Spo21394 (gene) | SpinachBase

Overview


Name	Spo21394
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Long chain acyl-CoA synthetase 4-like protein
Location	chr6 : 39387175 .. 39391525 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTAGTTTAGTAATATATAGTATTATGATATAATTAGAATTCTAGTATGTTTAGGGAACTAGAGTTTGATTAGTTTAGAAATTTAATAGTCGTATACGCCGACCGTATGAGCTACTTCGTATATACGGAGTAGTCATCTAGGAATAGGAAATACTGTCACCGCGCCCTGCTGTAAGTTGATAAGTTGATCCTCTCCTCTCTCTTGCGAAACTTCTTCCTCACCCATTCACAAAACCGCTCTTATTTTCCAGACTTCCTATAAATCTTGATTTCCCCCTCTTTCTCCTAGTTCGTCAAATTTCGCGAAACCCTAGCCCTAATTTTCAATCGAAAATCTCTCCGATAAACCTTCCTTCTTTCTCAAATTCGTGATTTTTCGCAATTTTTCTGTCGATTTCAGGTATGCGTTCTCTCTTTCATTAAATTAGGGTTTTCCATAGCTTTGTCATGGTGTGAATGTGTGATTATCGTTCTTTCAAGGATTATTATCGTGTGATTGTGTTATAATTCTTTCGCCTTAGCGCCTTCAGATTAAGGCAAAATATCTAAGATGATTAACACTATAAAGAATTGTAGGTCGTTTCTTGAAATTGGAATTCGTTCCGAAATTATGATTATTGCTGGTTGTTTCTTGCGTAATTGTGTATGCATCGTGATGTTTGCTTCTTTATCGAGTTTCTGCTGTTTCTTTGTGATGTTCTTGATTTTATGCTGTAATTTTGATTAAAAAATCATTTTGTAACTTAATCGTTGAGGATAAAAGATTTCAATGGAGAAAAAAAATGTTGAGGTCTTTCCGTGTCGTTTCTGTTTCCTTTTAGGTCCTAAGATTTTTCTTTCTTAGCATTGATTACCAAGTTCTGTTTCAGATGGCTATGAAACCACTTACAACCGCGGCTATTGCCCTTACGGAAAAGAAAATGGATATGAGTTTAGGTAATGTCTATTATTTAATTCAGAATGCTGTATCTCAGAGACTATTTCTGGCGGTATTTTAATAAATTTATTGTTCTTGTGCAGACGATATCATCAGGATGTCTAAAACAAATGTTGTCAAGTCCAACAAGCAGAGGGTTCCGGTATGGTTCATTTTCGATTAGTGCTATTTTTTATAATTCTTATCAGATAACTGTAGGTGAATTACATTTTTCTTTACAAAATGTGGATTGCAGAACAAAAGTAAAAAACCTACCAATGGAAAACAAGATAGAGCTTTGAAGACGCGACAATATATGGATTCTAGGTCTACTCTTAGACAGGTTGGTAATAAGGCCTTTTTGTTGTCTATTGAAATCATCCACTTAGCCTAAATCTTGTAGTGGAGTTTGTTAATTTTTCATGTGATAAGCTTATCAAGCATTGCGTTTTTCTTGCTGTTGCATTCAGGGGGTTCTTGCCCAGAAAAGGTCCAATTTTCAGGGAAACAATTTCCCTTTGGCATCTGATGCTGCTCGGAAGGTAGCAGCTGCCCCCTTCCGCAATGGAGGTTTTAACCGTAGTAGGGCTGTTAACTGGAACCGACCAAGGTAAGGATATATGTACCTTTTATGTGTCCTGCCATTCTTTCATATTATCCTTTGTAAGGTGCTATTAATTTTTTTTAATTGTGCGACTATAATGAGGTTTTATCAATTATAATTGCTTGGCAGGTAAATCATGATTCTGTTATACTTGACCATTCCACCTGGTTCCAGCTATTTTATAAGACCATTACGCTGTGTTGCTCCAAATGCCAGAGGGTTTAAATGGTCTCCGTTGTATTTTAAATACACCTTTTTGGTTCTTAGGCCCACATAGCATCTCTGCACCTTTAGTAACTCATCTGTTAAATGCATAAGGGTCCTGAATTGGTTAGCTTTTGCATTTATCGTATGGTCACAACTACCTCACATATGGTGACGAGGTTCTACGAAGTTAACTTGTGGGATGTCCGTTGGGGTTGAGGTCAGGGATTGGTACTGGATCATTATGGAAAGATACATGGTTTTGTTACATAATGTTGAGGCTGCTGAATTATCCATCGGGTACAGGTCAACAGTATGTACAACAGCTACCTGCTGCTTGGGAAAACTTGCTCTGGTAGTTTTTTAAGGGTTTCTTCTGGTTTGCTTACTTGTAGTCTTCAGGGGAGAGCTATATGAAACCTCTGCTTGTGGGGTAGTCTGATTCGAAGTTTGAGTGTTCTTTGCCCTTTCCATGCACTTGCTGCCCTTGATGAGGTCGTGTTTCTGTGTTCATCTGGCTTCCCTTGTCAATAACAATTCCACCTTTTGCACCTAACTTCATAGCCTGCCTTACAATTTAGAATTTGGCTAGCTGCCATGCTTTGCAACCCTCCGATTGCAAATTGACCCGTTGGTCTTGTTGATAAGGTTCGATCCGTCTTCTGGATTGGCTTAATATCGCATATTGCCTCTTGGCTATGTGTATTTAACAGTTGATATCCACCAGCTGTGCTAACCCATTTCTACAGTAAATGCATAATACTTGGACCTTCATTATAAGCTTGTTATGTTGTGAGCCTACAATTTGGGAAAATTTGAAGAAAATTGGGATGCGTATATTCTTTTATCTGGTTCGTTAAGAATTTGAAGCTGTCTTTAGCATGCATGTGATGTGGTTAGGAGGATGTTTTGGCTTCACGTTCATTTGGTAATCTGATAGTCAAGAATCTGAGGTGTTCTTAATTTCGGTGTCTGTTGGAGCTGTTACAATCATCAGAAAGTATCTTCATTGTACAAAGTAGCATTGTGTAACCCTTTGTGCTTCGTCTCAAAAGAATTCGCCTGTATCATGCAACATCGGGAGGTGTTTAAACTTATCAAGGGCCAATTGCTTCATGATGGTTACTTCCCTTGGTTGCTTCCTCAAATTTTTGTACAAGTATTGGGTATTGGATAATTGGATCTTATCCATTCATAAGGCCAAGGGAAGTACTTAGTTGGAACAGCGTCCAATCTTATTGCTCTTTATTTTCTCTTTATTTGAAATATGGTGTGTTTTGTAATTTCTTTGGATAATGGGTAGAGAGTATCTTTAGGCCTTTTCCTAATGGACTATGTTGTTTTTCATCAGCTAATTGAGGCATCGTGGCCCTTTACGAGTTTACGGTGGTAGTTACTTCTGTAGTTGAGTTTTATTCTGTGATAACCTGATTTTACTTCTGTGATATTGCCTTGTGTTGCAGAGCTGCTGGTCCGATGAAGCGGCAAGGTAATGCATCAATTGGTGGCAATGTTCATAAGGTATTTGATGATTCACCTTGTAAGATGTAGCTACCTGGTATATCTAGATTTTTTGCCAACAAGAGACAAAATACAGGAGATTTATTTGAGACTCTTGGGCCTGGTTCACATTCTTTTTGTGGGATTATTGTGCTTGGCTTTTGAAACGTTTAATACTTGTGGCTTGCAATGAATTCTTTTATTTTTTTTGTTTTCTATCCAACTGGGAATGGTTGTTGCTGACTTTTGACTCTGATGCTGTATCAATTTCAACAGCTTGACCTCAATTCAAACCCCAACCAACTACCCAGTGCCTCGATTATCCCTATTTTTGTGTGGACAACCAAGACCTTTAATGTGTTGGGGTTTAAATTTTGCAATGCAAACTGATTTGAGGATGTTGGTTGGGGTTTAGATTTTAGAATTTAAGAGTTAGTACATTTTCATGACTTGATTTTTTGTGTAGTGAGTGAGAAATATGATGTGAGGTTTTGAATTCTTGCAGCAACAGCAACGACAACGACAACAGCCACAACAACAACTACGACAACAGCCACAACCACAACGACAGCCACAACATCCATCTCAGAGAGGGGAGAAACCTAAAACATTGGATTCACTGTTTGCCAATATGAAACAGCAGAGGATGCAAGCTTTTGGTCACACAAACAATGGCAGTGCTCATACAAACAATGGAGGTGGTGCTGCTGTTAATCAGCCAAGACAACCATGGCTAAGGGGTCGATTTGGCAACTACAGAAGCTAAGCTAAGCTGATGTTATGAAATCGGGTGAAATTTGCATGTTGGAAATGCGATAAGATTACTTTCGATCTTTGATGTTTCTTTTGCTTTCTGTAGGGCAAATATTACTTTCTATGTTTAACTTTCTCAGTATCACCTTTGATTTCGATTTAAAGTTTACCTTGTACAGCCACTATTTTTCTTTTCTGTTCTCCTTAATGGTTCAATTATGCAGTCATGCCTTTTTGTTAAGATGTTGCATACTTGCGTCAATATTGTTTTTATATTGTACAAATTAAGCAGTGAGATCGATATGATTCAATGGCAAGCGCATGAAATTTACCACCTTTTTATTTACCGTGCAAAACCCTAAACAGAGAAGAAC

