Spo21147 (gene)

Overview
NameSpo21147
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 45585996 .. 45588159 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGCTGCTGGCAGAAGGGAAGGGATGTGGGTTGATGTGGGCTTGGTGGCCAAGAGAAAAAGTCAAGGAGCGAAAAAGAGAGACTGGTGTTGATGGGCTTGGTGGCCAAGAGAAAAAGTCAAGGAGCTAGAAAGGAGACTGGTGTTGATGGGCTTGGTGGCCAAGGGGATGCATGATGGGGCCTGTTGGCAGTGCTTGACTGCAGGTGGAGGAGAGAGTGAGATGAGGGGAGTGGATCTCCGTAGTTGCCTTTGAAGAATACGTATGGTGGTTGAGGGAATTCTCGAGAAAGGATACATGGACTGAAATTTTGGGTGTTTCGGTTTATTTTAAAACTAAAATGATATGACAGGTATCCGAATTAGAAAATTAATGGAACCGATAAAATTTCCCATTAGCATGTCAGATGACTAATCTTTTCCAAAGTTCAGGGGTATCATTTGGATTCTATTTTTTCTCATCTTTTCTTTTCTTTCAAAGAAGAGTTTAAGTTTTATTATGGAAAGTTTGGCCTCAGTGATCATTCATATCTGATAATCAGAATTGTCAATAGTAGAAGGGTACTATGCAGAATTGCTACATAAAAAGGCTCAAACTTTGATCTCTTTTTTCTTTTCTTTCAAGAAGAGTTTATTTATAATGGAAAGTATGGCTTCATTGAATCAAATCCAAAGAACATCAATTGCCTGTCATGTTTCCAAAAGAGTACCAGTCAATCAAGTGTGGCAGCCCATCAAATTAATTGATACAAATTCTGTTCCTGTACTAGTTTCACCTAAGTGAACTAGTTCTTCTATCCATCAGAGGACTTCTTGTTCTCATTGTTTTGCTCTCCTTTTTTCCTACTGTTAGTATAATATAATATTTTTCTTATCAAAAAAGAAAAACTAGTTCTTCTATCCTCTGCCGCATCCATCAAACCTTTTCATTCTCTTGCACTCTTATCATTTTGTTGTTGAAGCTTATCCTCTCTGTAGTATGTACAGATTTCATTGACAACTGAAAGGCCTATGACACATTTCTTTTTCCATTGACATATTGACTTGTGTGATATAGAATAGACCAGGACTGAGTGAATAAGCTAAGATAGTAATCACAAGGTTTCTTGCTGGTAGTAAATTGGGAGGGAAAGTTGAATTTGGAGTAATAGTTTTAATGAAGGCAAGCACGAAAGTAGATAGATGGAAAAGAAAGGCAACGTACAGTACATCTGGGTGCATTTCCCATTCTGTAGCCTGACTTCAGAGATAGGTTTCTGACTTGCTCCTGCTATCAAATTTCAACTTATGTTTCTGCTTTCACTGCTCATTTCCCATTCATTGAAGTCTGTTGGGTTCCATCTGCTGCTTCCAACTTCTAATGATGGATTTTCATTGCTCATTTAGTTGCCAGGATGGTTATTTCCCCGTAACTGTTTTTTTTTTTTTTTTTTTTTCAATAAATAGAATATTTGCTGAATTATATGAAGACAGTAAATAGTTGAGAGGGACACTATTAAAAGATATTTTGAAGTTGACATTCTTTGCTCTGACATTCTTTTGGTGAATTGGCAGGCCTTGTATGAATTACGACTGCATGTTGATGGAAACAAGGTTTTTGAAGATTGAGGAGATTGAAGTGGTTAGTCGTTATAATTCTCATGTACAACTGGTTGTACCATGCTTGTACCGTGTGCTGGTACGGCCTAGGAAGACCACCGTGTTTTGCAAACACACCTTGTCGTACCCCCCTCACCCCCAAGGGGAAATAAAGGGGAGGACTTAATTTTGCACATTGTGGGGATTTTAGGGAACTAGATCCCTTTTGCTACTTTAGTAAATGTAAAAGTAAATATTTCTATTTTAAGTTGCTGTTAATTGGAAGCATCCACTGGTTATACAGAATTAGACATGGACGACATGGTGGAATAATTGAGGTGTTTCGATTTCATAACCCAATACTAAATATAGTTATATAACTTCCTCTTTTTTTATTTGTTCTTCCCCATTCCTCTAATGGAAATTTCAAAAAGTTCTTCCCATTTGTAATCATATAGAAATATGTGGTCCATGAACAATGATTTCATTTTGCTTGGATGCTTTTGTATGATCCAAATTCAATCAAAACTGGCTTAGAACTTAATTCCTCCGTTCTTTTTTATATGACACAATTTGACTTTTGA

