Spo21413 (gene) | SpinachBase

Overview


Name	Spo21413
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Salt-induced hydrophilic protein
Location	chr6 : 39041623 .. 39043208 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTAAACACCACTCAATATGGCAATTCCAAATTGATCAAGAAAATGTGATTCTCTCAAACATGCAACATGAAAATATTCCCATTTTCACCACTATTTAAGCATACCATGGACCTTGCTCATTTGCACCTCACTCAATCAATACTTGTAATCCTCCCTAAATTAAGCAAACCAACAACAATTAATGGCATACATCAACCGCCCCTACGGAAAGAACTACTACGAGGTTGAGAGAGAGGTCGTCCGTGACGGTCCATATGGTGCCTACGTCGCTGACTACAGGGTTGACGAATATGGAAACCGCATCTACCACCACCACAATAGGTTGGGAAATTCCATAACTAAGATTGTGACTGATGTCATTCCTGGTCATCACACCTCCCGTAACGGACTCGGAAATGTCGTAACGGGGTTTGTGACCACTGATGTTATCCCCGGCTACCACCACCACCACTACCCTAACATCATTGATAGGACGGTACGTGTTTTTTTTTTATCCTTCTTAATTTGACACGGGTATATTAATGGTTAAATATTACATTGAAGTCTGTGCAAATAGTAAGGGTAAAGAACTTTAAGGAACGAAAAATACTCCTTATTTTGAGTGTCCAAACTAAATTTTCTTAAATCTATCAGCTAACTTGCCCTTTCATGTCTCATTTTTGTACTGCAGAGGTACTGACAGTTGACACTTGCATGAATCATGAACCAGAGAATTGACAGCAAACATGGTATCAGTGTAATAAAATGTCCTCTTTACCCTCTAAAAATAGGCTAGTCATTACGGGCCAGGATTCAACACGATGTGTACTTTGCTATCTTGGAGTAATTTGTTTGGCGATGTATTTCGGATTTTTTTTATGAAGTTATAGTACATGGCTTTTGGTTTTTAGAAAGAAATTATGTCCCGTCTCTAGAATGAAACTGCACTTATGCTAACTCAAACTAGAAAGTGAGTAGAACATTACGAAACAAATATCTCTATTCTCAACTCTCAAGCAATATATAGCTCAAGCTGAGAAATTAGTCTAACTAAAACAATGACCTGCATTACATTTTAACGTGCATCTCAAAAAGCAAGCTAGGTTCTGAAAGCGAAATGTGTTCTTGACACAACAGCAAGAAATAGCAAGTCCCGTCTTTATTGCCAAGTCCAGAGAGAACATAACAAGGAAATCCATGTAGTTTTGCAGTAACTTGGACGTTGACAACAAGACTTTATTGTTACAAAGTCATTATTAATACGGGAGATGATACACATACCCCAGGCATATGTAGGATCCACATACCCTGGTTTTTATTGGTCCAAATTAGCTTAAAGAAATTTCATTTTGGAGGAAAAAATGTTTTATTTAGGAGTGGTACCAATAATAAATCAATCAAAGAATAAGGTATGTAAGAGCCCACATGTAGCCTTTGCGTTACCAAATGGGAGATGATACACATACCTCAAGGGTATGTAGGACCCATATACCCTGGTCTTTTATTGGTCCAAATTAGCTTAAAGAAATTTCATTTTAGAGGAAAAAATATTTTATTTAGGGGTGGTACCAATAATAAACCAATCAAAGATTAAGGTTATTGACGC

