Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACAAAACAAATCTCGTCTTTACTCTCCTTTATTATAATAATAATTTAATTTAATATTATTCCCATGCTGTAACCTTCACACGACTATATATAAATATAACTCCCCACCCCCCTCTTCTTTGCTTTGTTCTCCATTCATTGTTGTGTTCCTTTGTCACCATACAAACGCCTTTTCTCAGAACGTACAATCCATTTCGAGAGAGAGAAATTCTGTTTTTTTTTTTTTTTGCATTTTCTTCTGGTTTTTCTTAAGGGTTGTTTGAGTTTCTGGTTCAAGAAAGCAAGAAATGGCTATTCAAGCGCAGATGTACCCTGATAATTTTGGGTTGCCGTTGATTGGTGGTGGTGTTACTGGCGGAGGTGGTGGAGGAGGGTGTCAACAAGATTGGGTTTTCTTGGCGGCGAACAACCAAATCAACACCAATAGCAACAACTTCGTCAATGGTTGTGGGTTTAATGAGATTAGTACTATTAATCTTCAACAACAAAAGCAACAACAGCAATACCAATATCAACAACAGCAGCAACAACAACAACAACAACAATCTTTGTTACAACTTCAGCAACAGTATTTGCTACAGATTCAAAATCATCAACAACAACAACAACAAAGAAGCTCTTTTGTCAATCATAATAATATTAGCAACAACAACAACGACGGTTTTGTGTTTTTGTCATCCCCGAAAAACTGCACAACCGTCTCAACTACAACAACAACCGCAAGTACAACCACGAGTGGAGGCAGTTGTGATTATCAAATACCACCTATGAGTTTTTCTCCAAGTTTTTCCAATCAACTTGAGAAACAAAGGCAGGAGATTGACAGATTCATTACTTTACAGGTTGGTTGCAATTTTTAGTTGTTAAATCGACATTCAGACACCTTTTCTTTAATTTTAATGGGGTATTTATGATTTGTGAATTAATCTTTATTTTGGATTTAATTTTGCAGAATGAGCGTCTAAAAATGGCATTACAAGAACAGAGGAAACAGCAATTAGCAACACTAATGAGGGAATTAAAAGCAACGCAAATAATGCATCAAAAAGATGAAGAGATTGCAAGAGCAGCAAAAAGAACAATGGATTTGGAAGAAATCATACAAAGAATGGAGATTGAAAACCAAGAATGGCAAAGATTAGCAACAGAAAATGAAGCAATGGTACATTCATTGAACAACACATTAGTGCAACTCAAAGAACAGCAAAATCAACAACAGGGTTCAATATCATCATCATGTTCTTCAAATGAGGTTGACGATGCAGAATCTTGCTGTAATAATTTTGTTGCTGACAACAGTAAAAAAAGAGGAAGAGAAGGCGAAACAGGGGTTGAAACAGGGGTTGTTGCAGAAACAAGGGTAAAAAGAGGGAAAACAAGGGAAGTTTTATGCAAAGTCTGCAAATCTGGGAAATCGTGCGTTTTATTACTGCCATGCAGACATCTGTGTTGTTGCAAAGGATGTGAAGCTTTAGTTGATGCTTGTCCTGTTTGTAAATCAGCTAAAATGGCAAGCATTGAAGCTCTCATTTCATGATGATGATAGATAGTTGGAGAAAAAAGATAAAATTGAATATATTTTTTTAATTTTTAATCTTTTTTTAGGGAGAAAGTGAAACGAAAATTTGTCCAGATTTGATCAGAGAAAGTCTGACTCGAAAAAGAAAAAAAAGTGAAACAATGAACAAATGGCCATTTTGATTTTTGATCCTAGTTACTGTATTTTAGTCTTTTGGTAAATATTTTCTCTATCTTTGCAGATAAATCAGAGGTGGTTGAGGGGAAATCACAATCAATTGAACAGAATTTTAGTACATTGGCAGGGTCTTTGCCTGTTTGGTAATCTGCTACATTTACCCAGTGTATCAAATAGTAATCTACCCTAAGCTCTCATTGGTTGTTGTCATATATTTAAATAACCCTATGTTAGCCCAATCACAGCCAAGGGACTAAGGGTATATGTAACTTTTTGACGTTTTTTGTTACATTTTTAAAAAAAATTCCGTACTTAAATATTTTTGATATTCTCATTCGTTTTCTTTTCTTTTTATACTTGTAATCTTATTTGTTTATCAATATAAAACCATGCAATCTCATTGGTTAATTTAAGTATTGATGAATTGACATTGATTCCTTAAATTCTATTGGTTCTTAAAGGTAACTTTAAAAGTTATTGTACAACAAT TACAAAACAAATCTCGTCTTTACTCTCCTTTATTATAATAATAATTTAATTTAATATTATTCCCATGCTGTAACCTTCACACGACTATATATAAATATAACTCCCCACCCCCCTCTTCTTTGCTTTGTTCTCCATTCATTGTTGTGTTCCTTTGTCACCATACAAACGCCTTTTCTCAGAACGTACAATCCATTTCGAGAGAGAGAAATTCTGTTTTTTTTTTTTTTTGCATTTTCTTCTGGTTTTTCTTAAGGGTTGTTTGAGTTTCTGGTTCAAGAAAGCAAGAAATGGCTATTCAAGCGCAGATGTACCCTGATAATTTTGGGTTGCCGTTGATTGGTGGTGGTGTTACTGGCGGAGGTGGTGGAGGAGGGTGTCAACAAGATTGGGTTTTCTTGGCGGCGAACAACCAAATCAACACCAATAGCAACAACTTCGTCAATGGTTGTGGGTTTAATGAGATTAGTACTATTAATCTTCAACAACAAAAGCAACAACAGCAATACCAATATCAACAACAGCAGCAACAACAACAACAACAACAATCTTTGTTACAACTTCAGCAACAGTATTTGCTACAGATTCAAAATCATCAACAACAACAACAACAAAGAAGCTCTTTTGTCAATCATAATAATATTAGCAACAACAACAACGACGGTTTTGTGTTTTTGTCATCCCCGAAAAACTGCACAACCGTCTCAACTACAACAACAACCGCAAGTACAACCACGAGTGGAGGCAGTTGTGATTATCAAATACCACCTATGAGTTTTTCTCCAAGTTTTTCCAATCAACTTGAGAAACAAAGGCAGGAGATTGACAGATTCATTACTTTACAGAATGAGCGTCTAAAAATGGCATTACAAGAACAGAGGAAACAGCAATTAGCAACACTAATGAGGGAATTAAAAGCAACGCAAATAATGCATCAAAAAGATGAAGAGATTGCAAGAGCAGCAAAAAGAACAATGGATTTGGAAGAAATCATACAAAGAATGGAGATTGAAAACCAAGAATGGCAAAGATTAGCAACAGAAAATGAAGCAATGGTACATTCATTGAACAACACATTAGTGCAACTCAAAGAACAGCAAAATCAACAACAGGGTTCAATATCATCATCATGTTCTTCAAATGAGGTTGACGATGCAGAATCTTGCTGTAATAATTTTGTTGCTGACAACAGTAAAAAAAGAGGAAGAGAAGGCGAAACAGGGGTTGAAACAGGGGTTGTTGCAGAAACAAGGGTAAAAAGAGGGAAAACAAGGGAAGTTTTATGCAAAGTCTGCAAATCTGGGAAATCGTGCGTTTTATTACTGCCATGCAGACATCTGTGTTGTTGCAAAGGATGTGAAGCTTTAGTTGATGCTTGTCCTGTTTGTAAATCAGCTAAAATGGCAAGCATTGAAGCTCTCATTTCATGATGATGATAGATAGTTGGAGAAAAAAGATAAAATTGAATATATTTTTTTAATTTTTAATCTTTTTTTAGGGAGAAAGTGAAACGAAAATTTGTCCAGATTTGATCAGAGAAAGTCTGACTCGAAAAAGAAAAAAAAGTGAAACAATGAACAAATGGCCATTTTGATTTTTGATCCTAGTTACTGTATTTTAGTCTTTTGGTAAATATTTTCTCTATCTTTGCAGATAAATCAGAGGTGGTTGAGGGGAAATCACAATCAATTGAACAGAATTTTAGTACATTGGCAGGGTCTTTGCCTGTTTGGTAATCTGCTACATTTACCCAGTGTATCAAATAGTAATCTACCCTAAGCTCTCATTGGTTGTTGTCATATATTTAAATAACCCTATGTTAGCCCAATCACAGCCAAGGGACTAAGGGTATATGTAACTTTTTGACGTTTTTTGTTACATTTTTAAAAAAAATTCCGTACTTAAATATTTTTGATATTCTCATTCGTTTTCTTTTCTTTTTATACTTGTAATCTTATTTGTTTATCAATATAAAACCATGCAATCTCATTGGTTAATTTAAGTATTGATGAATTGACATTGATTCCTTAAATTCTATTGGTTCTTAAAGGTAACTTTAAAAGTTATTGTACAACAAT ATGGCTATTCAAGCGCAGATGTACCCTGATAATTTTGGGTTGCCGTTGATTGGTGGTGGTGTTACTGGCGGAGGTGGTGGAGGAGGGTGTCAACAAGATTGGGTTTTCTTGGCGGCGAACAACCAAATCAACACCAATAGCAACAACTTCGTCAATGGTTGTGGGTTTAATGAGATTAGTACTATTAATCTTCAACAACAAAAGCAACAACAGCAATACCAATATCAACAACAGCAGCAACAACAACAACAACAACAATCTTTGTTACAACTTCAGCAACAGTATTTGCTACAGATTCAAAATCATCAACAACAACAACAACAAAGAAGCTCTTTTGTCAATCATAATAATATTAGCAACAACAACAACGACGGTTTTGTGTTTTTGTCATCCCCGAAAAACTGCACAACCGTCTCAACTACAACAACAACCGCAAGTACAACCACGAGTGGAGGCAGTTGTGATTATCAAATACCACCTATGAGTTTTTCTCCAAGTTTTTCCAATCAACTTGAGAAACAAAGGCAGGAGATTGACAGATTCATTACTTTACAGAATGAGCGTCTAAAAATGGCATTACAAGAACAGAGGAAACAGCAATTAGCAACACTAATGAGGGAATTAAAAGCAACGCAAATAATGCATCAAAAAGATGAAGAGATTGCAAGAGCAGCAAAAAGAACAATGGATTTGGAAGAAATCATACAAAGAATGGAGATTGAAAACCAAGAATGGCAAAGATTAGCAACAGAAAATGAAGCAATGGTACATTCATTGAACAACACATTAGTGCAACTCAAAGAACAGCAAAATCAACAACAGGGTTCAATATCATCATCATGTTCTTCAAATGAGGTTGACGATGCAGAATCTTGCTGTAATAATTTTGTTGCTGACAACAGTAAAAAAAGAGGAAGAGAAGGCGAAACAGGGGTTGAAACAGGGGTTGTTGCAGAAACAAGGGTAAAAAGAGGGAAAACAAGGGAAGTTTTATGCAAAGTCTGCAAATCTGGGAAATCGTGCGTTTTATTACTGCCATGCAGACATCTGTGTTGTTGCAAAGGATGTGAAGCTTTAGTTGATGCTTGTCCTGTTTGTAAATCAGCTAAAATGGCAAGCATTGAAGCTCTCATTTCATGA