mRNA sequence

TCTAGTTTAGTAATATATAGTATTATGATATAATTAGAATTCTAGTATGTTTAGGGAACTAGAGTTTGATTAGTTTAGAAATTTAATAGTCGTATACGCCGACCGTATGAGCTACTTCGTATATACGGAGTAGTCATCTAGGAATAGGAAATACTGTCACCGCGCCCTGCTGTAAGTTGATAAGTTGATCCTCTCCTCTCTCTTGCGAAACTTCTTCCTCACCCATTCACAAAACCGCTCTTATTTTCCAGACTTCCTATAAATCTTGATTTCCCCCTCTTTCTCCTAGTTCGTCAAATTTCGCGAAACCCTAGCCCTAATTTTCAATCGAAAATCTCTCCGATAAACCTTCCTTCTTTCTCAAATTCGTGATTTTTCGCAATTTTTCTGTCGATTTCAGATGGCTATGAAACCACTTACAACCGCGGCTATTGCCCTTACGGAAAAGAAAATGGATATGAGTTTAGACGATATCATCAGGATGTCTAAAACAAATGTTGTCAAGTCCAACAAGCAGAGGGTTCCGAACAAAAGTAAAAAACCTACCAATGGAAAACAAGATAGAGCTTTGAAGACGCGACAATATATGGATTCTAGGTCTACTCTTAGACAGGGGGTTCTTGCCCAGAAAAGGTCCAATTTTCAGGGAAACAATTTCCCTTTGGCATCTGATGCTGCTCGGAAGGTAGCAGCTGCCCCCTTCCGCAATGGAGGTTTTAACCGTAGTAGGGCTGTTAACTGGAACCGACCAAGAGCTGCTGGTCCGATGAAGCGGCAAGGTAATGCATCAATTGGTGGCAATGTTCATAAGCAACAGCAACGACAACGACAACAGCCACAACAACAACTACGACAACAGCCACAACCACAACGACAGCCACAACATCCATCTCAGAGAGGGGAGAAACCTAAAACATTGGATTCACTGTTTGCCAATATGAAACAGCAGAGGATGCAAGCTTTTGGTCACACAAACAATGGCAGTGCTCATACAAACAATGGAGGTGGTGCTGCTGTTAATCAGCCAAGACAACCATGGCTAAGGGGTCGATTTGGCAACTACAGAAGCTAAGCTAAGCTGATGTTATGAAATCGGGTGAAATTTGCATGTTGGAAATGCGATAAGATTACTTTCGATCTTTGATGTTTCTTTTGCTTTCTGTAGGGCAAATATTACTTTCTATGTTTAACTTTCTCAGTATCACCTTTGATTTCGATTTAAAGTTTACCTTGTACAGCCACTATTTTTCTTTTCTGTTCTCCTTAATGGTTCAATTATGCAGTCATGCCTTTTTGTTAAGATGTTGCATACTTGCGTCAATATTGTTTTTATATTGTACAAATTAAGCAGTGAGATCGATATGATTCAATGGCAAGCGCATGAAATTTACCACCTTTTTATTTACCGTGCAAAACCCTAAACAGAGAAGAAC

