Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTCCACACAATTGATTTCCACCGTGCTGACGATTGACGACTGTGACGAGTGGTGGGTGGGAAACTGTTATGCTCTTTTCAATTTATTTCTTTCCCTTTTTCCACAATAACACCAAAATTAATAAATTCTTTGCAATAAAAAAAGTATGAGGAATAAAATTAAGAAGAAAAGAGAGTCAAAATGTTAGAGGAAATGCCTGGATCGTTGGGCACAAGCGCAAGCTTAGCTCTTCGATTGGGTCAGACTTTGTTTTCATCCGCTTCCCTTTTCTTCATGTGCCTTGATGTTAATTTCTATGGCTACACTGCTTTCTGGTATGTTTTTTATTACTTCACTTTGTTGATTTTATCATGTTTTTTTTTTTTTTTTTTTTTTGCAATTGGGATTTTGTCAGTATGCATGTGGTTTGCAATTGGGATTCTCTGGGGGTTTTTTCATTTAATTTAATTGAGTTGTGATTAAAGTTTTGATTTTGGTTTGGGGGAAGGGTGGAATTGTTTAGTTAGAGAAGATATTAGTGAGATAATTAGGGGTTTGGACTTTAATTAGAGAGAATTGGGTGATGACATGAACCATGTTGAGGGGCTTGGACCCAGCAATTGGGTGATGGTATGAACCATGTTGAGAAGTTTGGACCTTGATTAGGGAATTGGTTGATGGCATGAACCATGGTTGAGGGGTTTGGACCTGAGAATTGGGTAATGGCATGAACCATGATGAGGGGTTTGGACCTTGATTAGGGAATTGGTTGATGGCATGAACCATGGTTGAGGGGTTTGGACCTGAGAATTGGGTGATGGCATGAACCATGATGAGGGGTTTGGACCTTAATTAGAGAATTGGGTGATGGCATGAACCATGGTCGAGGGGTTTGGACCTGAGAATTGGGTGATGGCATGAACAATGGTCGAGGGGTTTGGACCTTAATTGGAGAATTGGTTGATGGAATGAACCATGGTCGAGGGGTTTGGACCTGAGAATTGGGTGATGGCATGAACCATGGTTGAGGGGTTTGGACCTTAATTAGAGAATTAGTTGATGGCATGAAACATGGTCGAGGGGTTTGGACTTGAGAATTGGGTGATGGTATGAACCATGTTGAGGAGTTTGGACCTTAATTAGAGAATTAGTTGATGGCATGAAACATGGTCGAGGGGTTTGGACTTGAGAATTGGGTGATGGTATGAACCATGTTGAGGAGTTTGGACCTTAATTAGAGAATTGGTTGATGGCATGAACCATGGTCGAGGGGTTTGGACCTGAGAATTTGGTGATGGCATGGACCATGTCGAGGGGTTTGGACCTTGATTAGAGAATTGGATGATGGCGTGAACCATAAAGGGTCCTTAATTAGAGAATTGGGTGATGGCATAAACCATGTCGAGGGGTTTGGTTCTTAGAGAATTGGGTGATGGCATAAACCATGTGACCATGTCGAGGGGTTTGGTCCTTAATTTAGAGAATTGGGTGATGGCATGAACCATGTTGAGGAGTTTGGTCCTTAATTAGATAATTGGGTGATGGCATAAACCATGTGACCATGTCGAGGGGTTTGGTCCGGAATTAATGAATTAGGTGATGCCATGAACCATGTCGAAGGGTTTGGTCCTTAATTAATGAATTAAGTGATGCCATGAACCATTTCGAAGGGTTTGATCCTTCATTAATGAATTAGGTAATGCCATGAACCATGTTGAAGGGTTTGGTCCTTAATTAATGAATTAAGTGATGCCATGAACCATGTCGAAGGGTTTGATCCTTCATTAATGAATTAGGTAATGTCATGAACCATGTTGAAGGGTTTGATACTTCATTAATGAATTAGGTAATGCCATGAACCACGTCGAGGGATTTGGTCCTTAATTAGAGAATTGGGTGATGGCACGAACCATGTCGGAGGGGTTTTGGTCCTTAATTAGGTGGTTAATTGATGTATTGAACTATTGATCAACTTTTTGATCATTCACATGCTGATACTGTCGGCTGTTGATTGATGTTTGTTATTGCGTTTGAGGTCAAATGTTACTGAGAGTAATCTTCCAGAGAAATTAGGGGTATATGGTGACAAGTACGTTAAAAACTGTAACTCACTGTACAAATCTCCAGCATAGTCCTTCAGCCTAGTGCATCCTTTCCCTTTGGCCGAACAGGCTGAACTTGATTCTCATGGTGAGCCTACTGGTTCTAGTGTACTAGACACCAATAGATGACTTGATTCTTCTACTTTACTAAGAATCAACGAAATTTGAATGAATTTGTTGTTATTACTGAACACCAGCTCAAGAAGCAACTTGATTCTTCTGCTTTATTAAGCATGAATTTGAATGAACTTTGTTCTTGTAATTGAACGTACACAAGATCAAGAAGAAACTATTATTAGTAGTCCAGTTATCTACTGGAGAGTTGGAGGCAGTCTGACTACTATTTGTGGGTAAATGAAGTAGGATTAAGAAGAGGATTTCTTTTGTCAAAAAAATATTTAAGAACAGTAATCAAGGAAAAAACAAGCTTATACATTTACGTCAAACTCGTTGCTTAGAACATACCCTGGTTGCTTGTATCTCCAGCTAAGAAATATCCCACAGAACGGCTTATTATTTTTCATTTTACATTGTAATATCTGTGTTTTGGTTACTTATAATGTTCGAGAATTTTCACGGGGATGTTAATTAAAAGAGATGAAGATAAAAATACAAGATAATATGACTTTAATGTTCCAACCATTATCATCAAAAGACAGCATCGTTGTCTTTTGTATTCTTGCTATGACTCTGAAGCTTATCATATTTGGAATTCAGTATACTGTCGGGATCAATTTCTAAGACTTGAACTTATATTTACCAAGAAACCATTTCCATGTAATCTTGAAAATGCATGATAATATATTTCTTCCTTATGTTTGTGCAGCTTCTTAGTAACGGTAATGGGTTTGGTGATTCCATGGAGTTTGACATTGGGACTAGTTGATGGCTATTCCGTCTTTGTTAAACGCCCTACACGTCAACCCGGAGTAATGACCGTTATTGTTGTAGGAGATTGGGTACTTTCATCTACACTATCCCGATTAATTTATGATTCTTGAATCTTATGTTGCAATTGTGTTAATGGTATAGCTGATCAAAAGACGGGCTGGGACGGGTTCAAACCGGGTCGCGACATAAAAAATCAACCCATTATGTTGGGCCAGGCCAAGATACGGGAGTTTTTTGTGCCCTTACCCGTTAATTTGGGCCTAAAAATGCGGGGCTTTCCGGTCGGTTCAAATTTATAACTAAAAGTGTAGTTACATTGCCCCAAAGCCCGTCTAAATTTTACAATTTTGGACCGGGTCAGGCCCGAAAAATGGGCCTAAAAAATCTGTCCAAATCCGCAAATTTTCGGACTGAACTCATGTTGATCAGGTCTTGTTGGCACTTGGCAGACATTTTAATTTCTTCTAGAGGTGGTCAAAATTCGTGCCGGGCTTTAACACAAAAACTCATGCCCAAACCCGCAATTTTGGTGCGGGCTTTTTGGGCTGAAACGGGTTTTGGGGCTGAGTTCGGGCTTTGATCTAAAGATGCGTATTTGAGGTTGCCCAAACCTGTACTTTTTCGGGTCGGGCCGTAGATGATCAGGTCTAATTTCTTTCTTCCTTGTGCATTTACAGGTTTTGTCATTCCTTTCACTAGGAGCCGCTTGCTCAACCGCAAGCGTTGCACAAGTCATGATGGCGGAAATGGTTCCGCCATGCCCGGTGAAGATCTGCAGTAGATATTCTATTTCGGCTGCCATGGCTTTCTTGTCTTGGTTTCTGTCTTTTGCTTCTTCTCTCTTTAACTTGTGGATCCTTCCTAAATTATAGCTGGTTTTGTATACATATTCCTTATAGTAGATTTGCCTGGTTATATGGATAGTGAAAAAATGTTTAAAATAGGAGAGAAAAAAATAGAAGTTGGCTGCCAAAAGAAACAATGGTATTGGATGCATCACATGATTATGTCTTATATACTGTACAAACATGTAGATAAAATTTACAATTATTCTTATACTTCCATATTTTTTTTAAGTATTGTAATACTATTGTATTGTATTGGACTAAATCAAAATGGTTCTTACTACCGCTTTCTTTTCATGAATTAGAAGATGGTCGTCACGTTGTTGTC ATTCCACACAATTGATTTCCACCGTGCTGACGATTGACGACTGTGACGAGTGGTGGGTGGGAAACTGTTATGCTCTTTTCAATTTATTTCTTTCCCTTTTTCCACAATAACACCAAAATTAATAAATTCTTTGCAATAAAAAAAGTATGAGGAATAAAATTAAGAAGAAAAGAGAGTCAAAATGTTAGAGGAAATGCCTGGATCGTTGGGCACAAGCGCAAGCTTAGCTCTTCGATTGGGTCAGACTTTGTTTTCATCCGCTTCCCTTTTCTTCATGTGCCTTGATGTTAATTTCTATGGCTACACTGCTTTCTGCTTCTTAGTAACGGTAATGGGTTTGGTGATTCCATGGAGTTTGACATTGGGACTAGTTGATGGCTATTCCGTCTTTGTTAAACGCCCTACACGTCAACCCGGAGTAATGACCGTTATTGTTGTAGGAGATTGGGTTTTGTCATTCCTTTCACTAGGAGCCGCTTGCTCAACCGCAAGCGTTGCACAAGTCATGATGGCGGAAATGGTTCCGCCATGCCCGGTGAAGATCTGCAGTAGATATTCTATTTCGGCTGCCATGGCTTTCTTGTCTTGGTTTCTGTCTTTTGCTTCTTCTCTCTTTAACTTGTGGATCCTTCCTAAATTATAGCTGGTTTTGTATACATATTCCTTATAGTAGATTTGCCTGGTTATATGGATAGTGAAAAAATGTTTAAAATAGGAGAGAAAAAAATAGAAGTTGGCTGCCAAAAGAAACAATGGTATTGGATGCATCACATGATTATGTCTTATATACTGTACAAACATGTAGATAAAATTTACAATTATTCTTATACTTCCATATTTTTTTTAAGTATTGTAATACTATTGTATTGTATTGGACTAAATCAAAATGGTTCTTACTACCGCTTTCTTTTCATGAATTAGAAGATGGTCGTCACGTTGTTGTC ATGTTAGAGGAAATGCCTGGATCGTTGGGCACAAGCGCAAGCTTAGCTCTTCGATTGGGTCAGACTTTGTTTTCATCCGCTTCCCTTTTCTTCATGTGCCTTGATGTTAATTTCTATGGCTACACTGCTTTCTGCTTCTTAGTAACGGTAATGGGTTTGGTGATTCCATGGAGTTTGACATTGGGACTAGTTGATGGCTATTCCGTCTTTGTTAAACGCCCTACACGTCAACCCGGAGTAATGACCGTTATTGTTGTAGGAGATTGGGTTTTGTCATTCCTTTCACTAGGAGCCGCTTGCTCAACCGCAAGCGTTGCACAAGTCATGATGGCGGAAATGGTTCCGCCATGCCCGGTGAAGATCTGCAGTAGATATTCTATTTCGGCTGCCATGGCTTTCTTGTCTTGGTTTCTGTCTTTTGCTTCTTCTCTCTTTAACTTGTGGATCCTTCCTAAATTATAG MLEEMPGSLGTSASLALRLGQTLFSSASLFFMCLDVNFYGYTAFCFLVTVMGLVIPWSLTLGLVDGYSVFVKRPTRQPGVMTVIVVGDWVLSFLSLGAACSTASVAQVMMAEMVPPCPVKICSRYSISAAMAFLSWFLSFASSLFNLWILPKL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21508.1 vs. NCBI nr
