Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTTGTAATTTTCATATCTAATAAATATGTACCGTTCTCATCTCATCCCCCTTTCCCCCCAAATGAAAACAACACATCTTGCATCTTATCCAAACAAAAAAAATAGAGGACTCAAATGCATTGGCCTCAAAAACACCACTAACAAAAACCAAAACATGCTCAAACACACAATTCCTTAAACTAAACCAGAAGCAACTAATATAACTATGGCAGCTGCTTCATCATCATACATTTCATCACTAAAACTCCCCACTTTTTCATCAAACATTCAAAGCAAAAAAGTCCCAACAAAGAGGCTCAACTTCAATTTCCGTATTTCAGCTCAACAGGAAACTGAAGTTCAGGAATCAGAGCAACTGAAAGTAGAAAATGAGAAGGTAGAAGAACAAGATGAAATGAAAGAAGTGCTGAAAAGAGCAACACCAATTGAAGCACAAGTGAATGTGAAGAGCAGAAACTTGGAAAGAGAATATGGAGGGCAATGGCTTAGCAGTGTAACCAGACATGTTAGGATTTATGCTGCATATATTGACCCTGTAACTTGTGCAATGGATCAAACCCAGATGGATAAACTCACACTTATGATTGATCCAACTGATGAATTCTTGTGGAATGATGAGACCTTGAACAAGGTTTATGTCTACTTTGAAGAGCTTGTTGATCATTATGAGGTATGATCTCTAACTTCGTCAGAGGAATGGGCTACTTAGAATTAGAGATGGCTAACGTGGCGGGTTGGGTGGGTTTGGTGGGTTGTGGGTTGGAGATAATAATCATGACTCGCCTAAGTTAACTTAGGGTGGGTAGAATCGTGAGTTGTGTCGGAAAAAAATGGATACAGTACATAATGGGTCGTGGCCTCGTGGGTTGTGTGGATCGTGGGTCATGGTGGGTTGTGACTTGTGCGGGTCGAGTGAGTCTGGTGTATTTGGTGGGTTACGATAGATTTTGAGGCTTAGTGTGACTTCGATGGGTCAGGTGGGTTTGGTGTGTTTAGACAAGTTTTACGAGCTTATTTGGGTCAGGTGGATTTGGACGACTACTTAAGAGTAAAAAAGTTATAAATTTCATATAAACTTAAATTAATTGATTTTTTTTGTTATTCACATACTAATGTAAATGTGGTTAATGTACATTTAAACAATAAAATTAAAATTTATTAGCAAGATACAAAATAGTTTAAATTAAGTTATTGAGATGGCGGGTCTGGTGTGTCACAAGGTTAGGTGGGTTGGGTGGGTCGAGTGTGTTGTGGTGGGTTGTGTCGGGTTCGATAGGATGGATTGAAATAGGTTGTGTTGAAAAAAATCGACCCACTACACATCAAGAAAAATACGAAGTATACAGGTTTCGCGGGTTGTATCATGGGTCATTAGTAGGTCCGACCCACTTATGACCCATTATAGGCTGTGTTAGGGTGGGCTGGGTAAAACCCAACTCACTGGCCATCTCTACTCATAATTATATCAGGAACTGCTGAATGCTCTGACACAATCTAATCTTTATTCACAAAAACCAGGGTGCACCTCTGACAGAATACACTCTCCGCCTCATTGGTTCAGACATAGAACATTACATAAGAAAGATGCTCTATGAAGGTGAGATCAAATACAACATGAATTCAAGAGTCTTAAACTTCAGCATGGGAAAACCAAGGATGAAATTCAACAGCAACGAGATTCCAGATGTACAGTAATATCAACAACCAGATGATGGAAATCAGAAACAGGTATTTATGTCATAATATATATATATATATAACCCATCTTATTATTATTATCTAAACACATAGAAACTTGACTTACAAAAAGGGAGTCTTCAATGAACTAGGTTATTCATTGATCCATTCCCTTTGTTCAACATTTGTGTATCTATGCGCGGTTAACTATAGCTAAAATCAGAATTTGATGTGAGAATTTCACAAAATTAACCATGACGTTTCTCAGAACTACAGTCAAGTGTTACCATTTTATAGTCATCTAGGACGATCCAGGCAAAATACTCCTAGACAAATCATCCTTCCAAGGAAACCCAGGATTTATTTCAAATGAAGGGATTTTCTGGTGACAAGAACAAAGGCAACTGTTAGAATTCCACAAAAAATAATCATAAAAACAATGGACTTTTTACAACTAAAAAGACAACAAATAGAAAAAAAGGCATTGCCAAAAAGTATTAACATCATAGTTCAAAAGTAGTCCACAACCAATGCATTAATGTGTAATACTCACTCCGTCCCATAATTATGGTCATGTTTTATATTTCAGGCGTCCCAAATTTATAGTCTTGTTTCCTTATTTGGATATTACTTTTCCCACTTTCCCATACACTTCCACTTTCCCACTTTCCCATACAATATATTCCACATTTTACACTTTCCCATACACTATATTCCACTTTCCCATACACTCTCCCACTTTCTCATACACTATATTCCAATTTTCTTAAAACCCGTGTTTTTAGTCAAACATAACTATAATTTTAGGACGGAGGGAGTAACACATATAGCCACAAAGATCATCAAGCTACACTGCTCCTAAAATGCTCTTCGTCAGGATCAGAGCATGCAATATACTATATACGTGGCTACTGCAGTTTGCAATAATTTATGTTGATAGGATTTACAAACTTCAAAATTGTTTAAAGTTTGACTGAAATATTTTATGTTAATCTTCAAATTCCATACTATTTCATTACAGCATAGTTTGCATCATGAAACAAAGTGTCAGAGGTTTTCCTTCCTTCAAGTTACTTCCTTCCATGTCATGGTTAACTCGTACACTGCCTATACTATAAGGTAGATAAGACATTACTGGTGGAAGCAAGGACATAGGGGTGGAAGCATATAAAAAAAAAACGTTCCAAAAAATCACATCCTTTATTTATAAAGACAATCAATTAACAAACAGAGTTATAATTTAGATGTAGTTAATACAATTTCAGTAGGATATTGTCCATTCAAAAGCAAATCTACTGTTTATATAATGTATAATGAGAACGCAGATGTTGGGTGATTTGGGTCTTTCAAGTCTGGAATTACAAAGACATATGTTTGATGTGAATGACTCATCTTGAAACAATTTCTCTCTTAACAAGGAGAACAGGAGGATCTAAAACTATCAGCAAAGAGTTTTTTTCCATTTGCCATCACTTCTAATAAAAATAAATTACAATCAACATCATTCCCAGTACTTTAGTGTTACTATTTCTGTTTTTGTATTTGGGTCATACTATTTAATACGAAGTATTAGATTTTTTTTTTTGGGTGCGAACTATTAGTATACAAACACTGTAACAAATTACTACTAGCATATGGGGAGGCCAAGTTATACTGGTGGGATTTTGTTTCCCAGGAAGAGCATCTGAGTATGGCCAAATATACTATGGACTAACTTGCCAGATTAATGAACTTGCAAAACTGTGTTCATGTTAATAACACAATCCCCAAGAAAGATACGGAGAAAATAAAACCATCAAACACAAGATAAATGAGTTGTTACCTTCAGATAGAATGCACACATTCGTAGCAGATTCAAGACCTTAGGATGATCGGATTTGACCTTTTGTATTTCTTCGTTCAGATCTGACATCAAGATTAGCAAAAATTTGATGAAATAACAGTCAACTTTTTTAAACAGACATCAATCTTCATATAATTAAAGAAGGATAAAAGGATGTAGTTTGCAAATAAACATCAGGCAAGCACGTGACCAGAAAAGTAGAAAAGCAAAGGATTTCTAGGACTTTTCTAATAACAGAAATAAAACAACCTAAGTGTGGTACAGCTGCTACTCAAACCATGGGATCAGCTTAGCTACGGGCTACCAAATGCAATGTGAGAAAAATGAGCATAACGAAGTCGAGTTTTCATCATTGTATATTCAGCTTTTAGGGTTTGGGTTAGCAGAAAATCACTAGTTCATTTTAGTTTTATTCCATCAGATGCCAAGACCTAAAATATGTAATTTAACACAACAATGTATAAAATTGTAATCCTATAAAAAAATTGTTGACTGAAAATATTGAATAGAACTAAAATCATACAACTTCAGTGATTCTTTTCTATGTTGTTCCATATTTCTATTGACCCAAAAAAAAAAGGGAATTCTGAGAGACTAATTTTCAAAACATTTCAGAAGAATCTTAATTTTGTCAAGTATAGATCATAATCCTCAAATGGTTTATAATACTCTTGTCTGATTGTTTTGCAGATAGGACGTTAAATGTGTACCAGAAGACAGAAGACTGAAAGTTTCAGAACCTCAGTTGATATTTAGAAATCTTATGCTGAAAAGTGATAACTTGTTGATAAAGGACATTTAAAAGAAACAGCTTTTTCGGTTGTGCTTTTGATATTGGCCACGTTTATACTCATGGCTGGAAAGATTATTCTACAAATGTCACTATTCAAGATATGTTGATATAACATTTCTTCGGCAAAGCCAAATAAAAGTTATCGTTGTTCTCTCACAGAAACATAATCGTGAATAGTTCGGTATTAATTTATAATTCATTGTCAAGGTAGGAAAAACATACACCCTCCCCCCTCCCCACACGCACAATCTCATCCCCACCCATCCCCCTTTTCAAAGAGGAAGAAGGAAGCCCATACGCTCTCGCACTCAATAAGACATAAGAGGTCACATGTTTTAAATCATTGCACCAAGTATAACGTGATTTATGAGATTCTAATCAACAGTTGCACACTGCCTTAAGCTTACTGATAATAAGGAAGACAGAAATAATAAAAGCATTGTAATTCGCAAAGCCAAACACAACTAACCAGGATATAAATCAAGATAAGATTTTCCCAAATGTCCCAGTTTGTCAGTTCCTCCACTGCGAGATTCCCTATGAATTTTCACAGGCTTTCTAGTAGACAATTGCTCCC