Coding sequence (CDS)

ATGGCTATGAAACCACTTACAACCGCGGCTATTGCCCTTACGGAAAAGAAAATGGATATGAGTTTAGACGATATCATCAGGATGTCTAAAACAAATGTTGTCAAGTCCAACAAGCAGAGGGTTCCGAACAAAAGTAAAAAACCTACCAATGGAAAACAAGATAGAGCTTTGAAGACGCGACAATATATGGATTCTAGGTCTACTCTTAGACAGGGGGTTCTTGCCCAGAAAAGGTCCAATTTTCAGGGAAACAATTTCCCTTTGGCATCTGATGCTGCTCGGAAGGTAGCAGCTGCCCCCTTCCGCAATGGAGGTTTTAACCGTAGTAGGGCTGTTAACTGGAACCGACCAAGAGCTGCTGGTCCGATGAAGCGGCAAGGTAATGCATCAATTGGTGGCAATGTTCATAAGCAACAGCAACGACAACGACAACAGCCACAACAACAACTACGACAACAGCCACAACCACAACGACAGCCACAACATCCATCTCAGAGAGGGGAGAAACCTAAAACATTGGATTCACTGTTTGCCAATATGAAACAGCAGAGGATGCAAGCTTTTGGTCACACAAACAATGGCAGTGCTCATACAAACAATGGAGGTGGTGCTGCTGTTAATCAGCCAAGACAACCATGGCTAAGGGGTCGATTTGGCAACTACAGAAGCTAA

Protein sequence

MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTRQYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPRAAGPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANMKQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21394.1	Spo21394.1	mRNA

Homology

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BLAST of Spo21394.1 vs. NCBI nr
Match: gi|902225777|gb|KNA20193.1| (hypothetical protein SOVF_054700 isoform B [Spinacia oleracea])

HSP 1 Score: 420.2 bits (1079), Expect = 2.200e-114
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60
           MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR
Sbjct: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60

Query: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPRAA 120
           QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPRAA
Sbjct: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPRAA 120

Query: 121 GPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANM 180
           GPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANM
Sbjct: 121 GPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANM 180

Query: 181 KQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 224
           KQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS
Sbjct: 181 KQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 223

[Close]

BLAST of Spo21394.1 vs. NCBI nr
Match: gi|731330723|ref|XP_010676287.1| (PREDICTED: uncharacterized protein LOC104892146 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 256.1 bits (653), Expect = 5.500e-65
Identity = 157/225 (69.78%), Postives = 172/225 (76.44%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMS-KTNVVKSNKQRVPNKSKKPTNGKQDRALKT 60
           MA KPLTT AIALTEKKMDMSLDDII+MS KTNV K  K R  NK+ K TNG+QDR+LK 
Sbjct: 1   MATKPLTTEAIALTEKKMDMSLDDIIKMSSKTNVGKLKKPRASNKNSKTTNGQQDRSLKI 60