mRNA sequence

ATGGGGGCTGCTGGCAGAAGGGAAGGGATGTGGGTTGATGTGGGCTTGGTGGCCAAGAGAAAAAGTCAAGGAGCGAAAAAGAGAGACTGGCCTTGTATGAATTACGACTGCATGTTGATGGAAACAAGGTTTTTGAAGATTGAGGAGATTGAAGTGGTTAGTCGTTATAATTCTCATGTACAACTGGTTGTACCATGCTTGTACCGTGTGCTGGTACGGCCTAGGAAGACCACCGTGTTTTGCAAACACACCTTGTCGTACCCCCCTCACCCCCAAGGGGAAATAAAGGGGAGGACTTAATTTTGCACATTGTGGGGATTTTAGGGAACTAGATCCCTTTTGCTACTTTAGTAAATGTAAAAGTAAATATTTCTATTTTAAGTTGCTGTTAATTGGAAGCATCCACTGGTTATACAGAATTAGACATGGACGACATGGTGGAATAATTGAGGTGTTTCGATTTCATAACCCAATACTAAATATAGTTATATAACTTCCTCTTTTTTTATTTGTTCTTCCCCATTCCTCTAATGGAAATTTCAAAAAGTTCTTCCCATTTGTAATCATATAGAAATATGTGGTCCATGAACAATGATTTCATTTTGCTTGGATGCTTTTGTATGATCCAAATTCAATCAAAACTGGCTTAGAACTTAATTCCTCCGTTCTTTTTTATATGACACAATTTGACTTTTGA

Coding sequence (CDS)

ATGGGGGCTGCTGGCAGAAGGGAAGGGATGTGGGTTGATGTGGGCTTGGTGGCCAAGAGAAAAAGTCAAGGAGCGAAAAAGAGAGACTGGCCTTGTATGAATTACGACTGCATGTTGATGGAAACAAGGTTTTTGAAGATTGAGGAGATTGAAGTGGTTAGTCGTTATAATTCTCATGTACAACTGGTTGTACCATGCTTGTACCGTGTGCTGGTACGGCCTAGGAAGACCACCGTGTTTTGCAAACACACCTTGTCGTACCCCCCTCACCCCCAAGGGGAAATAAAGGGGAGGACTTAA

Protein sequence

MGAAGRREGMWVDVGLVAKRKSQGAKKRDWPCMNYDCMLMETRFLKIEEIEVVSRYNSHVQLVVPCLYRVLVRPRKTTVFCKHTLSYPPHPQGEIKGRT
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21147.1Spo21147.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo21147.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo21147.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo21147.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo21147.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0010104 regulation of ethylene-activated signaling pathway
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0006366 transcription by RNA polymerase II
cellular_component GO:0005840 ribosome
cellular_component GO:0005669 transcription factor TFIID complex
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0003743 translation initiation factor activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo120840.70Barchart | Table
Spo267260.68Barchart | Table
Spo092990.66Barchart | Table
Spo214730.66Barchart | Table
Spo145130.65Barchart | Table