mRNA sequence

AGTAAACACCACTCAATATGGCAATTCCAAATTGATCAAGAAAATGTGATTCTCTCAAACATGCAACATGAAAATATTCCCATTTTCACCACTATTTAAGCATACCATGGACCTTGCTCATTTGCACCTCACTCAATCAATACTTGTAATCCTCCCTAAATTAAGCAAACCAACAACAATTAATGGCATACATCAACCGCCCCTACGGAAAGAACTACTACGAGGTTGAGAGAGAGGTCGTCCGTGACGGTCCATATGGTGCCTACGTCGCTGACTACAGGGTTGACGAATATGGAAACCGCATCTACCACCACCACAATAGGTTGGGAAATTCCATAACTAAGATTGTGACTGATGTCATTCCTGGTCATCACACCTCCCGTAACGGACTCGGAAATGTCGTAACGGGGTTTGTGACCACTGATGTTATCCCCGGCTACCACCACCACCACTACCCTAACATCATTGATAGGACGAGGTACTGACAGTTGACACTTGCATGAATCATGAACCAGAGAATTGACAGCAAACATGGTATCAGTGTAATAAAATGTCCTCTTTACCCTCTAAAAATAGGCTAGTCATTACGGGCCAGGATTCAACACGATGTGTACTTTGCTATCTTGGAGTAATTTGTTTGGCGATGTATTTCGGATTTTTTTTATGAAGTTATAGTACATGGCTTTTGGTTTTTAGAAAGAAATTATGTCCCGTCTCTAGAATGAAACTGCACTTATGCTAACTCAAACTAGAAAGTGAGTAGAACATTACGAAACAAATATCTCTATTCTCAACTCTCAAGCAATATATAGCTCAAGCTGAGAAATTAGTCTAACTAAAACAATGACCTGCATTACATTTTAACGTGCATCTCAAAAAGCAAGCTAGGTTCTGAAAGCGAAATGTGTTCTTGACACAACAGCAAGAAATAGCAAGTCCCGTCTTTATTGCCAAGTCCAGAGAGAACATAACAAGGAAATCCATGTAGTTTTGCAGTAACTTGGACGTTGACAACAAGACTTTATTGTTACAAAGTCATTATTAATACGGGAGATGATACACATACCCCAGGCATATGTAGGATCCACATACCCTGGTTTTTATTGGTCCAAATTAGCTTAAAGAAATTTCATTTTGGAGGAAAAAATGTTTTATTTAGGAGTGGTACCAATAATAAATCAATCAAAGAATAAGGTATGTAAGAGCCCACATGTAGCCTTTGCGTTACCAAATGGGAGATGATACACATACCTCAAGGGTATGTAGGACCCATATACCCTGGTCTTTTATTGGTCCAAATTAGCTTAAAGAAATTTCATTTTAGAGGAAAAAATATTTTATTTAGGGGTGGTACCAATAATAAACCAATCAAAGATTAAGGTTATTGACGC

Coding sequence (CDS)

ATGGCATACATCAACCGCCCCTACGGAAAGAACTACTACGAGGTTGAGAGAGAGGTCGTCCGTGACGGTCCATATGGTGCCTACGTCGCTGACTACAGGGTTGACGAATATGGAAACCGCATCTACCACCACCACAATAGGTTGGGAAATTCCATAACTAAGATTGTGACTGATGTCATTCCTGGTCATCACACCTCCCGTAACGGACTCGGAAATGTCGTAACGGGGTTTGTGACCACTGATGTTATCCCCGGCTACCACCACCACCACTACCCTAACATCATTGATAGGACGAGGTACTGA

Protein sequence

MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVIPGHHTSRNGLGNVVTGFVTTDVIPGYHHHHYPNIIDRTRY

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21413.1	Spo21413.1	mRNA

Homology

[Close]

BLAST of Spo21413.1 vs. NCBI nr
Match: gi|902221279|gb|KNA18874.1| (hypothetical protein SOVF_066750 [Spinacia oleracea])

HSP 1 Score: 218.8 bits (556), Expect = 4.400e-54
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60
           MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI
Sbjct: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60

Query: 61  PGHHTSRNGLGNVVTGFVTTDVIPGYHHHHYPNIIDRTRY 101
           PGHHTSRNGLGNVVTGFVTTDVIPGYHHHHYPNIIDRTRY
Sbjct: 61  PGHHTSRNGLGNVVTGFVTTDVIPGYHHHHYPNIIDRTRY 100

[Close]

BLAST of Spo21413.1 vs. NCBI nr
Match: gi|902221276|gb|KNA18871.1| (hypothetical protein SOVF_066720 [Spinacia oleracea])