TTTGTAATTTTCATATCTAATAAATATGTACCGTTCTCATCTCATCCCCCTTTCCCCCCAAATGAAAACAACACATCTTGCATCTTATCCAAACAAAAAAAATAGAGGACTCAAATGCATTGGCCTCAAAAACACCACTAACAAAAACCAAAACATGCTCAAACACACAATTCCTTAAACTAAACCAGAAGCAACTAATATAACTATGGCAGCTGCTTCATCATCATACATTTCATCACTAAAACTCCCCACTTTTTCATCAAACATTCAAAGCAAAAAAGTCCCAACAAAGAGGCTCAACTTCAATTTCCGTATTTCAGCTCAACAGGAAACTGAAGTTCAGGAATCAGAGCAACTGAAAGTAGAAAATGAGAAGGTAGAAGAACAAGATGAAATGAAAGAAGTGCTGAAAAGAGCAACACCAATTGAAGCACAAGTGAATGTGAAGAGCAGAAACTTGGAAAGAGAATATGGAGGGCAATGGCTTAGCAGTGTAACCAGACATGTTAGGATTTATGCTGCATATATTGACCCTGTAACTTGTGCAATGGATCAAACCCAGATGGATAAACTCACACTTATGATTGATCCAACTGATGAATTCTTGTGGAATGATGAGACCTTGAACAAGGTTTATGTCTACTTTGAAGAGCTTGTTGATCATTATGAGGGTGCACCTCTGACAGAATACACTCTCCGCCTCATTGGTTCAGACATAGAACATTACATAAGAAAGATGCTCTATGAAGGTGAGATCAAATACAACATGAATTCAAGAGTCTTAAACTTCAGCATGGGAAAACCAAGGATGAAATTCAACAGCAACGAGATTCCAGATGTACAGTAATATCAACAACCAGATGATGGAAATCAGAAACAGATAGGACGTTAAATGTGTACCAGAAGACAGAAGACTGAAAGTTTCAGAACCTCAGTTGATATTTAGAAATCTTATGCTGAAAAGTGATAACTTGTTGATAAAGGACATTTAAAAGAAACAGCTTTTTCGGTTGTGCTTTTGATATTGGCCACGTTTATACTCATGGCTGGAAAGATTATTCTACAAATGTCACTATTCAAGATATGTTGATATAACATTTCTTCGGCAAAGCCAAATAAAAGTTATCGTTGTTCTCTCACAGAAACATAATCGTGAATAGTTCGGTATTAATTTATAATTCATTGTCAAGGTAGGAAAAACATACACCCTCCCCCCTCCCCACACGCACAATCTCATCCCCACCCATCCCCCTTTTCAAAGAGGAAGAAGGAAGCCCATACGCTCTCGCACTCAATAAGACATAAGAGGTCACATGTTTTAAATCATTGCACCAAGTATAACGTGATTTATGAGATTCTAATCAACAGTTGCACACTGCCTTAAGCTTACTGATAATAAGGAAGACAGAAATAATAAAAGCATTGTAATTCGCAAAGCCAAACACAACTAACCAGGATATAAATCAAGATAAGATTTTCCCAAATGTCCCAGTTTGTCAGTTCCTCCACTGCGAGATTCCCTATGAATTTTCACAGGCTTTCTAGTAGACAATTGCTCCC ATGGCAGCTGCTTCATCATCATACATTTCATCACTAAAACTCCCCACTTTTTCATCAAACATTCAAAGCAAAAAAGTCCCAACAAAGAGGCTCAACTTCAATTTCCGTATTTCAGCTCAACAGGAAACTGAAGTTCAGGAATCAGAGCAACTGAAAGTAGAAAATGAGAAGGTAGAAGAACAAGATGAAATGAAAGAAGTGCTGAAAAGAGCAACACCAATTGAAGCACAAGTGAATGTGAAGAGCAGAAACTTGGAAAGAGAATATGGAGGGCAATGGCTTAGCAGTGTAACCAGACATGTTAGGATTTATGCTGCATATATTGACCCTGTAACTTGTGCAATGGATCAAACCCAGATGGATAAACTCACACTTATGATTGATCCAACTGATGAATTCTTGTGGAATGATGAGACCTTGAACAAGGTTTATGTCTACTTTGAAGAGCTTGTTGATCATTATGAGGGTGCACCTCTGACAGAATACACTCTCCGCCTCATTGGTTCAGACATAGAACATTACATAAGAAAGATGCTCTATGAAGGTGAGATCAAATACAACATGAATTCAAGAGTCTTAAACTTCAGCATGGGAAAACCAAGGATGAAATTCAACAGCAACGAGATTCCAGATGTACAGTAA MAAASSSYISSLKLPTFSSNIQSKKVPTKRLNFNFRISAQQETEVQESEQLKVENEKVEEQDEMKEVLKRATPIEAQVNVKSRNLEREYGGQWLSSVTRHVRIYAAYIDPVTCAMDQTQMDKLTLMIDPTDEFLWNDETLNKVYVYFEELVDHYEGAPLTEYTLRLIGSDIEHYIRKMLYEGEIKYNMNSRVLNFSMGKPRMKFNSNEIPDVQ Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21566.1 vs. NCBI nr
