Spo21405 (gene) | SpinachBase

Overview


Name	Spo21405
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 39076588 .. 39078261 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGAATTTCTTCGACAAAATTGGGGTAATGTTAATGTCAATATACGAGTAAATAGTCTTTTAAAGCTTCCTATTTTTCATGACTAGATTTTGAAGTTGCTCTTCAATTTGTTTGCTCAAGTGCTCATTCTTTTTATCTACACCGTCCAAACTGATATATTCCTCCTTTCCATTACAGTTATCCTCTGCAGCTGATCTCTAGCAGTTATTCTGAACCACTTGCGCTTTTATATCGATTTTTATAAACAAAGAATCTTACTACTTTGTGCCTTCTATAAATTGTTGCAGGTCCCTCAACAGCATCAAGCAAGAAAAAAAACTCAAAAGGAAATCTCATCAAATAAAAATCCTTCAACATTCTCAATATAATGGTCTCATCCAAACTGCAAAAACCCACAAATGAAGAACACAAATTTACACAGAAAATATCAGAGGTGACTGCTTGGGGAAACAGGATGCTTGGACACAAACAACAGGAACACCAAGCAGTGGCCAAACACTGTACCACATGCAAGTGCCCAGCACCGAAAGACACAAAACCAACATGTACTCACATACAGAAGAGAGAACATGCTAGCACCGTAGCTGCCAAAGACATGAAATCCAGTGCGTACACTGAGACAAAGAAGAAAGAAAAGGAAGGACATCCAAGTACAGTCCATAAGGATGCCAAACATACTTCTTGCATTGAGCTGAAGAAGAAGGAAAAGCAGCAAACAACAAATGTTCAAACAAAGGATTCTGAGCAGCCTGTTGGTGCTGAGATGAAGAAGACGGACAAGAAGGAACAACATGCAAAAGGCAACACAACTAACACATTGAGCAAGAAAGTTCACAAGGATGAACCAACCAACCACTGGTTTTCAAGCATGGCAGATCATTGGAAGGAGAAGATCATGATGATGAAGAAGGCCAAGGAAGGCAAGTCAAAAGATAGCAGTAGCACCAGTGACAGCGACAGTGAAGAAGAGTCCTGTGGGATAATAAAGGTATGTATTCAAAATTTTCAAATAGAAGATATCCCCTCAACTTCCTACACCAACTTCCCAGCATGAATCCCACAAATATCTGCATATTGCTAGTAAACATGCATAGCAGAGGCCAGAGAGTGCATGAAAGAAATTATAGAAGGCCTTCTTTTGTAGTCTACTATTAGAATTCCTTGTCTAAAGTCCATTCCACCCCTTTTCCTCCCACTCCCCCTCCCTCTAAATCCTCCCCTCGAAGTTGTGACCTTCTTGACTGTCCAACCCATGCAATTTGATTTATTTATTTATTTTTGCCTTACCTTGCAGACAGACAAGAGACACTACCAAGGGACCAAAACCTCGTCTAAGTGAAAGAGGCTACTGCAGAATCAACAAGGAACAAGATAATAAGGAACTATGGACCGTATAGTATTGCTTAAGTACAAGCTTTTATAATTTGATTTCCTATTTCCTCTAATTCCAATTACTTCAAATATTAATTTCGAACAATAAGATTCTTTACCTATTTTAAGATAGAATTTTCTTTTAGTTTATGAATGTCTTACTGTTTGTAAAAGCTTACCGTTATGGTCATCTTACAACTGGAACATAGACTTGGTTGTGCATTGTCACATATTACGGAGTACTAGTTTACTAATTACTAAAAGTATTTTTTTCTCAATTATGGTCAAGAACCAACCCCGCA