HSP 1 Score: 144.4 bits (363), Expect = 1.000e-31
Identity = 74/104 (71.15%), Postives = 80/104 (76.92%), Query Frame = 1

		  
Query: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60
           MAY N PYG NYY VEREV+RDGP GAY ADYRVDEYGNRIYHH N LGN +T+IVTDVI
Sbjct: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60

Query: 61  PG-----HHTSRNGLGNVVTGFVTTDVIPGYHHH--HYPNIIDR 98
           PG     HH  RNGLGNVVT  V TDVIPG++HH  H+P  I R
Sbjct: 61  PGHLNHHHHHPRNGLGNVVTE-VVTDVIPGHYHHQRHHPGFIQR 102

[Close]

BLAST of Spo21413.1 vs. NCBI nr
Match: gi|902221281|gb|KNA18876.1| (hypothetical protein SOVF_066770 [Spinacia oleracea])

HSP 1 Score: 116.7 bits (291), Expect = 2.300e-23
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1

		  
Query: 1  MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHN-RLGNSITKIVTDV 60
          M ++NRPYG +YYEVER VVRDGPYG   ADYR+DEYGNR+Y+  N  LGNS+T+IVTD+
Sbjct: 1  MTFVNRPYGNDYYEVERVVVRDGPYG---ADYRIDEYGNRVYYRRNDGLGNSVTEIVTDI 60

Query: 61 IPGHHTSRNGLGNVVTGFVTTDVIPGYH 88
          IPG H S +  GN VT  V TD+IPG H
Sbjct: 61 IPGTHASHDAFGNSVTEIV-TDIIPGRH 84

[Close]

BLAST of Spo21413.1 vs. NCBI nr
Match: gi|902221277|gb|KNA18872.1| (hypothetical protein SOVF_066730 [Spinacia oleracea])

HSP 1 Score: 110.5 bits (275), Expect = 1.700e-21
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1

		  
Query: 8  YGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVIPGHHTSR 67
          YG +YYEVER VVRDGPYGA   DYR+DEYGNR+Y+  + LGNS+T+IVTDVIPG H S 
Sbjct: 3  YGNDYYEVERVVVRDGPYGA---DYRIDEYGNRVYYRRDGLGNSVTEIVTDVIPGTHASP 62

Query: 68 NGLGNVVTGFVTTDVIPGYH 88
          +  GN VTG V TD+IPG H
Sbjct: 63 DAFGNSVTGIV-TDIIPGRH 78

[Close]

BLAST of Spo21413.1 vs. NCBI nr
Match: gi|731330786|ref|XP_010676318.1| (PREDICTED: uncharacterized protein LOC104892176 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 107.1 bits (266), Expect = 1.800e-20
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1

		  
Query: 1  MAYINRPYGKNYYEVEREVVRDGPYGAYV--ADYRVDEYGNRIYHHHNRLGNSITKIVTD 60
          MAYINRPYG NYYEVE+EVVR+GPYG+    A+YR+DEYGNR++HH N LGN +T++V++
Sbjct: 1  MAYINRPYGNNYYEVEKEVVREGPYGSAYGSAEYRIDEYGNRVHHHRNGLGNVVTEVVSE 60

Query: 61 VIPGHH 65
          VIPGHH
Sbjct: 61 VIPGHH 66

[Close]

BLAST of Spo21413.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIW4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066750 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.000e-54
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60
           MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI
Sbjct: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60

Query: 61  PGHHTSRNGLGNVVTGFVTTDVIPGYHHHHYPNIIDRTRY 101
           PGHHTSRNGLGNVVTGFVTTDVIPGYHHHHYPNIIDRTRY
Sbjct: 61  PGHHTSRNGLGNVVTGFVTTDVIPGYHHHHYPNIIDRTRY 100

[Close]

BLAST of Spo21413.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH83_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066720 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.300e-32
Identity = 74/104 (71.15%), Postives = 80/104 (76.92%), Query Frame = 1