Match: gi|902180245|gb|KNA09503.1| (hypothetical protein SOVF_152830 isoform A [Spinacia oleracea]) HSP 1 Score: 295.4 bits (755), Expect = 5.600e-77 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
BLAST of Spo21508.1 vs. NCBI nr
Match: gi|731339616|ref|XP_010680953.1| (PREDICTED: CASP-like protein 5C1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 268.5 bits (685), Expect = 7.300e-69 Identity = 136/153 (88.89%), Postives = 146/153 (95.42%), Query Frame = 1
BLAST of Spo21508.1 vs. NCBI nr
Match: gi|359495759|ref|XP_003635083.1| (PREDICTED: CASP-like protein 5C1 [Vitis vinifera]) HSP 1 Score: 220.7 bits (561), Expect = 1.800e-54 Identity = 109/152 (71.71%), Postives = 127/152 (83.55%), Query Frame = 1
BLAST of Spo21508.1 vs. NCBI nr
Match: gi|697191228|ref|XP_009604682.1| (PREDICTED: CASP-like protein ARALYDRAFT_485429 [Nicotiana tomentosiformis]) HSP 1 Score: 219.9 bits (559), Expect = 3.000e-54 Identity = 110/152 (72.37%), Postives = 131/152 (86.18%), Query Frame = 1
BLAST of Spo21508.1 vs. NCBI nr
Match: gi|698526195|ref|XP_009759928.1| (PREDICTED: CASP-like protein ARALYDRAFT_485429 [Nicotiana sylvestris]) HSP 1 Score: 217.2 bits (552), Expect = 1.900e-53 Identity = 108/152 (71.05%), Postives = 130/152 (85.53%), Query Frame = 1
BLAST of Spo21508.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QS29_SPIOL (CASP-like protein OS=Spinacia oleracea GN=SOVF_152830 PE=3 SV=1) HSP 1 Score: 295.4 bits (755), Expect = 3.900e-77 Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1
BLAST of Spo21508.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EZ96_BETVU (CASP-like protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g138220 PE=3 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 5.100e-69 Identity = 136/153 (88.89%), Postives = 146/153 (95.42%), Query Frame = 1
BLAST of Spo21508.1 vs. UniProtKB/TrEMBL
Match: D7U6I9_VITVI (CASP-like protein OS=Vitis vinifera GN=VIT_00s0207g00200 PE=3 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 1.200e-54 Identity = 109/152 (71.71%), Postives = 127/152 (83.55%), Query Frame = 1
BLAST of Spo21508.1 vs. UniProtKB/TrEMBL
Match: A0A068U2M8_COFCA (CASP-like protein OS=Coffea canephora GN=GSCOC_T00039804001 PE=3 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 3.900e-53 Identity = 106/149 (71.14%), Postives = 126/149 (84.56%), Query Frame = 1
BLAST of Spo21508.1 vs. UniProtKB/TrEMBL
Match: M5VL89_PRUPE (CASP-like protein OS=Prunus persica GN=PRUPE_ppa012837mg PE=3 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 5.100e-53 Identity = 108/152 (71.05%), Postives = 125/152 (82.24%), Query Frame = 1
