Spo21410 (gene)

Overview
NameSpo21410
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 39060494 .. 39062956 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACTTGATTTAATTGATGCCATACATCCATAGTCATCAGTATGAACGTAATAGGCATCTAACATAATCCAAAAGACCTTCAATGTATGAGCAGAATAAAGGTATTCGGTCAAGGCTTAAAAGCAGCAAAAGAACCTCTAAATATTCCCAATTTCACTACTATATAAGCACACCATCTTTCCCTCTTAAATATCACCAAACAAACAAAAAACCACAAAGTACCTGACTACTACTAAGCAATGGCATACCAAGGAAACAACTACTATGAGCGGGAGGTCATCCGTGACAGCCCATGTGACTCTTACTCTGAGTACAGCAGGGTTGAGGGTGGATATGGAAGGCCTGCAGGCTACCCAATTGGCCACCAGCTACCCCACCACCACAACCACAACAATGTGGTGACTGATGTTGTATATGAGACCAGCACCATTCCTAGGTATGGACACCACCACCACCACCACGGCGGTGCTGAGGTTGTTCAGAGGCAGGAAGAGAGGATTGTTTATGAAAATGATTTCGACCCATGCAGGAGGGTATGTGTTTAAACATCAATTTTATTTTACTCAACTGGCTTATATTTTTTAATCATAATATTTCTGCCAGCCAATTTTCCCCGAGTAATGATCTTTCTTGTTTGCAGATGTACTAGATTAGTGCACCAAATCTTCTCGTGTCTGCAAGATCTAACATCAAGTGCTCAAGTATGGGTATTAGTATAATAAATTTCCCCTAAGCCATTACAGATGGTCTGTTTGCTACTAAATATTGCAGGATGCTTCTTCTACTACCATATATTGGTACTATTATTTGTAATGTATTTGACTATTCCAGTGAATTAATATGGCATTTTCGTTTAAAAAGAAGAAAGGATTATGTTCCGACTTCCGACTCCTGACATGGAATTACAGTAGCTTTGCATATTCGAGAACTACACAGAACTGATAATAGTAAAAAAAAACACTTAATCCCCTAGTAACAGAATTAATCCCATGATGTACCAATATATAAGATGATGCCTTTTGGCTTCTAAGTATTAATATTCATCATCAACAACTAAATAACTAATTTGAGTACCTACGGTAGTTTCAATCACAGAATCACAAATGTAAAAGTGCTAATACAAGTTTACTCACAATCTGCATGCTCTACGAGGAAGACAAAGAAAAAAAAATTAGCTGCCAAAGTCATGACATTCTTGATTACCTCCAATGCTATCAAACAATCGACAACGAAACCGGTCATACAGACATACAGTATGAATAAAACGAGTCACATATTGATCAATGGTTGAAACTTGAAAGCAACCCATCAACCAGTGGTCTGTGTTAAATATGCCTGCGAGAAACATTATGCAAATATTCCGTTCCCGTGCAATCTTACATAATATTAACCACTGAAGTAGTTTTCATTCTAGCTCCCAGCATTACTTGTTAAGAAGTAAAATAGTGAAAAAGACTTCAATTATTTCAGATATACCATATGTCCATATTACTATGAAGGTAAGGAACAGCTAAGAATAAATGCAAGAATGTCCTACACCCAAAGAGCGGAACACAACAGAATTTCCCTGCTCGGGAAAATAAAGTTGGATTTAACCCATAAAAGCAAGCAATAGACTGAATTACTCCCATTTTCACAACTGCGCTTCCAGCTTAAGCAACTTGACCTCAAAGATGCCAAAAAATTTCACCGAAAGGTAATTGAGTCCTACAAGCAGTTTAAACAGCTCTCACTAAATAAGCAAGATGATATTCAACCAAGACATACTAAGCAGACAAATGGAAATAAAAAAATATTCCACTTCATCACTATTTAGGATTAAAGGCATATCATTTCCCTCTCATCTCATCAAGCCAAACAAACCCAAAAATATAAAAATTAACACAGTTTTAGGCAACTAGCAAGTCTCAGTGTCTCGTTATAGTGGCTTACTACAGAATCAAATATTTCAGTGATGATGAGAGGGAAACCATACCTGATGGCCCTTATGATTCATGTTCTGGGATCTGGATACATCATGGTTGAGACTGGAATGGCAGGTGAACAATGTTGTGTACAAGGCCCACAGCATCCCTAGGTAGGAGCACCACCATCATGATGGAGCTGCAGAGGTTGTTAAGGAGGGCTTTATTTGGGTGAATGACTAGGGAGAGTATGTGTTCCAGCCGTCTACGTGACCAGCTTCGGCCTCTGAAGCCTGAACTTTTTTCTTTGATAAATTTGTCACCTACTTTTCTTTTGAAGCACTCTTTCCCAGTCCTGCAGATTTGCTAAACTAGCACTGCACATGAGTTCCTGCATACAAGTTTCGAGTCATTGACGAGAAGCATGAATAATATTAGTAGAATAAAATGCCTCCGAGTATTAGGCAATATGCTAGTGACTTTCTAGCATGTGCACTCTGCTCACTTGTACCGCTTGTGGCCTTGTGGGAGCTAGAGGTGCTTAGACCAATATTACGCTA

