Spo21317 (gene)

Overview
NameSpo21317
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionComplex 1 protein, LYR family protein
Locationchr2 : 17437197 .. 17437466 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCGCCAGCAAGAGCAGAAATCCTGCATCTATTCCGGTCACTCCTGCGTGAAGCTCGTAAATTCCCCGACTACAATATCAGAGAATACGCTAAGAGAAGAACCATCGATGCCTTCCGTCACAACAAATCACTATCAGATCCTTCTTCCATCTCTCAAGCCTTCGCTGAGGCCAACTCTCAGCTCGACGTCGCTAAGCGCCAAGCTGTTGTTTACTCCCTTTATGCCCCCAAAGTTCGGAGCATTATGGAAGTCCCCAACGAATAG

mRNA sequence

ATGACTGCGCCAGCAAGAGCAGAAATCCTGCATCTATTCCGGTCACTCCTGCGTGAAGCTCGTAAATTCCCCGACTACAATATCAGAGAATACGCTAAGAGAAGAACCATCGATGCCTTCCGTCACAACAAATCACTATCAGATCCTTCTTCCATCTCTCAAGCCTTCGCTGAGGCCAACTCTCAGCTCGACGTCGCTAAGCGCCAAGCTGTTGTTTACTCCCTTTATGCCCCCAAAGTTCGGAGCATTATGGAAGTCCCCAACGAATAG

Coding sequence (CDS)

ATGACTGCGCCAGCAAGAGCAGAAATCCTGCATCTATTCCGGTCACTCCTGCGTGAAGCTCGTAAATTCCCCGACTACAATATCAGAGAATACGCTAAGAGAAGAACCATCGATGCCTTCCGTCACAACAAATCACTATCAGATCCTTCTTCCATCTCTCAAGCCTTCGCTGAGGCCAACTCTCAGCTCGACGTCGCTAAGCGCCAAGCTGTTGTTTACTCCCTTTATGCCCCCAAAGTTCGGAGCATTATGGAAGTCCCCAACGAATAG

Protein sequence

MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQLDVAKRQAVVYSLYAPKVRSIMEVPNE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21317.1Spo21317.1mRNA


Homology
[Close]
BLAST of Spo21317.1 vs. NCBI nr
Match: gi|902184451|gb|KNA10296.1| (hypothetical protein SOVF_145730 [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 5.400e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN
Sbjct: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 90
          SQLDVAKRQAVVYSLYAPKVRSIMEVPNE
Sbjct: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 89
[Close]
BLAST of Spo21317.1 vs. NCBI nr
Match: gi|731362971|ref|XP_010693177.1| (PREDICTED: LYR motif-containing protein 4B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.4 bits (368), Expect = 2.400e-32
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1 

		  

Query: 4  PARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQL 63
          PARAEI+H++RSLLREARKFPDYNIREYAKRRTID F HNKSLSDPSS++QA A+A SQL
Sbjct: 3  PARAEIIHIYRSLLREARKFPDYNIREYAKRRTIDGFHHNKSLSDPSSVAQALADAKSQL 62

Query: 64 DVAKRQAVVYSLYAPKVRSIMEVPNE 90
          ++AKRQ VVYSLYAPK +SIMEVPNE
Sbjct: 63 EIAKRQTVVYSLYAPKFKSIMEVPNE 88
[Close]
BLAST of Spo21317.1 vs. NCBI nr
Match: gi|698528689|ref|XP_009761176.1| (PREDICTED: LYR motif-containing protein 4 [Nicotiana sylvestris])

HSP 1 Score: 127.5 bits (319), Expect = 1.200e-26
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLL+ AR+FPDYNIREY KRRTID FR NK LSDPS ++ AF+E  
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86
[Close]
BLAST of Spo21317.1 vs. NCBI nr
Match: gi|460380605|ref|XP_004236045.1| (PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum])

HSP 1 Score: 127.1 bits (318), Expect = 1.500e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86
[Close]
BLAST of Spo21317.1 vs. NCBI nr
Match: gi|697139318|ref|XP_009623746.1| (PREDICTED: LYR motif-containing protein 4 [Nicotiana tomentosiformis])

HSP 1 Score: 126.3 bits (316), Expect = 2.600e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLL+ AR+FPDYNIREY KRRTID FR NK LSDPS ++ AF+E  
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          +QL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVMEL 86
[Close]
BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUX3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145730 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.800e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN
Sbjct: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 90
          SQLDVAKRQAVVYSLYAPKVRSIMEVPNE
Sbjct: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 89
[Close]
BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEC0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g046300 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.700e-32
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1 

		  

Query: 4  PARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQL 63
          PARAEI+H++RSLLREARKFPDYNIREYAKRRTID F HNKSLSDPSS++QA A+A SQL
Sbjct: 3  PARAEIIHIYRSLLREARKFPDYNIREYAKRRTIDGFHHNKSLSDPSSVAQALADAKSQL 62