mRNA sequence

TAAGAATTTCTTCGACAAAATTGGGGTCCCTCAACAGCATCAAGCAAGAAAAAAAACTCAAAAGGAAATCTCATCAAATAAAAATCCTTCAACATTCTCAATATAATGGTCTCATCCAAACTGCAAAAACCCACAAATGAAGAACACAAATTTACACAGAAAATATCAGAGGTGACTGCTTGGGGAAACAGGATGCTTGGACACAAACAACAGGAACACCAAGCAGTGGCCAAACACTGTACCACATGCAAGTGCCCAGCACCGAAAGACACAAAACCAACATGTACTCACATACAGAAGAGAGAACATGCTAGCACCGTAGCTGCCAAAGACATGAAATCCAGTGCGTACACTGAGACAAAGAAGAAAGAAAAGGAAGGACATCCAAGTACAGTCCATAAGGATGCCAAACATACTTCTTGCATTGAGCTGAAGAAGAAGGAAAAGCAGCAAACAACAAATGTTCAAACAAAGGATTCTGAGCAGCCTGTTGGTGCTGAGATGAAGAAGACGGACAAGAAGGAACAACATGCAAAAGGCAACACAACTAACACATTGAGCAAGAAAGTTCACAAGGATGAACCAACCAACCACTGGTTTTCAAGCATGGCAGATCATTGGAAGGAGAAGATCATGATGATGAAGAAGGCCAAGGAAGGCAAGTCAAAAGATAGCAGTAGCACCAGTGACAGCGACAGTGAAGAAGAGTCCTGTGGGATAATAAAGACAGACAAGAGACACTACCAAGGGACCAAAACCTCGTCTAAGTGAAAGAGGCTACTGCAGAATCAACAAGGAACAAGATAATAAGGAACTATGGACCGTATAGTATTGCTTAAGTACAAGCTTTTATAATTTGATTTCCTATTTCCTCTAATTCCAATTACTTCAAATATTAATTTCGAACAATAAGATTCTTTACCTATTTTAAGATAGAATTTTCTTTTAGTTTATGAATGTCTTACTGTTTGTAAAAGCTTACCGTTATGGTCATCTTACAACTGGAACATAGACTTGGTTGTGCATTGTCACATATTACGGAGTACTAGTTTACTAATTACTAAAAGTATTTTTTTCTCAATTATGGTCAAGAACCAACCCCGCA

Coding sequence (CDS)

ATGGTCTCATCCAAACTGCAAAAACCCACAAATGAAGAACACAAATTTACACAGAAAATATCAGAGGTGACTGCTTGGGGAAACAGGATGCTTGGACACAAACAACAGGAACACCAAGCAGTGGCCAAACACTGTACCACATGCAAGTGCCCAGCACCGAAAGACACAAAACCAACATGTACTCACATACAGAAGAGAGAACATGCTAGCACCGTAGCTGCCAAAGACATGAAATCCAGTGCGTACACTGAGACAAAGAAGAAAGAAAAGGAAGGACATCCAAGTACAGTCCATAAGGATGCCAAACATACTTCTTGCATTGAGCTGAAGAAGAAGGAAAAGCAGCAAACAACAAATGTTCAAACAAAGGATTCTGAGCAGCCTGTTGGTGCTGAGATGAAGAAGACGGACAAGAAGGAACAACATGCAAAAGGCAACACAACTAACACATTGAGCAAGAAAGTTCACAAGGATGAACCAACCAACCACTGGTTTTCAAGCATGGCAGATCATTGGAAGGAGAAGATCATGATGATGAAGAAGGCCAAGGAAGGCAAGTCAAAAGATAGCAGTAGCACCAGTGACAGCGACAGTGAAGAAGAGTCCTGTGGGATAATAAAGACAGACAAGAGACACTACCAAGGGACCAAAACCTCGTCTAAGTGA

Protein sequence

MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTCTHIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNVQTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTNHWFSSMADHWKEKIMMMKKAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21405.1	Spo21405.1	mRNA

Homology

[Close]

BLAST of Spo21405.1 vs. NCBI nr
Match: gi|902221268|gb|KNA18863.1| (hypothetical protein SOVF_066640 [Spinacia oleracea])

HSP 1 Score: 430.3 bits (1105), Expect = 2.100e-117
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M SSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC
Sbjct: 1   MASSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
           THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV
Sbjct: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTNHWFSSMADHWKEKIMMMK 180
           QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPT+HWFSSMADHWKEKIMMMK
Sbjct: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTSHWFSSMADHWKEKIMMMK 180

Query: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 222
           KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK
Sbjct: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 221

[Close]

BLAST of Spo21405.1 vs. NCBI nr
Match: gi|731330768|ref|XP_010676310.1| (PREDICTED: nucleolar protein 58-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 288.1 bits (736), Expect = 1.300e-74
Identity = 155/216 (71.76%), Postives = 179/216 (82.87%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M S+KLQKPTNEEHKF+QKISEVTAWGNR+ G KQQEHQAVAKHCTTC CPA KDTKP C
Sbjct: 1   MASTKLQKPTNEEHKFSQKISEVTAWGNRVFGQKQQEHQAVAKHCTTCHCPASKDTKPAC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
             +QK+E+A+T++ KDMKS A+  TKKKE   H ST+HKDAKHT+C ELKK+EKQ T N 
Sbjct: 61  NDLQKKENANTISVKDMKSDAHAVTKKKE---HASTIHKDAKHTTCAELKKEEKQHTANF 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTT---NTLSKKVHKDEPT-NHWFSSMADHWKEKI 180
           Q+KDS++P GAE+KK +KKE HAK NTT   NTL KK HKDEPT NH FSSMADHWKEKI
Sbjct: 121 QSKDSKKPAGAEIKK-EKKEHHAKSNTTTACNTLVKKEHKDEPTNNHCFSSMADHWKEKI 180