MAIQAQMYPDNFGLPLIGGGVTGGGGGGGCQQDWVFLAANNQINTNSNNFVNGCGFNEISTINLQQQKQQQQYQYQQQQQQQQQQQSLLQLQQQYLLQIQNHQQQQQQRSSFVNHNNISNNNNDGFVFLSSPKNCTTVSTTTTTASTTTSGGSCDYQIPPMSFSPSFSNQLEKQRQEIDRFITLQNERLKMALQEQRKQQLATLMRELKATQIMHQKDEEIARAAKRTMDLEEIIQRMEIENQEWQRLATENEAMVHSLNNTLVQLKEQQNQQQGSISSSCSSNEVDDAESCCNNFVADNSKKRGREGETGVETGVVAETRVKRGKTREVLCKVCKSGKSCVLLLPCRHLCCCKGCEALVDACPVCKSAKMASIEALIS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21276.1 vs. NCBI nr
Match: gi|902228798|gb|KNA21264.1| (hypothetical protein SOVF_044370 [Spinacia oleracea]) HSP 1 Score: 678.3 bits (1749), Expect = 7.600e-192 Identity = 377/381 (98.95%), Postives = 377/381 (98.95%), Query Frame = 1
BLAST of Spo21276.1 vs. NCBI nr
Match: gi|731357723|ref|XP_010690363.1| (PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 402.9 bits (1034), Expect = 6.200e-109 Identity = 264/394 (67.01%), Postives = 302/394 (76.65%), Query Frame = 1
BLAST of Spo21276.1 vs. NCBI nr
Match: gi|590684329|ref|XP_007041821.1| (SBP family protein, putative [Theobroma cacao]) HSP 1 Score: 189.1 bits (479), Expect = 1.400e-44 Identity = 163/383 (42.56%), Postives = 210/383 (54.83%), Query Frame = 1
BLAST of Spo21276.1 vs. NCBI nr
Match: gi|567859872|ref|XP_006422590.1| (hypothetical protein CICLE_v10028906mg [Citrus clementina]) HSP 1 Score: 185.3 bits (469), Expect = 2.000e-43 Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 1
BLAST of Spo21276.1 vs. NCBI nr
Match: gi|641849201|gb|KDO68076.1| (hypothetical protein CISIN_1g021834mg [Citrus sinensis]) HSP 1 Score: 184.9 bits (468), Expect = 2.600e-43 Identity = 115/228 (50.44%), Postives = 151/228 (66.23%), Query Frame = 1
BLAST of Spo21276.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQU5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044370 PE=4 SV=1) HSP 1 Score: 678.3 bits (1749), Expect = 5.300e-192 Identity = 377/381 (98.95%), Postives = 377/381 (98.95%), Query Frame = 1
BLAST of Spo21276.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EEK1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g214010 PE=4 SV=1) HSP 1 Score: 402.9 bits (1034), Expect = 4.300e-109 Identity = 264/394 (67.01%), Postives = 302/394 (76.65%), Query Frame = 1
BLAST of Spo21276.1 vs. UniProtKB/TrEMBL
Match: A0A061DZ76_THECC (SBP family protein, putative OS=Theobroma cacao GN=TCM_006620 PE=4 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 9.800e-45 Identity = 163/383 (42.56%), Postives = 210/383 (54.83%), Query Frame = 1
BLAST of Spo21276.1 vs. UniProtKB/TrEMBL
Match: V4SAH3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028906mg PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.400e-43 Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 1
BLAST of Spo21276.1 vs. UniProtKB/TrEMBL