Query: 61  RQYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAA-RKVAAAPFRNGGFNRSRAVNWNRPR 120
           RQYM+SRST+RQGVLAQKRSNFQG  FPLASDAA RK   AP RNGGFNR+R VNWNRPR
Sbjct: 61  RQYMNSRSTMRQGVLAQKRSNFQGK-FPLASDAAARKAVVAPIRNGGFNRNRDVNWNRPR 120

Query: 121 AAGPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFA 180
           AAG M+RQGNASIGGN  KQ Q Q+Q+ QQ        QR    P+Q   KPKTLDS FA
Sbjct: 121 AAGQMRRQGNASIGGNARKQPQHQQQRQQQPF------QRGEMMPNQ---KPKTLDSRFA 180

Query: 181 NMKQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 224
           NMK+QRM+A  +TNNG A        A+NQPRQPWLRGRFGNYRS
Sbjct: 181 NMKEQRMRAVTNTNNGGAVR-----GAINQPRQPWLRGRFGNYRS 210

[Close]

BLAST of Spo21394.1 vs. NCBI nr
Match: gi|731330725|ref|XP_010676288.1| (PREDICTED: uncharacterized protein LOC104892146 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 253.4 bits (646), Expect = 3.600e-64
Identity = 157/225 (69.78%), Postives = 170/225 (75.56%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMS-KTNVVKSNKQRVPNKSKKPTNGKQDRALKT 60
           MA KPLTT AIALTEKKMDMSLDDII+MS KTNV K  K R  NK+ K TNG+QDR+LK 
Sbjct: 1   MATKPLTTEAIALTEKKMDMSLDDIIKMSSKTNVGKLKKPRASNKNSKTTNGQQDRSLKI 60

Query: 61  RQYMDSRSTLRQGVLAQKRSNFQGNNFPLASD-AARKVAAAPFRNGGFNRSRAVNWNRPR 120
           RQYM+SRST+RQGVLAQKRSNFQG  FPLASD AARK   AP RNGGFNR+R VNWNRPR
Sbjct: 61  RQYMNSRSTMRQGVLAQKRSNFQG-KFPLASDAAARKAVVAPIRNGGFNRNRDVNWNRPR 120

Query: 121 AAGPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFA 180
           AAG M+RQGNASIGGN  K Q        QQ RQQ   QR    P+Q   KPKTLDS FA
Sbjct: 121 AAGQMRRQGNASIGGNARKPQ-------HQQQRQQQPFQRGEMMPNQ---KPKTLDSRFA 180

Query: 181 NMKQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 224
           NMK+QRM+A  +TNNG A        A+NQPRQPWLRGRFGNYRS
Sbjct: 181 NMKEQRMRAVTNTNNGGAVR-----GAINQPRQPWLRGRFGNYRS 209

[Close]

BLAST of Spo21394.1 vs. NCBI nr
Match: gi|902225778|gb|KNA20194.1| (hypothetical protein SOVF_054700 isoform C [Spinacia oleracea])

HSP 1 Score: 223.4 bits (568), Expect = 3.900e-55
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60
           MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR
Sbjct: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60

Query: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPR 119
           QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPR
Sbjct: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPR 118

[Close]

BLAST of Spo21394.1 vs. NCBI nr
Match: gi|902225776|gb|KNA20192.1| (hypothetical protein SOVF_054700 isoform A [Spinacia oleracea])

HSP 1 Score: 193.7 bits (491), Expect = 3.300e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


		  
Query: 123 MKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANMKQ 182
           MKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANMKQ
Sbjct: 1   MKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANMKQ 60

Query: 183 QRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 224
           QRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS
Sbjct: 61  QRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 101

[Close]

BLAST of Spo21394.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RL17_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_054700 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 1.500e-114
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60
           MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR
Sbjct: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60

Query: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPRAA 120
           QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPRAA
Sbjct: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPRAA 120

Query: 121 GPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANM 180
           GPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANM
Sbjct: 121 GPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANM 180