Query: 181 MMMKKAKEGKSKDSSSTSDSDSEEESCGIIKTDKRH 213
           MMMKKAK+GK KD+SS+S SDSE+++  I K DKRH
Sbjct: 181 MMMKKAKDGKCKDNSSSSGSDSEDDASVIKKKDKRH 212

[Close]

BLAST of Spo21405.1 vs. NCBI nr
Match: gi|902233720|gb|KNA23179.1| (hypothetical protein SOVF_027070 [Spinacia oleracea])

HSP 1 Score: 102.1 bits (253), Expect = 1.300e-18
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 1

		  
Query: 83  TETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNVQTKDSEQPVGAEMKKTDKKEQH 142
           T  K+++KE H +TVHKDAKHTS IEL KKE +QTTNVQTK         MKK +KKE+H
Sbjct: 4   TRRKRRKKEEHVNTVHKDAKHTSRIEL-KKENKQTTNVQTKGFCAACWCWMKKKEKKEKH 63

Query: 143 AKGNTTNT---LSKKVHKDEPTNHWFSSMADHWKEKIM 178
           AK  TTN+   LSKK HK EPTN  FSSM DHWKEKI+
Sbjct: 64  AKSKTTNSCNALSKKEHKKEPTNQCFSSMEDHWKEKIL 100

[Close]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH88_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066640 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.500e-117
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M SSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC
Sbjct: 1   MASSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
           THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV
Sbjct: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTNHWFSSMADHWKEKIMMMK 180
           QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPT+HWFSSMADHWKEKIMMMK
Sbjct: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTSHWFSSMADHWKEKIMMMK 180

Query: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 222
           KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK
Sbjct: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 221

[Close]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEI0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099010 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.000e-75
Identity = 155/216 (71.76%), Postives = 179/216 (82.87%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M S+KLQKPTNEEHKF+QKISEVTAWGNR+ G KQQEHQAVAKHCTTC CPA KDTKP C
Sbjct: 1   MASTKLQKPTNEEHKFSQKISEVTAWGNRVFGQKQQEHQAVAKHCTTCHCPASKDTKPAC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
             +QK+E+A+T++ KDMKS A+  TKKKE   H ST+HKDAKHT+C ELKK+EKQ T N 
Sbjct: 61  NDLQKKENANTISVKDMKSDAHAVTKKKE---HASTIHKDAKHTTCAELKKEEKQHTANF 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTT---NTLSKKVHKDEPT-NHWFSSMADHWKEKI 180
           Q+KDS++P GAE+KK +KKE HAK NTT   NTL KK HKDEPT NH FSSMADHWKEKI
Sbjct: 121 QSKDSKKPAGAEIKK-EKKEHHAKSNTTTACNTLVKKEHKDEPTNNHCFSSMADHWKEKI 180

Query: 181 MMMKKAKEGKSKDSSSTSDSDSEEESCGIIKTDKRH 213
           MMMKKAK+GK KD+SS+S SDSE+++  I K DKRH
Sbjct: 181 MMMKKAKDGKCKDNSSSSGSDSEDDASVIKKKDKRH 212

[Close]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RW96_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_027070 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.200e-19
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 1

		  
Query: 83  TETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNVQTKDSEQPVGAEMKKTDKKEQH 142
           T  K+++KE H +TVHKDAKHTS IEL KKE +QTTNVQTK         MKK +KKE+H
Sbjct: 4   TRRKRRKKEEHVNTVHKDAKHTSRIEL-KKENKQTTNVQTKGFCAACWCWMKKKEKKEKH 63

Query: 143 AKGNTTNT---LSKKVHKDEPTNHWFSSMADHWKEKIM 178
           AK  TTN+   LSKK HK EPTN  FSSM DHWKEKI+
Sbjct: 64  AKSKTTNSCNALSKKEHKKEPTNQCFSSMEDHWKEKIL 100

The following BLAST results are available for this feature:

BLAST of Spo21405.1 vs. NCBI nr
BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
BLAST of Spo21405.1 vs. ExPASy Swiss-Prot
BLAST of Spo21405.1 vs. TAIR (Arabidopsis)