BLAST of Spo21508.1 vs. ExPASy Swiss-Prot
Match: CSPLU_ORYSJ (CASP-like protein 5C1 OS=Oryza sativa subsp. japonica GN=Os03g0767900 PE=2 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 5.500e-40 Identity = 83/144 (57.64%), Postives = 108/144 (75.00%), Query Frame = 1
BLAST of Spo21508.1 vs. ExPASy Swiss-Prot
Match: CSPLU_ORYSI (CASP-like protein 5C1 OS=Oryza sativa subsp. indica GN=OsI_38237 PE=2 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 4.600e-39 Identity = 82/144 (56.94%), Postives = 107/144 (74.31%), Query Frame = 1
BLAST of Spo21508.1 vs. ExPASy Swiss-Prot
Match: CSPLN_ARALL (CASP-like protein ARALYDRAFT_485429 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485429 PE=3 SV=2) HSP 1 Score: 161.4 bits (407), Expect = 7.900e-39 Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 1
BLAST of Spo21508.1 vs. ExPASy Swiss-Prot
Match: CSPLT_ARATH (CASP-like protein 5C1 OS=Arabidopsis thaliana GN=At4g37235 PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 2.300e-38 Identity = 92/148 (62.16%), Postives = 108/148 (72.97%), Query Frame = 1
BLAST of Spo21508.1 vs. ExPASy Swiss-Prot
Match: CSPLH_ARATH (CASP-like protein 5C2 OS=Arabidopsis thaliana GN=At3g50810 PE=2 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 3.900e-38 Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 1
BLAST of Spo21508.1 vs. TAIR (Arabidopsis)
Match: AT4G37235.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 159.8 bits (403), Expect = 1.300e-39 Identity = 92/148 (62.16%), Postives = 108/148 (72.97%), Query Frame = 1
BLAST of Spo21508.1 vs. TAIR (Arabidopsis)
Match: AT3G50810.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 159.1 bits (401), Expect = 2.200e-39 Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 1
BLAST of Spo21508.1 vs. TAIR (Arabidopsis)
Match: AT1G49405.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 159.1 bits (401), Expect = 2.200e-39 Identity = 79/150 (52.67%), Postives = 111/150 (74.00%), Query Frame = 1
BLAST of Spo21508.1 vs. TAIR (Arabidopsis)
Match: AT5G02060.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 102.8 bits (255), Expect = 1.900e-22 Identity = 62/151 (41.06%), Postives = 87/151 (57.62%), Query Frame = 1
BLAST of Spo21508.1 vs. TAIR (Arabidopsis)
Match: AT3G23200.1 (Uncharacterised protein family (UPF0497)) HSP 1 Score: 99.4 bits (246), Expect = 2.100e-21 Identity = 53/147 (36.05%), Postives = 86/147 (58.50%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21508.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21508.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21508.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21508.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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