mRNA sequence

AACTTGATTTAATTGATGCCATACATCCATAGTCATCAGTATGAACGTAATAGGCATCTAACATAATCCAAAAGACCTTCAATGTATGAGCAGAATAAAGGTATTCGGTCAAGGCTTAAAAGCAGCAAAAGAACCTCTAAATATTCCCAATTTCACTACTATATAAGCACACCATCTTTCCCTCTTAAATATCACCAAACAAACAAAAAACCACAAAGTACCTGACTACTACTAAGCAATGGCATACCAAGGAAACAACTACTATGAGCGGGAGGTCATCCGTGACAGCCCATGTGACTCTTACTCTGAGTACAGCAGGGTTGAGGGTGGATATGGAAGGCCTGCAGGCTACCCAATTGGCCACCAGCTACCCCACCACCACAACCACAACAATGTGGTGACTGATGTTGTATATGAGACCAGCACCATTCCTAGGTATGGACACCACCACCACCACCACGGCGGTGCTGAGGTTGTTCAGAGGCAGGAAGAGAGGATTGTTTATGAAAATGATTTCGACCCATGCAGGAGGATGTACTAGATTAGTGCACCAAATCTTCTCGTGTCTGCAAGATCTAACATCAAGTGCTCAAGTATGGGTATTAGTATAATAAATTTCCCCTAAGCCATTACAGATGGTCTGTTTGCTACTAAATATTGCAGGATGCTTCTTCTACTACCATATATTGGTACTATTATTTGTAATGTATTTGACTATTCCAGTGAATTAATATGGCATTTTCGTTTAAAAAGAAGAAAGGATTATGTTCCGACTTCCGACTCCTGACATGGAATTACAGTAGCTTTGCATATTCGAGAACTACACAGAACTGATAATAGTAAAAAAAAACACTTAATCCCCTAGTAACAGAATTAATCCCATGATGTACCAATATATAAGATGATGCCTTTTGGCTTCTAAGTATTAATATTCATCATCAACAACTAAATAACTAATTTGAGTACCTACGGTAGTTTCAATCACAGAATCACAAATGTAAAAGTGCTAATACAAGTTTACTCACAATCTGCATGCTCTACGAGGAAGACAAAGAAAAAAAAATTAGCTGCCAAAGTCATGACATTCTTGATTACCTCCAATGCTATCAAACAATCGACAACGAAACCGGTCATACAGACATACAGTATGAATAAAACGAGTCACATATTGATCAATGGTTGAAACTTGAAAGCAACCCATCAACCAGTGGTCTGTGTTAAATATGCCTGCGAGAAACATTATGCAAATATTCCGTTCCCGTGCAATCTTACATAATATTAACCACTGAAGTAGTTTTCATTCTAGCTCCCAGCATTACTTGTTAAGAAGTAAAATAGTGAAAAAGACTTCAATTATTTCAGATATACCATATGTCCATATTACTATGAAGGTAAGGAACAGCTAAGAATAAATGCAAGAATGTCCTACACCCAAAGAGCGGAACACAACAGAATTTCCCTGCTCGGGAAAATAAAGTTGGATTTAACCCATAAAAGCAAGCAATAGACTGAATTACTCCCATTTTCACAACTGCGCTTCCAGCTTAAGCAACTTGACCTCAAAGATGCCAAAAAATTTCACCGAAAGGTAATTGAGTCCTACAAGCAGTTTAAACAGCTCTCACTAAATAAGCAAGATGATATTCAACCAAGACATACTAAGCAGACAAATGGAAATAAAAAAATATTCCACTTCATCACTATTTAGGATTAAAGGCATATCATTTCCCTCTCATCTCATCAAGCCAAACAAACCCAAAAATATAAAAATTAACACAGTTTTAGGCAACTAGCAAGTCTCAGTGTCTCGTTATAGTGGCTTACTACAGAATCAAATATTTCAGTGATGATGAGAGGGAAACCATACCTGATGGCCCTTATGATTCATGTTCTGGGATCTGGATACATCATGGTTGAGACTGGAATGGCAGGTGAACAATGTTGTGTACAAGGCCCACAGCATCCCTAGGTAGGAGCACCACCATCATGATGGAGCTGCAGAGGTTGTTAAGGAGGGCTTTATTTGGGTGAATGACTAGGGAGAGTATGTGTTCCAGCCGTCTACGTGACCAGCTTCGGCCTCTGAAGCCTGAACTTTTTTCTTTGATAAATTTGTCACCTACTTTTCTTTTGAAGCACTCTTTCCCAGTCCTGCAGATTTGCTAAACTAGCACTGCACATGAGTTCCTGCATACAAGTTTCGAGTCATTGACGAGAAGCATGAATAATATTAGTAGAATAAAATGCCTCCGAGTATTAGGCAATATGCTAGTGACTTTCTAGCATGTGCACTCTGCTCACTTGTACCGCTTGTGGCCTTGTGGGAGCTAGAGGTGCTTAGACCAATATTACGCTA

