Spo21487 (gene)

Overview
NameSpo21487
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionINO80 complex subunit C
LocationSpoScf_01272 : 88694 .. 90855 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAAGTTAAAGAAGTGTCTAGAATGAATGAGTAAAATGAACTAGAAACGCCATGGTTGGTGAGAACTGAGAAGGAAGCAAGAAAGCAAGAATGGAGAGAGAAGTAGTGGAGTCAGAGTTAGTATTGCCGACTCACTTGAATTTCAAGAAACTTCAAATGTATGAGAAATACCCAAAGGGTCAACCCAGAAGCAGACACTGGAAACATCTCAAGCAGATTCTTCAAGCTGATAATTTCCAGAATTACCCTCCTGATGAACCCAATTGTGAGTTCATTTCTCATTCTCAATTTATTTTCTGTTTTTCTTTAGTGATTGTCTCTTTGGGTTTTGTAATTTCTTTGGAATTACATATGGTTGTGTTTATAATTCTGATGGGTTTGGGAATTGGGAGTTTCTGTTTGAAAATTTTGATATCTCGACCTTGATAATCGTTTCTTTGGGGTATGATGTAAACGAGATTCAATTTGATCCGAGGGTACTCGTACCTTCAAGAATTTGTCAATTTGATAAGCTGCAATTCATATTGTGAATGGACAAATAATGGTGAAAACATGTTTGTTAGGTTATGTATTAGATTAATCGAAAGAATTGGGTATTTCTATATCTGAGAAATTCAATTGTTTTTGATGTTTGTTTTCACAGATGTGAATATTGAGGCACCACCTTCAATGCATCCACCCAAGAGAGTTTGTGATATTACAGGATATGAGGTGAGCTGAGCTCCTTTTAAATTTTATAAAGCAATTGGTAATGTCAATAATTGAATTATCATCTTCTTAACAATCCGAAATCGTAATACTGATTGTGGCAGAGGGATTCACTGCTTCTGTAAAGGCATTTTTAAGTGCTGGAGTATCATTTCCTTTTGCTTACTATGGTTGTCTTTTAGGTTTAGTACTCCATATTTGGGATTAGTGTAATTTGTGTTTATCTTTAAAAAGATATAACGTTGATCTTTGTTCAGGCGAAGTCCTTAATTTCTTTAGCTTCCATATTTGTCTATTTCCTTGTGTCTATAAATGGGCGAGGAGTATGATGTTGGTTTTGATACAGAAATTTGAGATTATAATCTTGTAAGTTAGCGATGATAGAGATTTGTATTGCTGATATTCTTCAGTTAAATCAAGTCTCTGGGTTTCTTTTTCCGATTATTCAAGGACAAAAAAAAATCTTATGCTTACAGATTGCAATGGTAGTAGCTTCACGTTTGCTACATTTGAAAATCACTTCTGAATGCATCTCTTGTTTCTAGGTCTCTTCCTATAGTACTTCTCTTCATATTACTTTGGTGCCATGAGCCGTGCTTGATCCTTGACACTCCGGCTTGGGGGTCGACACTTTTGACAACTTTTTGGATTAGCTAATTTACATACAGAATAAAATACTACACTTGGGATATTTACCTTACCGGTGTCTTATTGAGTTCCTGAATTCTAGTAACTTAGGTTTTATGTGACGTTGTATTGATAGTTTGATTATTCGATACTCTTGATGGTTGTGATTGTGAGATTTTCTAGCCAATCCTAATCATTGTGATACATAATAACAAGACGGGATTTACTAGTTTGATTAGTTGATCGAGTTGTCATTGTGATACATACACATTGCTTTGTTCACTTGCCTGGCTGCTTTTCTGAAGATATCAAATTAATATCTACAATTTTGTGCAAAAAATGAGTTGGTTGCCCATAGATTGAATTTTCTGATGCAGGCACCCTATCATGATCCGAGGACCAACTTGCGTTATGCCAATGCTGAAGTCTATAAGCTGATCAGGTCACTTCCTAATGAATATGTGCAACGGTATCTGTCTCTTAGAAATGCTGCAGTTGTTCTCAAGTAGAGTATTGCTTCCCTTTTAACAGCCGTTTGTTCAGTTGATGAAGAAGATACAGTTTCACCGAAGAAACTTTCCCTTTTTTCATCACCAAGTCTCGCAGTTTGCAGTCTGAGGGCCGTGTATATACTACTGCATCACTGCAAGTATTCGTTGGTTGGGGCGTAGAATGTACAGTTTGTGGAATTATGGGTTGCTATGATATTGTAGTTTTAGAGGTTGAAATCATCTTTTGTGAAACAAATACTCTTTTCTTATGACTTTCCCCCTTTATTTTCCCCTTCATCGTAATTCAACTTACCTTTGCTATTTCATCTCGAA