Query: 181 KQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 224
           KQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS
Sbjct: 181 KQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 223

[Close]

BLAST of Spo21394.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMQ9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_054700 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.700e-55
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60
           MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR
Sbjct: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQRVPNKSKKPTNGKQDRALKTR 60

Query: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPR 119
           QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPR
Sbjct: 61  QYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPR 118

[Close]

BLAST of Spo21394.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMY4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_054700 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.300e-46
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1


		  
Query: 123 MKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANMKQ 182
           MKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANMKQ
Sbjct: 1   MKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFANMKQ 60

Query: 183 QRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 224
           QRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS
Sbjct: 61  QRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGNYRS 101

[Close]

BLAST of Spo21394.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CIK2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098740 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 3.000e-46
Identity = 114/150 (76.00%), Postives = 124/150 (82.67%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMS-KTNVVKSNKQRVPNKSKKPTNGKQDRALKT 60
           MA KPLTT AIALTEKKMDMSLDDII+MS KTNV K  K R  NK+ K TNG+QDR+LK 
Sbjct: 1   MATKPLTTEAIALTEKKMDMSLDDIIKMSSKTNVGKLKKPRASNKNSKTTNGQQDRSLKI 60

Query: 61  RQYMDSRSTLRQGVLAQKRSNFQGNNFPLASD-AARKVAAAPFRNGGFNRSRAVNWNRPR 120
           RQYM+SRST+RQGVLAQKRSNFQG  FPLASD AARK   AP RNGGFNR+R VNWNRPR
Sbjct: 61  RQYMNSRSTMRQGVLAQKRSNFQG-KFPLASDAAARKAVVAPIRNGGFNRNRDVNWNRPR 120

Query: 121 AAGPMKRQGNASIGGNVHKQQQRQRQQPQQ 149
           AAG M+RQGNASIGGN  KQ Q Q+Q+ QQ
Sbjct: 121 AAGQMRRQGNASIGGNARKQPQHQQQRQQQ 149

[Close]

BLAST of Spo21394.1 vs. UniProtKB/TrEMBL
Match: A0A0B0N5G7_GOSAR (Ribosome maturation factor RimP OS=Gossypium arboreum GN=F383_14822 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.900e-44
Identity = 122/222 (54.95%), Postives = 149/222 (67.12%), Query Frame = 1


		  
Query: 1   MAMKPLTTAAIALTEKKMDMSLDDIIRMSKTNVVKSNKQR-VPNKSKKP-TNGKQDRALK 60
           MA KPLT+ AIALTEKKMDM+LDDII+MSK    KS KQR +PNK ++P +N  +D+ALK
Sbjct: 27  MAAKPLTSEAIALTEKKMDMTLDDIIKMSKNTSHKSKKQRRIPNKIQRPVSNAAKDKALK 86

Query: 61  TRQYMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNRPR 120
            RQYMDSR+++RQGVLAQ+RSNFQGN FP A++AAR+ A AP RN  FN SR  N N+PR
Sbjct: 87  VRQYMDSRASVRQGVLAQRRSNFQGNRFPFAAEAARRAAVAPIRNRAFNTSRVGNLNKPR 146

Query: 121 AAGPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFA 180
              P   Q  A+ GG   K        PQQQL+QQ Q Q+  Q      ++PKTLDSLFA
Sbjct: 147 VGRPPV-QRRAANGGFTAK--------PQQQLQQQ-QLQQDQQENIVTKQRPKTLDSLFA 206

Query: 181 NMKQQRMQAFGHTNNGSAHTNNGGGAAVNQPRQPWLRGRFGN 221
           NMK++R++   H NNG      G      + R PW RGRFGN
Sbjct: 207 NMKEERLRVLSHQNNGVQPNGRG------RQRMPWGRGRFGN 232

[Close]

BLAST of Spo21394.1 vs. TAIR (Arabidopsis)
Match: AT4G10970.6 (unknown protein)

HSP 1 Score: 90.5 bits (223), Expect = 1.400e-18
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1