Query: 64 DVAKRQAVVYSLYAPKVRSIMEVPNE 90
          ++AKRQ VVYSLYAPK +SIMEVPNE
Sbjct: 63 EIAKRQTVVYSLYAPKFKSIMEVPNE 88
[Close]
BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GXH7_SOLCH (Putative LYR motif-containing protein 4-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86
[Close]
BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: K4BL51_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86
[Close]
BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: M1CAK5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024653 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86
[Close]
BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_TAEGU (LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.200e-12
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R+LLRE+++F  YN R YA RR  DAFR NK+++D   I +   +A 
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVP 88
          + L+V +RQ  +  +YA + + I+E P
Sbjct: 61 ANLEVIQRQGTIDHMYATE-KLIIERP 86
[Close]
BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYM4B_SALSA (LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.400e-11
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1 

		  

Query: 3  APARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQ 62
          A   A++L L+R L++E+ KFP YN R YA RR  DAFR N+S+ DP  + Q   +    
Sbjct: 2  AACTAQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDN 61

Query: 63 LDVAKRQAVVYSLYAPKVRSIME 86
          LD+ +RQ  +  +Y P  ++I+E
Sbjct: 62 LDMIRRQVAIGKMY-PTQKTIVE 83
[Close]
BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_HUMAN (LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R++LRE+++F  YN R YA RR  DAFR NK++ DP  I     +A 
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 SQLDVAKRQAVVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77
[Close]
BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_MOUSE (LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.900e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R+++RE++ F  YN R YA RR  DAFR NK++ DP  I     +A 
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 SQLDVAKRQAVVYSLYA 78
            L++ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77
[Close]
BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_BOVIN (LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.600e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1 

		  

Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R++LRE+++F  YN R YA RR  DAFR NK++ DP  I     +A 
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 SQLDVAKRQAVVYSLYA 78
            L + +RQ  +  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77
[Close]
BLAST of Spo21317.1 vs. TAIR (Arabidopsis)
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 97.8 bits (242), Expect = 3.500e-21
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1 

		  

Query: 7  AEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQLDVA 66
          +E+L L R+LLR  R+FPDYNIREY+KRRT+D FR NK+L+DPS +++A+AEA  QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQAVVYSLYAPKVRSIMEV 87
          +R   VY  Y PK ++IMEV
Sbjct: 65 ERVLKVYLAYPPKTKNIMEV 84
The following BLAST results are available for this feature:
BLAST of Spo21317.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902184451|gb|KNA10296.1|5.4e-40100.hypothetical protein SOVF_1457... [more]
gi|731362971|ref|XP_010693177.1|2.4e-3282.5PREDICTED: LYR motif-containin... [more]
gi|698528689|ref|XP_009761176.1|1.2e-2672.0PREDICTED: LYR motif-containin... [more]
gi|460380605|ref|XP_004236045.1|1.5e-2670.9PREDICTED: LYR motif-containin... [more]
gi|697139318|ref|XP_009623746.1|2.6e-2670.9PREDICTED: LYR motif-containin... [more]
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BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QUX3_SPIOL3.8e-40100.Uncharacterized protein OS=Spi... [more]
A0A0J8BEC0_BETVU1.7e-3282.5Uncharacterized protein OS=Bet... [more]
A0A0V0GXH7_SOLCH1.1e-2670.9Putative LYR motif-containing ... [more]
K4BL51_SOLLC1.1e-2670.9Uncharacterized protein OS=Sol... [more]
M1CAK5_SOLTU1.1e-2670.9Uncharacterized protein OS=Sol... [more]
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BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LYRM4_TAEGU8.2e-1242.5LYR motif-containing protein 4... [more]
LYM4B_SALSA2.4e-1140.9LYR motif-containing protein 4... [more]
LYRM4_HUMAN2.0e-1044.1LYR motif-containing protein 4... [more]
LYRM4_MOUSE5.9e-1041.5LYR motif-containing protein 4... [more]
LYRM4_BOVIN7.6e-1041.5LYR motif-containing protein 4... [more]
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BLAST of Spo21317.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G61220.13.5e-2160.0LYR family of Fe/S cluster bio... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 8..64
score: 4.3
NoneNo IPR availablePANTHERPTHR13166PROTEIN C6ORF149coord: 1..86
score: 3.4

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010143 cutin biosynthetic process
biological_process GO:0001676 long-chain fatty acid metabolic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006814 sodium ion transport
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009853 photorespiration
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0010025 wax biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010103 stomatal complex morphogenesis
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0009507 chloroplast
molecular_function GO:0005524 ATP binding
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0004467 long-chain fatty acid-CoA ligase activity
molecular_function GO:0031957 very long-chain fatty acid-CoA ligase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo253400.76Barchart | Table
Spo257140.70Barchart | Table
Spo175910.69Barchart | Table
Spo159020.68Barchart | Table
Spo263680.66Barchart | Table
Spo021590.65Barchart | Table