Coding sequence (CDS)

ATGGCATACCAAGGAAACAACTACTATGAGCGGGAGGTCATCCGTGACAGCCCATGTGACTCTTACTCTGAGTACAGCAGGGTTGAGGGTGGATATGGAAGGCCTGCAGGCTACCCAATTGGCCACCAGCTACCCCACCACCACAACCACAACAATGTGGTGACTGATGTTGTATATGAGACCAGCACCATTCCTAGGTATGGACACCACCACCACCACCACGGCGGTGCTGAGGTTGTTCAGAGGCAGGAAGAGAGGATTGTTTATGAAAATGATTTCGACCCATGCAGGAGGATGTACTAG

Protein sequence

MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYETSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21410.1Spo21410.1mRNA


Homology
[Close]
BLAST of Spo21410.1 vs. NCBI nr
Match: gi|902221274|gb|KNA18869.1| (hypothetical protein SOVF_066700 [Spinacia oleracea])

HSP 1 Score: 221.9 bits (564), Expect = 5.100e-55
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

		  

Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60
           MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE
Sbjct: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60

Query: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
           TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY
Sbjct: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 100
[Close]
BLAST of Spo21410.1 vs. NCBI nr
Match: gi|731330784|ref|XP_010676317.1| (PREDICTED: uncharacterized protein LOC104892175 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 148.3 bits (373), Expect = 7.200e-33
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1 

		  

Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQ---------------LP 60
           MA+ G+NYYE+EVIR+ PCDSYSEYSRV+GGYGRP+ YPIGH+               +P
Sbjct: 1   MAHCGSNYYEKEVIRERPCDSYSEYSRVDGGYGRPS-YPIGHRHHNNVVSDVVYESSSIP 60

Query: 61  ----HHHN---HNNVVTDVVYETSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRR 100
               HHH+   HNNVVT+VVYE+S IP YG HHHHHGGAE+++R+EERIVYEN++DP RR
Sbjct: 61  SYGHHHHHGGAHNNVVTEVVYESSAIPSYG-HHHHHGGAEIIERKEERIVYENEYDPYRR 119
[Close]
BLAST of Spo21410.1 vs. NCBI nr
Match: gi|31879430|dbj|BAC77693.1| (salt-induced hydrophilic protein [Atriplex nummularia])

HSP 1 Score: 68.2 bits (165), Expect = 9.500e-9
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1 

		  

Query: 5   GNNYYE--REVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNH-NNVVTDVVYET 64
           GNNY E  REVIR++P  +Y    RV+           G+++ HH N   NV+T++V E 
Sbjct: 9   GNNYCEAEREVIREAPYGTYGADYRVD---------EYGNRIHHHRNGLGNVITEIVSE- 68

Query: 65  STIPRYGHHHHHHGG--AEVVQRQEERIVYENDFDPCRRMY 101
             +P + H HHHHGG   E+++R+EERIV +  +DP RR Y
Sbjct: 69  --VPAHHHQHHHHGGIPGEIIERREERIV-DAAYDPYRRTY 96
[Close]
BLAST of Spo21410.1 vs. NCBI nr
Match: gi|902221275|gb|KNA18870.1| (hypothetical protein SOVF_066710 [Spinacia oleracea])

HSP 1 Score: 63.5 bits (153), Expect = 2.300e-7
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 1 