Match: gi|902194833|gb|KNA12674.1| (hypothetical protein SOVF_123730 [Spinacia oleracea]) HSP 1 Score: 411.8 bits (1057), Expect = 7.500e-112 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1
BLAST of Spo21566.1 vs. NCBI nr
Match: gi|731313210|ref|XP_010678947.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 325.9 bits (834), Expect = 5.400e-86 Identity = 167/211 (79.15%), Postives = 193/211 (91.47%), Query Frame = 1
BLAST of Spo21566.1 vs. NCBI nr
Match: gi|356509365|ref|XP_003523420.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic-like [Glycine max]) HSP 1 Score: 258.5 bits (659), Expect = 1.100e-65 Identity = 137/211 (64.93%), Postives = 167/211 (79.15%), Query Frame = 1
BLAST of Spo21566.1 vs. NCBI nr
Match: gi|225459675|ref|XP_002285884.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Vitis vinifera]) HSP 1 Score: 258.1 bits (658), Expect = 1.400e-65 Identity = 139/213 (65.26%), Postives = 167/213 (78.40%), Query Frame = 1
BLAST of Spo21566.1 vs. NCBI nr
Match: gi|1009136874|ref|XP_015885760.1| (PREDICTED: NAD(P)H-quinone oxidoreductase subunit M, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 257.7 bits (657), Expect = 1.800e-65 Identity = 134/212 (63.21%), Postives = 170/212 (80.19%), Query Frame = 1
BLAST of Spo21566.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R176_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_123730 PE=4 SV=1) HSP 1 Score: 411.8 bits (1057), Expect = 5.200e-112 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1
BLAST of Spo21566.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D1G2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g010290 PE=4 SV=1) HSP 1 Score: 325.9 bits (834), Expect = 3.800e-86 Identity = 167/211 (79.15%), Postives = 193/211 (91.47%), Query Frame = 1
BLAST of Spo21566.1 vs. UniProtKB/TrEMBL
Match: A0A0F7GZI2_9ROSI (NADH dehydrogenase-like complex M OS=Francoa sonchifolia GN=NDHM PE=2 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 7.400e-66 Identity = 138/209 (66.03%), Postives = 163/209 (77.99%), Query Frame = 1
BLAST of Spo21566.1 vs. UniProtKB/TrEMBL
