Spo21226 (gene)

Overview
NameSpo21226
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_181 : 458860 .. 459528 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCACATGATTTTCAAGGGAGGCCTGTCCTCGAGAGAAAAGCTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGGTGAGTGTTGGAATGCTAGCCATTATTATTCTTGTCAGAACACTATAATCTTTAGTATTAACCGTTTAATCCTTCCTTGCCCCCCTTTCTTCTTCTATGTACATGTAATGACCATGTAAGTGAACGTATTGCCTTCTATGGTGTCAGTACAAACCTAGGAAGTTATATATGGTGTCAATGCTCTGGGTGTTTTTGTACTTTGCATAGATTATTGCTTGATTGTACTTTGTATAGATTATTACTTGATATTCACTAGTAGAAAAATCTTTTTGTGGAAATACTTAATATAATGATTCTCTTGTACAGATGATATTGGAACCAATGTTGAGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGAGTTCAAATTCAGCACCGGTGAGTTGTGTTTTCACCGATGATGTTTCTTCCAGTGTTATCTTATCCAAATATTTTGGCAATAGTTAGTCTTGTGTTGGATTTTGGGGGGGGGGGGGGGGGTNAAAAAAGAAAGAATACGCTGAAAGATGTTTCTGTTTGTTTTGACAGTCTTGGCTATATTCATTGTGGCTTGTGAACAAAAGTTCAACTAG

mRNA sequence

ATGGAGCACATGATTTTCAAGGGAGGCCTGTCCTCGAGAGAAAAGCTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGATGATATTGGAACCAATGTTGAGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGAGTTCAAATTCAGCACCGTCTTGGCTATATTCATTGTGGCTTGTGAACAAAAGTTCAACTAG

Coding sequence (CDS)

ATGGAGCACATGATTTTCAAGGGAGGCCTGTCCTCGAGAGAAAAGCTGGAATTAATTTGGAGACCCTGTCTTTTTATTTGTGATGATATTGGAACCAATGTTGAGAACGCTCAAGCAGGCGACCCATCTGGCAAAGGCATCAAAGACTCGGAGTTCAAATTCAGCACCGTCTTGGCTATATTCATTGTGGCTTGTGAACAAAAGTTCAACTAG

Protein sequence

MEHMIFKGGLSSREKLELIWRPCLFICDDIGTNVENAQAGDPSGKGIKDSEFKFSTVLAIFIVACEQKFN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21226.1Spo21226.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo21226.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21226.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21226.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21226.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0048653 anther development
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0042793 plastid transcription
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006886 intracellular protein transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
cellular_component GO:0016020 membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0005737 cytoplasm
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0008794 arsenate reductase (glutaredoxin) activity
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0003690 double-stranded DNA binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
RNA-Seq Expression