mRNA sequence

AAAACAAGTTAAAGAAGTGTCTAGAATGAATGAGTAAAATGAACTAGAAACGCCATGGTTGGTGAGAACTGAGAAGGAAGCAAGAAAGCAAGAATGGAGAGAGAAGTAGTGGAGTCAGAGTTAGTATTGCCGACTCACTTGAATTTCAAGAAACTTCAAATGTATGAGAAATACCCAAAGGGTCAACCCAGAAGCAGACACTGGAAACATCTCAAGCAGATTCTTCAAGCTGATAATTTCCAGAATTACCCTCCTGATGAACCCAATTATGTGAATATTGAGGCACCACCTTCAATGCATCCACCCAAGAGAGTTTGTGATATTACAGGATATGAGGCACCCTATCATGATCCGAGGACCAACTTGCGTTATGCCAATGCTGAAGTCTATAAGCTGATCAGGTCACTTCCTAATGAATATGTGCAACGGTATCTGTCTCTTAGAAATGCTGCAGTTGTTCTCAAGTAGAGTATTGCTTCCCTTTTAACAGCCGTTTGTTCAGTTGATGAAGAAGATACAGTTTCACCGAAGAAACTTTCCCTTTTTTCATCACCAAGTCTCGCAGTTTGCAGTCTGAGGGCCGTGTATATACTACTGCATCACTGCAAGTATTCGTTGGTTGGGGCGTAGAATGTACAGTTTGTGGAATTATGGGTTGCTATGATATTGTAGTTTTAGAGGTTGAAATCATCTTTTGTGAAACAAATACTCTTTTCTTATGACTTTCCCCCTTTATTTTCCCCTTCATCGTAATTCAACTTACCTTTGCTATTTCATCTCGAA

Coding sequence (CDS)

ATGGAGAGAGAAGTAGTGGAGTCAGAGTTAGTATTGCCGACTCACTTGAATTTCAAGAAACTTCAAATGTATGAGAAATACCCAAAGGGTCAACCCAGAAGCAGACACTGGAAACATCTCAAGCAGATTCTTCAAGCTGATAATTTCCAGAATTACCCTCCTGATGAACCCAATTATGTGAATATTGAGGCACCACCTTCAATGCATCCACCCAAGAGAGTTTGTGATATTACAGGATATGAGGCACCCTATCATGATCCGAGGACCAACTTGCGTTATGCCAATGCTGAAGTCTATAAGCTGATCAGGTCACTTCCTAATGAATATGTGCAACGGTATCTGTCTCTTAGAAATGCTGCAGTTGTTCTCAAGTAG

Protein sequence

MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAAVVLK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21487.1Spo21487.1mRNA


Homology
[Close]
BLAST of Spo21487.1 vs. NCBI nr
Match: gi|902210570|gb|KNA16481.1| (hypothetical protein SOVF_088880 [Spinacia oleracea])