BLAST of Spo21405.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902221268\|gb\|KNA18863.1\|	2.1e-117	99.1	hypothetical protein SOVF_0666...	[more]
gi\|731330768\|ref\|XP_010676310.1\|	1.3e-74	71.7	PREDICTED: nucleolar protein 5...	[more]
gi\|902233720\|gb\|KNA23179.1\|	1.3e-18	63.2	hypothetical protein SOVF_0270...	[more]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RH88_SPIOL	1.5e-117	99.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8CEI0_BETVU	9.0e-75	71.7	Uncharacterized protein OS=Bet...	[more]
A0A0K9RW96_SPIOL	9.2e-19	63.2	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo21405.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21405.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0040029	regulation of gene expression, epigenetic
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051258	protein polymerization
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0071258	cellular response to gravity
biological_process	GO:0006396	RNA processing
biological_process	GO:0006508	proteolysis
biological_process	GO:0008152	metabolic process
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0048364	root development
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0001510	RNA methylation
biological_process	GO:0048366	leaf development
biological_process	GO:0016458	gene silencing
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0000478	endonucleolytic cleavage involved in rRNA processing
biological_process	GO:0043481	anthocyanin accumulation in tissues in response to UV light
biological_process	GO:0050896	response to stimulus
biological_process	GO:0000957	mitochondrial RNA catabolic process
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0043419	urea catabolic process
biological_process	GO:0008033	tRNA processing
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0042991	obsolete transcription factor import into nucleus
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0000963	mitochondrial RNA processing
biological_process	GO:0009099	valine biosynthetic process
biological_process	GO:0048440	carpel development
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006450	regulation of translational fidelity
biological_process	GO:0010498	proteasomal protein catabolic process
biological_process	GO:0009098	leucine biosynthetic process
biological_process	GO:0006428	isoleucyl-tRNA aminoacylation
biological_process	GO:0009097	isoleucine biosynthetic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0007010	cytoskeleton organization
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0009908	flower development
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0022402	cell cycle process
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0007346	regulation of mitotic cell cycle
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0010048	vernalization response
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0016233	telomere capping
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009845	seed germination
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0050826	response to freezing
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0019915	lipid storage
biological_process	GO:0002100	tRNA wobble adenosine to inosine editing
biological_process	GO:0022618	ribonucleoprotein complex assembly
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0051321	meiotic cell cycle
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005732	small nucleolar ribonucleoprotein complex
cellular_component	GO:0016363	nuclear matrix
cellular_component	GO:0015030	Cajal body
cellular_component	GO:0000781	chromosome, telomeric region
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005618	cell wall
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009505	plant-type cell wall
cellular_component	GO:0000176	nuclear exosome (RNase complex)
cellular_component	GO:0030870	Mre11 complex
cellular_component	GO:0048046	apoplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0002161	aminoacyl-tRNA editing activity
molecular_function	GO:0004822	isoleucine-tRNA ligase activity
molecular_function	GO:0000175	3'-5'-exoribonuclease activity
molecular_function	GO:0016151	nickel cation binding
molecular_function	GO:0004654	polyribonucleotide nucleotidyltransferase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0008251	tRNA-specific adenosine deaminase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004534	5'-3' exoribonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0009982	pseudouridine synthase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo00670	0.72	Barchart \| Table
Spo14545	0.72	Barchart \| Table
Spo17085	0.72	Barchart \| Table
Spo15656	0.72	Barchart \| Table
Spo27208	0.71	Barchart \| Table
Spo07307	0.70	Barchart \| Table
Spo03053	0.70	Barchart \| Table
Spo03627	0.70	Barchart \| Table
Spo10080	0.70	Barchart \| Table
Spo05941	0.70	Barchart \| Table
Spo23866	0.69	Barchart \| Table
Spo05213	0.69	Barchart \| Table
Spo06635	0.69	Barchart \| Table
Spo22525	0.69	Barchart \| Table
Spo10889	0.68	Barchart \| Table
Spo06431	0.68	Barchart \| Table
Spo26452	0.68	Barchart \| Table
Spo23630	0.68	Barchart \| Table
Spo20914	0.68	Barchart \| Table
Spo14910	0.68	Barchart \| Table
Spo13318	0.68	Barchart \| Table
Spo27104	0.67	Barchart \| Table
Spo01839	0.67	Barchart \| Table
Spo18120	0.67	Barchart \| Table
Spo20749	0.67	Barchart \| Table
Spo21421	0.67	Barchart \| Table
Spo21474	0.67	Barchart \| Table
Spo00034	0.67	Barchart \| Table
Spo23939	0.67	Barchart \| Table
Spo24841	0.67	Barchart \| Table
Spo25607	0.67	Barchart \| Table
Spo01612	0.66	Barchart \| Table
Spo23847	0.66	Barchart \| Table
Spo11756	0.66	Barchart \| Table
Spo09959	0.66	Barchart \| Table
Spo13695	0.66	Barchart \| Table
Spo04421	0.66	Barchart \| Table
Spo09382	0.66	Barchart \| Table
Spo07654	0.66	Barchart \| Table
Spo07049	0.66	Barchart \| Table
Spo05076	0.66	Barchart \| Table
Spo00637	0.66	Barchart \| Table
Spo04669	0.66	Barchart \| Table
Spo19388	0.65	Barchart \| Table
Spo16992	0.65	Barchart \| Table
Spo07697	0.65	Barchart \| Table
Spo04988	0.65	Barchart \| Table
Spo13204	0.65	Barchart \| Table
Spo21648	0.65	Barchart \| Table