expect = 9.000e-33 Identity = 72/200 (36.00%), Postives = 132/200 (66.00%), Query Frame = 1
BLAST of Spo21071.1 vs. TAIR (Arabidopsis)
Match: AT5G01570.1 (unknown protein) HSP 1 Score: 104.8 bits (260), Expect = 6.400e-23 Identity = 69/194 (35.57%), Postives = 114/194 (58.76%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21071.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21071.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21071.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo21071.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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