HSP 1 Score: 259.2 bits (661), Expect = 3.600e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV
Sbjct: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124
[Close]
BLAST of Spo21487.1 vs. NCBI nr
Match: gi|731357649|ref|XP_010690324.1| (PREDICTED: INO80 complex subunit C [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 234.6 bits (597), Expect = 9.500e-59
Identity = 107/124 (86.29%), Postives = 120/124 (96.77%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MEREV+E+ELVLPTHLNFKK+QMYEKYPKGQ R RHWKHLKQILQA+N+QNYP DEPNYV
Sbjct: 1   MEREVIEAELVLPTHLNFKKIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPLDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHPPKR+CDITGYEAPY+DPRT +RYANAEV+KL+RSLPN+YVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPPKRICDITGYEAPYYDPRTTMRYANAEVFKLVRSLPNDYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124
[Close]
BLAST of Spo21487.1 vs. NCBI nr
Match: gi|567859782|ref|XP_006422545.1| (hypothetical protein CICLE_v10029589mg [Citrus clementina])

HSP 1 Score: 228.8 bits (582), Expect = 5.200e-57
Identity = 104/124 (83.87%), Postives = 120/124 (96.77%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EV+E+ELVLPT+++FK++QMYEKYPKGQ R RHWKHLKQILQA+N+QNYPPDEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPY+DPRTNLRYANAEV+KL+RSLPNEYVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124
[Close]
BLAST of Spo21487.1 vs. NCBI nr
Match: gi|734378377|gb|KHN22062.1| (INO80 complex subunit C [Glycine soja])

HSP 1 Score: 228.8 bits (582), Expect = 5.200e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 1   MEAEVVEAELVLPSYLSFKRIQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           +VLK
Sbjct: 121 IVLK 124
[Close]
BLAST of Spo21487.1 vs. NCBI nr
Match: gi|955395006|ref|XP_006591029.2| (PREDICTED: chromatin-remodeling complex subunit ies6 isoform X1 [Glycine max])

HSP 1 Score: 228.4 bits (581), Expect = 6.800e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 7   MEAEVVEAELVLPSYLSFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 66

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 67  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 126

Query: 121 VVLK 125
           +VLK
Sbjct: 127 IVLK 130
[Close]
BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAF3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088880 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.500e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV
Sbjct: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124
[Close]
BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QQT5_GLYSO (INO80 complex subunit C OS=Glycine soja GN=glysoja_008974 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.600e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 1   MEAEVVEAELVLPSYLSFKRIQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           +VLK
Sbjct: 121 IVLK 124
[Close]
BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: V4SAC9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029589mg PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.600e-57
Identity = 104/124 (83.87%), Postives = 120/124 (96.77%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EV+E+ELVLPT+++FK++QMYEKYPKGQ R RHWKHLKQILQA+N+QNYPPDEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPY+DPRTNLRYANAEV+KL+RSLPNEYVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124
[Close]
BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: A0A067FL65_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033229mg PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.600e-57
Identity = 104/124 (83.87%), Postives = 120/124 (96.77%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EV+E+ELVLPT+++FK++QMYEKYPKGQ R RHWKHLKQILQA+N+QNYPPDEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPY+DPRTNLRYANAEV+KL+RSLPNEYVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124
[Close]
BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: I1LKE8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_U018800 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.800e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 28  MEAEVVEAELVLPSYLSFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 87

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 88  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 147

Query: 121 VVLK 125
           +VLK
Sbjct: 148 IVLK 151
[Close]
BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IES6_SCHPO (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ies6 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1 

		  

Query: 29  KGQPRSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPR 88
           K QPR    ++L+QI+Q D  QN  P + +Y +IEAPPS+ P  + CD+TG  A Y DP+
Sbjct: 25  KAQPRRN--RNLRQIIQNDPVQN-EPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPK 84