		  

Query: 6   NNYYERE--VIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNN-----VVTDVV 65
           +NYYE E  VIR+ P  SYS   RV+           G+++PHH++H +     VV+++V
Sbjct: 10  SNYYEAETEVIREGPYGSYSAEYRVD---------EYGNRVPHHNHHRHNGVGEVVSEIV 69

Query: 66  YETSTIPRY-GHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
            +  +  R+ G+H+H++G  E+++R+EERIV ++ +DP RR Y
Sbjct: 70  TDVISGGRHHGNHNHYNGPTEIIERREERIV-DSSYDPYRRSY 102
[Close]
BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIV9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066700 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.600e-55
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

		  

Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60
           MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE
Sbjct: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60

Query: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
           TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY
Sbjct: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 100
[Close]
BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CIM6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099080 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.000e-33
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1 

		  

Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQ---------------LP 60
           MA+ G+NYYE+EVIR+ PCDSYSEYSRV+GGYGRP+ YPIGH+               +P
Sbjct: 1   MAHCGSNYYEKEVIRERPCDSYSEYSRVDGGYGRPS-YPIGHRHHNNVVSDVVYESSSIP 60

Query: 61  ----HHHN---HNNVVTDVVYETSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRR 100
               HHH+   HNNVVT+VVYE+S IP YG HHHHHGGAE+++R+EERIVYEN++DP RR
Sbjct: 61  SYGHHHHHGGAHNNVVTEVVYESSAIPSYG-HHHHHGGAEIIERKEERIVYENEYDPYRR 119
[Close]
BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: Q7XZR4_ATRNU (Salt-induced hydrophilic protein OS=Atriplex nummularia GN=AnSIHP1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.600e-9
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1 

		  

Query: 5   GNNYYE--REVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNH-NNVVTDVVYET 64
           GNNY E  REVIR++P  +Y    RV+           G+++ HH N   NV+T++V E 
Sbjct: 9   GNNYCEAEREVIREAPYGTYGADYRVD---------EYGNRIHHHRNGLGNVITEIVSE- 68

Query: 65  STIPRYGHHHHHHGG--AEVVQRQEERIVYENDFDPCRRMY 101
             +P + H HHHHGG   E+++R+EERIV +  +DP RR Y
Sbjct: 69  --VPAHHHQHHHHGGIPGEIIERREERIV-DAAYDPYRRTY 96
[Close]
BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHB3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066710 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.600e-7
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 1 

		  

Query: 6   NNYYERE--VIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNN-----VVTDVV 65
           +NYYE E  VIR+ P  SYS   RV+           G+++PHH++H +     VV+++V
Sbjct: 10  SNYYEAETEVIREGPYGSYSAEYRVD---------EYGNRVPHHNHHRHNGVGEVVSEIV 69

Query: 66  YETSTIPRY-GHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
            +  +  R+ G+H+H++G  E+++R+EERIV ++ +DP RR Y
Sbjct: 70  TDVISGGRHHGNHNHYNGPTEIIERREERIV-DSSYDPYRRSY 102
The following BLAST results are available for this feature:
BLAST of Spo21410.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4
Match NameE-valueIdentityDescription
gi|902221274|gb|KNA18869.1|5.1e-55100.hypothetical protein SOVF_0667... [more]
gi|731330784|ref|XP_010676317.1|7.2e-3361.9PREDICTED: uncharacterized pro... [more]
gi|31879430|dbj|BAC77693.1|9.5e-942.5salt-induced hydrophilic prote... [more]
gi|902221275|gb|KNA18870.1|2.3e-737.8hypothetical protein SOVF_0667... [more]
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BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
A0A0K9RIV9_SPIOL3.6e-55100.Uncharacterized protein OS=Spi... [more]
A0A0J8CIM6_BETVU5.0e-3361.9Uncharacterized protein OS=Bet... [more]
Q7XZR4_ATRNU6.6e-942.5Salt-induced hydrophilic prote... [more]
A0A0K9RHB3_SPIOL1.6e-737.8Uncharacterized protein OS=Spi... [more]
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BLAST of Spo21410.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21410.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0009664 plant-type cell wall organization
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005730 nucleolus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005618 cell wall
cellular_component GO:0005576 extracellular region
cellular_component GO:0016020 membrane
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003713 transcription coactivator activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo081840.74Barchart | Table
Spo214060.72Barchart | Table
Spo179500.66Barchart | Table
Spo219690.66Barchart | Table
Spo219680.65Barchart | Table
Spo247830.65Barchart | Table