Spo21366 (gene)

Overview
NameSpo21366
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 39311972 .. 39313575 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTGATAAGGAGAATGTTGGGAAACATGTTGAAGAATGCTTGTGAGATGGGAGAATTGAATGGATGTATTTACTTATAAGAACTCTATGATGATTTTCAACAAAATGAGCATGGATTTACCTTAAAATAATGGAATGCATATTTGATATGGTAACAAATAATGTTTAATTGGAAATGAATCAAATGATATCAATATTGATTTTATCTCAAGACATTATAATAATGAAAATTAATGTTGCAAAATGATGATGTGTAGATATGGTAGGTATCATAGATTTCTAACCAAATATATTATGAATAATTATAAAAAAAGTTGGAGAATCTTTATATCCTTATTTTACAATGTGTATTTTTTTTTAATACTTTTTCGTAAAATTTATGATGATAAGATTATCAGTTAATCATACATCAAAGAAATTGCATGTACGGTGTACCTACCACCTTCGTACGTTAATAGTTAGCCTCTAGGCTTTCATATCTTTTAGCATGATTACTCGTCAGATCTCACATAAAAGTACAATGGTGTGTTGATTATCACACTCTATTATCTACACTTTCGTTTACAACAACGGCGATGCCAAACGTCATCAAATAAGGATTTAGTGAGAGAAACTTTATCTTTTAAAGTGCGCCTAAATATATAAAAAAGGGTCTCTATTTATAAACGTAAAAATTATTAATATTTAAAAATAGCCATTATAAATGTTTAAATTACAATTTAAAGTGAAAAAATAATTGATTGGTCAAGAAGGCTGTCAGGGACACGATGACACGCTCCCATTGGACGCATTGACACGCCATGTCAGTCTGATTAATTAATTTATTTTTTCGATTTTCAGCACCAAAACGTTGCGTTAGCAATGAAACTGGATGTTTCACTATAAATTTCCTGGTTTTTTTCCCTTACAACTTCTGATGCTTAAGAGGCTTACATGGCTCATGAGCGAAGACTTATTTTAGTTGAAACATCATTTCTTTTAGTTTTCTCCACGGGTGAGGTGTTGTGAACTTATTTAGGTCATCAATTTTTACTTCAAAGATTTCTCCTCGTATCGGTGAGAGTGCTCTAAAAAATACGTAAAAAAATGCATGATCTACCGATTTGACAAAAAACGTGAGAGCTACTACTCGTAATTTTGTTTGGGTGTTCTCGTCTTTTCACATTTGCGTTAAAGAGAAAATAAACAAATTAACAATTGCCAAAAATAAGAAAAGATAAAAAAATATATCGAGATACGCCGCCAACATTCCGGAGGAGGACGGTGTCTCGCTGCAGCAGATCAAAGCGCACGCAGCCAGCCAGCCCCACTTCCCTCCTTCTACTTTGCCGATGTTCCATGCGCCCACACTTTTCCCAATTCTTCGACACTCATTTTCTCTCTCCTCCACTCTCAAACTGTGCTCTAAAGGTTAGTTTCCTGTATTACTTGGTTTCCTTAAACCCTAAACCCTAGTTCATATTCTCACATTTTGTGGGGTTTTTATACTTTTATTTATAAGATCTGAACTTTTATGATTGATGCTAACTTATGTATTTCATTTTTCTGTTTGTGGGTGATTTGATCATTTCAGGGTTTTGATTTTGGTGATGATATATGA

mRNA sequence

ATGGTGGTGATAAGGAGAATGTTGGGAAACATGTTGAAGAATGCTTGTGAGATGGGAGAATTGAATGGATATAAAAAAATATATCGAGATACGCCGCCAACATTCCGGAGGAGGACGGTGTCTCGCTGCAGCAGATCAAAGCGCACGCAGCCAGCCAGCCCCACTTCCCTCCTTCTACTTTGCCGATGTTCCATGCGCCCACACTTTTCCCAATTCTTCGACACTCATTTTCTCTCTCCTCCACTCTCAAACTGTGCTCTAAAGGGTTTTGATTTTGGTGATGATATATGA

Coding sequence (CDS)

ATGGTGGTGATAAGGAGAATGTTGGGAAACATGTTGAAGAATGCTTGTGAGATGGGAGAATTGAATGGATATAAAAAAATATATCGAGATACGCCGCCAACATTCCGGAGGAGGACGGTGTCTCGCTGCAGCAGATCAAAGCGCACGCAGCCAGCCAGCCCCACTTCCCTCCTTCTACTTTGCCGATGTTCCATGCGCCCACACTTTTCCCAATTCTTCGACACTCATTTTCTCTCTCCTCCACTCTCAAACTGTGCTCTAAAGGGTTTTGATTTTGGTGATGATATATGA

Protein sequence

MVVIRRMLGNMLKNACEMGELNGYKKIYRDTPPTFRRRTVSRCSRSKRTQPASPTSLLLLCRCSMRPHFSQFFDTHFLSPPLSNCALKGFDFGDDI
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21366.1Spo21366.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo21366.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21366.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21366.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21366.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010143 cutin biosynthetic process
biological_process GO:0006814 sodium ion transport
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009853 photorespiration
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0001676 long-chain fatty acid metabolic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0010025 wax biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0034976 response to endoplasmic reticulum stress
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005747 mitochondrial respiratory chain complex I
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0031957 very long-chain fatty acid-CoA ligase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004467 long-chain fatty acid-CoA ligase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo143680.68Barchart | Table
Spo159020.67Barchart | Table
Spo175910.67Barchart | Table
Spo153930.66Barchart | Table
Spo251580.65Barchart | Table