Query: 89  TNLRYANAEVYKLIRSLPNEYVQRYLSLRNAAVVLK 125
           T LRY N E+Y LIR LP+   Q YL LR++ VVLK
Sbjct: 85  TRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVLK 117
[Close]
BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IN80C_MOUSE (INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.400e-15
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 1 

		  

Query: 33  RSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLR 92
           ++R WK+LKQIL A+    +  ++PNY +I+APPS  P K+  DI+G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDISGLLANYTDPQSKLR 159

Query: 93  YANAEVYKLIRSLPNEYVQRYLSLRNAAVVL 124
           ++  E +  IR LP++ V  YL+LR A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLALRKATSIV 190
[Close]
BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IN80C_RAT (INO80 complex subunit C OS=Rattus norvegicus GN=Ino80c PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.100e-14
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 1 

		  

Query: 33  RSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLR 92
           ++R WK+LKQIL A+    +  ++PNY +I+APPS  P K+  D++G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 159

Query: 93  YANAEVYKLIRSLPNEYVQRYLSLRNAAVVL 124
           ++  E +  IR LP++ V  YL+LR A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLTLRKATSIV 190
[Close]
BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IN80C_HUMAN (INO80 complex subunit C OS=Homo sapiens GN=INO80C PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.200e-14
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 1 

		  

Query: 33  RSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLR 92
           ++R WK+LKQIL ++    +  ++PNY +I+APPS  P K+  D++G  A Y DP++ LR
Sbjct: 101 KNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 160

Query: 93  YANAEVYKLIRSLPNEYVQRYLSLRNAAVVL 124
           ++  E +  IR LP++ V  YL+LR A  ++
Sbjct: 161 FSTIEEFSYIRRLPSDVVTGYLALRKATSIV 191
[Close]
BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IES6_YEAST (Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IES6 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.800e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1 

		  

Query: 59  YVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLI-RSLPNEYVQRYLSLR 118
           Y ++EAPPS+ P K+ CD+TG +  Y  P  N+RY NAE+Y+LI + +     Q YL LR
Sbjct: 100 YFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKLR 159

Query: 119 NAAVVLK 125
            A  VLK
Sbjct: 160 GANFVLK 166
[Close]
BLAST of Spo21487.1 vs. TAIR (Arabidopsis)
Match: AT4G38495.1 (YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 176.8 bits (447), Expect = 8.300e-45
Identity = 84/124 (67.74%), Postives = 103/124 (83.06%), Query Frame = 1 

		  

Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MERE++E+++V+ + L+FKK Q YEKYPK Q  SR WKHLKQILQA+NF + PPD P YV
Sbjct: 1   MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLPTYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPS  P KR+CDITGYEAPY DPRTNLRYANA V++ +RSL ++ V +YLS+RNAA
Sbjct: 61  NIESPPSTQPCKRLCDITGYEAPYVDPRTNLRYANAHVFQTVRSLSSDQVHQYLSIRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124
The following BLAST results are available for this feature:
BLAST of Spo21487.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902210570|gb|KNA16481.1|3.6e-66100.hypothetical protein SOVF_0888... [more]
gi|731357649|ref|XP_010690324.1|9.5e-5986.2PREDICTED: INO80 complex subun... [more]
gi|567859782|ref|XP_006422545.1|5.2e-5783.8hypothetical protein CICLE_v10... [more]
gi|734378377|gb|KHN22062.1|5.2e-5783.8INO80 complex subunit C [Glyci... [more]
gi|955395006|ref|XP_006591029.2|6.8e-5783.8PREDICTED: chromatin-remodelin... [more]
back to top
BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RAF3_SPIOL2.5e-66100.Uncharacterized protein OS=Spi... [more]
A0A0B2QQT5_GLYSO3.6e-5783.8INO80 complex subunit C OS=Gly... [more]
V4SAC9_9ROSI3.6e-5783.8Uncharacterized protein OS=Cit... [more]
A0A067FL65_CITSI3.6e-5783.8Uncharacterized protein OS=Cit... [more]
I1LKE8_SOYBN4.8e-5783.8Uncharacterized protein OS=Gly... [more]
back to top
BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IES6_SCHPO1.2e-1651.0Chromatin-remodeling complex s... [more]
IN80C_MOUSE8.4e-1542.8INO80 complex subunit C OS=Mus... [more]
IN80C_RAT1.1e-1441.7INO80 complex subunit C OS=Rat... [more]
IN80C_HUMAN3.2e-1440.6INO80 complex subunit C OS=Hom... [more]
IES6_YEAST4.8e-1047.7Chromatin-remodeling complex s... [more]
back to top
BLAST of Spo21487.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G38495.18.3e-4567.7YL1 nuclear, C-terminal (Inter... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013272Vps72/YL1, C-terminalPFAMPF08265YL1_Ccoord: 74..102
score: 4.5
IPR013272Vps72/YL1, C-terminalSMARTSM00993YL1_C_2coord: 73..102
score: 3.3
NoneNo IPR availablePANTHERPTHR31200FAMILY NOT NAMEDcoord: 1..124
score: 1.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
biological_process GO:0048608 reproductive structure development
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0009644 response to high light intensity
biological_process GO:0009860 pollen tube growth
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0034605 cellular response to heat
biological_process GO:0009688 abscisic acid biosynthetic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009396 folic acid-containing compound biosynthetic process
biological_process GO:0010100 negative regulation of photomorphogenesis
biological_process GO:0006281 DNA repair
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0050789 regulation of biological process
biological_process GO:0048856 anatomical structure development
biological_process GO:0051013 microtubule severing
biological_process GO:0043648 dicarboxylic acid metabolic process
biological_process GO:0006334 nucleosome assembly
biological_process GO:0010286 heat acclimation
biological_process GO:0044237 cellular metabolic process
biological_process GO:0044070 regulation of anion transport
biological_process GO:0034220 ion transmembrane transport
biological_process GO:0006821 chloride transport
biological_process GO:0019852 L-ascorbic acid metabolic process
biological_process GO:0006040 amino sugar metabolic process
biological_process GO:0048731 system development
biological_process GO:0071705 nitrogen compound transport
biological_process GO:0042545 cell wall modification
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0008152 metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0015969 guanosine tetraphosphate metabolic process
biological_process GO:0006457 protein folding
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0009414 response to water deprivation
biological_process GO:0006580 ethanolamine metabolic process
biological_process GO:0000422 autophagy of mitochondrion
biological_process GO:0016049 cell growth
biological_process GO:0000902 cell morphogenesis
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0009651 response to salt stress
biological_process GO:0030001 metal ion transport
biological_process GO:0006468 protein phosphorylation
biological_process GO:0010260 animal organ senescence
biological_process GO:0000045 autophagosome assembly
cellular_component GO:0009507 chloroplast
cellular_component GO:0005788 endoplasmic reticulum lumen
cellular_component GO:0016020 membrane
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005634 nucleus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005618 cell wall
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005622 intracellular
cellular_component GO:0000153 cytoplasmic ubiquitin ligase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0048046 apoplast
cellular_component GO:0045298 tubulin complex
cellular_component GO:0008352 katanin complex
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016602 CCAAT-binding factor complex
cellular_component GO:0031011 Ino80 complex
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0008422 beta-glucosidase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005488 binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0003885 D-arabinono-1,4-lactone oxidase activity
molecular_function GO:0050105 L-gulonolactone oxidase activity
molecular_function GO:0008762 UDP-N-acetylmuramate dehydrogenase activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0016831 carboxy-lyase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0019776 Atg8 ligase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0043531 ADP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0016833 oxo-acid-lyase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004857 enzyme inhibitor activity
molecular_function GO:0008728 GTP diphosphokinase activity
molecular_function GO:0030599 pectinesterase activity
molecular_function GO:0005247 voltage-gated chloride channel activity
RNA-Seq Expression