Match: A0A067FXY9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g021834mg PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 1.800e-43 Identity = 115/228 (50.44%), Postives = 151/228 (66.23%), Query Frame = 1
BLAST of Spo21276.1 vs. ExPASy Swiss-Prot
Match: BRG2_ARATH (Probable BOI-related E3 ubiquitin-protein ligase 2 OS=Arabidopsis thaliana GN=BRG2 PE=1 SV=1) HSP 1 Score: 108.6 bits (270), Expect = 1.500e-22 Identity = 88/266 (33.08%), Postives = 135/266 (50.75%), Query Frame = 1
BLAST of Spo21276.1 vs. ExPASy Swiss-Prot
Match: BRG3_ARATH (Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana GN=BRG3 PE=1 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 5.500e-17 Identity = 70/225 (31.11%), Postives = 122/225 (54.22%), Query Frame = 1
BLAST of Spo21276.1 vs. ExPASy Swiss-Prot
Match: BOI_ARATH (E3 ubiquitin-protein ligase BOI OS=Arabidopsis thaliana GN=BOI PE=1 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 1.400e-12 Identity = 75/229 (32.75%), Postives = 114/229 (49.78%), Query Frame = 1
BLAST of Spo21276.1 vs. ExPASy Swiss-Prot
Match: BRG1_ARATH (BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana GN=BRG1 PE=1 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 5.400e-12 Identity = 72/229 (31.44%), Postives = 108/229 (47.16%), Query Frame = 1
BLAST of Spo21276.1 vs. TAIR (Arabidopsis)
Match: AT4G35070.1 (SBP (S-ribonuclease binding protein) family protein) HSP 1 Score: 137.9 bits (346), Expect = 1.300e-32 Identity = 91/224 (40.62%), Postives = 133/224 (59.38%), Query Frame = 1
BLAST of Spo21276.1 vs. TAIR (Arabidopsis)
Match: AT1G79110.1 (zinc ion binding) HSP 1 Score: 108.6 bits (270), Expect = 8.500e-24 Identity = 88/266 (33.08%), Postives = 135/266 (50.75%), Query Frame = 1
BLAST of Spo21276.1 vs. TAIR (Arabidopsis)
Match: AT3G12920.1 (SBP (S-ribonuclease binding protein) family protein) HSP 1 Score: 90.1 bits (222), Expect = 3.100e-18 Identity = 70/225 (31.11%), Postives = 122/225 (54.22%), Query Frame = 1
BLAST of Spo21276.1 vs. TAIR (Arabidopsis)
Match: AT1G45976.1 (S-ribonuclease binding protein 1) HSP 1 Score: 79.7 bits (195), Expect = 4.200e-15 Identity = 78/283 (27.56%), Postives = 139/283 (49.12%), Query Frame = 1
BLAST of Spo21276.1 vs. TAIR (Arabidopsis)
Match: AT4G19700.1 (SBP (S-ribonuclease binding protein) family protein) HSP 1 Score: 75.5 bits (184), Expect = 8.000e-14 Identity = 75/229 (32.75%), Postives = 114/229 (49.78%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21276.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21276.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21276.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo21276.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|