		  
Query: 18  MDMSLDDIIRMSK--TNVVKSNKQRVPNKSKKPTNGKQDRALKTRQYMDSRSTLRQGVLA 77
           MDMSLD+II+M K  TNV K  KQRV NK +K +   ++ A+K ++YMDSRS +RQG  A
Sbjct: 1   MDMSLDEIIKMEKSNTNVNKGKKQRVLNKKEKFSGAAKNSAVKAQRYMDSRSDVRQGAFA 60

Query: 78  QKRSNFQGNNFPLASDAARKVAAAPFRNGGFNRSRAVNWNR 117
           +KRSNFQGN FP+ +  ARK A+A  R   +N  R  N N+
Sbjct: 61  KKRSNFQGNQFPVTTTVARKAASATPRGRPYNGGRMTNTNQ 101

[Close]

BLAST of Spo21394.1 vs. TAIR (Arabidopsis)
Match: AT4G23910.1 (unknown protein)

HSP 1 Score: 87.8 bits (216), Expect = 9.100e-18
Identity = 81/220 (36.82%), Postives = 113/220 (51.36%), Query Frame = 1


		  
Query: 5   PLTTAAIALTEKKMDMSLDDIIRMSK--TNVVKSNK-QRVPNKSKKPTNGKQDRALKTRQ 64
           PL    IALTEKK+ M+LDDII+++K  TNV K  K +R  NK++      ++     R 
Sbjct: 6   PLIAETIALTEKKVAMALDDIIKLAKRKTNVNKGKKPRREKNKNQNFNGAARNNTSNVRH 65

Query: 65  YMDSRSTLRQGVLAQKRSNFQGNNFPLASDAARKVA-AAP--FRNGGFNRSRAVNWNRPR 124
           +M+S S +RQG + ++RS FQG  FP+ ++ ARK + AAP  FR   FN  R  + N+ R
Sbjct: 66  HMNSLSAVRQGAVGKRRSRFQGIQFPVTTNIARKASTAAPLDFRGRAFNGGRMTSANQSR 125

Query: 125 AAGPMKRQGNASIGGNVHKQQQRQRQQPQQQLRQQPQPQRQPQHPSQRGEKPKTLDSLFA 184
              P  +  N S+   V+ ++    Q+ +                  RG K KTLDS FA
Sbjct: 126 LIAPPVQ--NISVQARVNAKRHEVDQKVE-----------------HRGGKRKTLDSRFA 185

Query: 185 NMKQQRMQAFGHTNNGSAHTNNGGGAAVNQPR-QPWLRGR 218
           +MK+QRM            T N  G  V  PR  PW+R R
Sbjct: 186 SMKEQRM------------TINNYGVTVQVPRLPPWVRAR 194

The following BLAST results are available for this feature:

BLAST of Spo21394.1 vs. NCBI nr
BLAST of Spo21394.1 vs. UniProtKB/TrEMBL
BLAST of Spo21394.1 vs. ExPASy Swiss-Prot
BLAST of Spo21394.1 vs. TAIR (Arabidopsis)

BLAST of Spo21394.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902225777\|gb\|KNA20193.1\|	2.2e-114	100.	hypothetical protein SOVF_0547...	[more]
gi\|731330723\|ref\|XP_010676287.1\|	5.5e-65	69.7	PREDICTED: uncharacterized pro...	[more]
gi\|731330725\|ref\|XP_010676288.1\|	3.6e-64	69.7	PREDICTED: uncharacterized pro...	[more]
gi\|902225778\|gb\|KNA20194.1\|	3.9e-55	100.	hypothetical protein SOVF_0547...	[more]
gi\|902225776\|gb\|KNA20192.1\|	3.3e-46	100.	hypothetical protein SOVF_0547...	[more]