		  
Query: 1   MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVI 60
           MAY N PYG NYY VEREV+RDGP GAY ADYRVDEYGNRIYHH N LGN +T+IVTDVI
Sbjct: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60

Query: 61  PG-----HHTSRNGLGNVVTGFVTTDVIPGYHHH--HYPNIIDR 98
           PG     HH  RNGLGNVVT  V TDVIPG++HH  H+P  I R
Sbjct: 61  PGHLNHHHHHPRNGLGNVVTE-VVTDVIPGHYHHQRHHPGFIQR 102

[Close]

BLAST of Spo21413.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH90_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066770 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.600e-23
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1

		  
Query: 1  MAYINRPYGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHN-RLGNSITKIVTDV 60
          M ++NRPYG +YYEVER VVRDGPYG   ADYR+DEYGNR+Y+  N  LGNS+T+IVTD+
Sbjct: 1  MTFVNRPYGNDYYEVERVVVRDGPYG---ADYRIDEYGNRVYYRRNDGLGNSVTEIVTDI 60

Query: 61 IPGHHTSRNGLGNVVTGFVTTDVIPGYH 88
          IPG H S +  GN VT  V TD+IPG H
Sbjct: 61 IPGTHASHDAFGNSVTEIV-TDIIPGRH 84

[Close]

BLAST of Spo21413.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJ35_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066730 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.200e-21
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = 1

		  
Query: 8  YGKNYYEVEREVVRDGPYGAYVADYRVDEYGNRIYHHHNRLGNSITKIVTDVIPGHHTSR 67
          YG +YYEVER VVRDGPYGA   DYR+DEYGNR+Y+  + LGNS+T+IVTDVIPG H S 
Sbjct: 3  YGNDYYEVERVVVRDGPYGA---DYRIDEYGNRVYYRRDGLGNSVTEIVTDVIPGTHASP 62

Query: 68 NGLGNVVTGFVTTDVIPGYH 88
          +  GN VTG V TD+IPG H
Sbjct: 63 DAFGNSVTGIV-TDIIPGRH 78

[Close]

BLAST of Spo21413.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F7N2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099100 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.300e-20
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1

		  
Query: 1  MAYINRPYGKNYYEVEREVVRDGPYGAYV--ADYRVDEYGNRIYHHHNRLGNSITKIVTD 60
          MAYINRPYG NYYEVE+EVVR+GPYG+    A+YR+DEYGNR++HH N LGN +T++V++
Sbjct: 1  MAYINRPYGNNYYEVEKEVVREGPYGSAYGSAEYRIDEYGNRVHHHRNGLGNVVTEVVSE 60

Query: 61 VIPGHH 65
          VIPGHH
Sbjct: 61 VIPGHH 66

The following BLAST results are available for this feature:

BLAST of Spo21413.1 vs. NCBI nr
BLAST of Spo21413.1 vs. UniProtKB/TrEMBL
BLAST of Spo21413.1 vs. ExPASy Swiss-Prot
BLAST of Spo21413.1 vs. TAIR (Arabidopsis)

BLAST of Spo21413.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902221279\|gb\|KNA18874.1\|	4.4e-54	100.	hypothetical protein SOVF_0667...	[more]
gi\|902221276\|gb\|KNA18871.1\|	1.0e-31	71.1	hypothetical protein SOVF_0667...	[more]
gi\|902221281\|gb\|KNA18876.1\|	2.3e-23	64.7	hypothetical protein SOVF_0667...	[more]
gi\|902221277\|gb\|KNA18872.1\|	1.7e-21	67.5	hypothetical protein SOVF_0667...	[more]
gi\|731330786\|ref\|XP_010676318.1\|	1.8e-20	69.7	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo21413.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RIW4_SPIOL	3.0e-54	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RH83_SPIOL	7.3e-32	71.1	Uncharacterized protein OS=Spi...	[more]
A0A0K9RH90_SPIOL	1.6e-23	64.7	Uncharacterized protein OS=Spi...	[more]
A0A0K9RJ35_SPIOL	1.2e-21	67.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8F7N2_BETVU	1.3e-20	69.7	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo21413.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21413.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21414	0.71	Barchart \| Table