Match: I1JZ11_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G245200 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 7.400e-66 Identity = 137/211 (64.93%), Postives = 167/211 (79.15%), Query Frame = 1
BLAST of Spo21566.1 vs. UniProtKB/TrEMBL
Match: A0A0B2SJ25_GLYSO (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Glycine soja GN=glysoja_024517 PE=4 SV=1) HSP 1 Score: 258.5 bits (659), Expect = 7.400e-66 Identity = 137/211 (64.93%), Postives = 167/211 (79.15%), Query Frame = 1
BLAST of Spo21566.1 vs. ExPASy Swiss-Prot
Match: NDHM_VITVI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Vitis vinifera GN=ndhM PE=2 SV=1) HSP 1 Score: 258.1 bits (658), Expect = 8.600e-68 Identity = 139/213 (65.26%), Postives = 167/213 (78.40%), Query Frame = 1
BLAST of Spo21566.1 vs. ExPASy Swiss-Prot
Match: NDHM_POPJC (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Populus jackii GN=ndhM PE=2 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 4.400e-64 Identity = 130/211 (61.61%), Postives = 166/211 (78.67%), Query Frame = 1
BLAST of Spo21566.1 vs. ExPASy Swiss-Prot
Match: NDHM_ARATH (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Arabidopsis thaliana GN=ndhM PE=2 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 6.200e-58 Identity = 123/208 (59.13%), Postives = 159/208 (76.44%), Query Frame = 1
BLAST of Spo21566.1 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSI (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. indica GN=ndhM PE=3 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 5.300e-57 Identity = 125/226 (55.31%), Postives = 160/226 (70.80%), Query Frame = 1
BLAST of Spo21566.1 vs. ExPASy Swiss-Prot
Match: NDHM_ORYSJ (NAD(P)H-quinone oxidoreductase subunit M, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhM PE=2 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 5.300e-57 Identity = 125/226 (55.31%), Postives = 160/226 (70.80%), Query Frame = 1
BLAST of Spo21566.1 vs. TAIR (Arabidopsis)
Match: AT4G37925.1 (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex) HSP 1 Score: 225.3 bits (573), Expect = 3.500e-59 Identity = 123/208 (59.13%), Postives = 159/208 (76.44%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21566.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21566.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21566.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21566.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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