BLAST of Spo21394.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RL17_SPIOL	1.5e-114	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RMQ9_SPIOL	2.7e-55	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RMY4_SPIOL	2.3e-46	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CIK2_BETVU	3.0e-46	76.0	Uncharacterized protein OS=Bet...	[more]
A0A0B0N5G7_GOSAR	2.9e-44	54.9	Ribosome maturation factor Rim...	[more]

BLAST of Spo21394.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo21394.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G10970.6	1.4e-18	52.4	unknown protein	[more]
AT4G23910.1	9.1e-18	36.8	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36048	FAMILY NOT NAMED	coord: 1..222 score: 1.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006396	RNA processing
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0019643	reductive tricarboxylic acid cycle
biological_process	GO:0009651	response to salt stress
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0098655	cation transmembrane transport
biological_process	GO:0043933	protein-containing complex subunit organization
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0048825	cotyledon development
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0048571	long-day photoperiodism
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0009744	response to sucrose
biological_process	GO:0009611	response to wounding
biological_process	GO:0016246	RNA interference
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0006996	organelle organization
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0010104	regulation of ethylene-activated signaling pathway
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0000186	activation of MAPKK activity
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process	GO:0009252	peptidoglycan biosynthetic process
biological_process	GO:0009736	cytokinin-activated signaling pathway
biological_process	GO:0030001	metal ion transport
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006629	lipid metabolic process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0000124	SAGA complex
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0000932	P-body
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005669	transcription factor TFIID complex
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009316	3-isopropylmalate dehydratase complex
molecular_function	GO:0003975	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity
molecular_function	GO:0008963	phospho-N-acetylmuramoyl-pentapeptide-transferase activity
molecular_function	GO:0019829	cation-transporting ATPase activity
molecular_function	GO:0003861	3-isopropylmalate dehydratase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004709	MAP kinase kinase kinase activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0003994	aconitate hydratase activity
molecular_function	GO:0050486	intramolecular transferase activity, transferring hydroxy groups
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03878	0.75	Barchart \| Table
Spo18001	0.75	Barchart \| Table
Spo15477	0.75	Barchart \| Table
Spo22091	0.73	Barchart \| Table
Spo12084	0.73	Barchart \| Table
Spo21629	0.73	Barchart \| Table
Spo21458	0.72	Barchart \| Table
Spo06873	0.71	Barchart \| Table
Spo20231	0.71	Barchart \| Table
Spo01128	0.71	Barchart \| Table
Spo21859	0.71	Barchart \| Table
Spo02105	0.70	Barchart \| Table
Spo24190	0.70	Barchart \| Table
Spo09998	0.70	Barchart \| Table
Spo11693	0.69	Barchart \| Table
Spo04409	0.69	Barchart \| Table
Spo08380	0.68	Barchart \| Table
Spo20186	0.68	Barchart \| Table
Spo02208	0.68	Barchart \| Table
Spo16679	0.68	Barchart \| Table
Spo14432	0.68	Barchart \| Table
Spo21444	0.68	Barchart \| Table
Spo01391	0.68	Barchart \| Table
Spo20463	0.67	Barchart \| Table
Spo00893	0.67	Barchart \| Table
Spo04114	0.67	Barchart \| Table
Spo05110	0.67	Barchart \| Table
Spo07969	0.67	Barchart \| Table
Spo00444	0.67	Barchart \| Table
Spo13250	0.67	Barchart \| Table
Spo24373	0.67	Barchart \| Table
Spo28173	0.66	Barchart \| Table
Spo02470	0.66	Barchart \| Table
Spo09003	0.66	Barchart \| Table
Spo14513	0.66	Barchart \| Table
Spo15160	0.66	Barchart \| Table
Spo19394	0.66	Barchart \| Table
Spo21605	0.66	Barchart \| Table
Spo23732	0.66	Barchart \| Table
Spo26108	0.66	Barchart \| Table
Spo26726	0.66	Barchart \| Table
Spo27269	0.65	Barchart \| Table
Spo09711	0.65	Barchart \| Table
Spo20904	0.65	Barchart \| Table
Spo18212	0.65	Barchart \| Table