Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCGAGGGATCATAATTATGTATTTCTAATAGAGATCGATCGAGAGGAGGCAGCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAGTATGAGTACTGCAGCGGGAAAAGAGAAAGATAAAGAGAAGGTGGTGGTATGTGTAACAGGTGCATCTGGTTATATTGGTTCATGGCTTGTTAAAACCTTACTTCATCATGGTTACACCGTTCATGCCACGGTTCGTCACCTAAGTATGTACCCCTCCCTTCCATCTCTTTGCCACACACATACCACTTCTTTTGTATTATATCGTATACCTCTTGTACTGTCGTGTAACTTAGGGGTGTTAATGAGCTGGGCCGAGATCGAGTTTGTGGGCTCGAGCTCTAGTTCGAAACACGAGAATCGAGCTCGGTTTGGCTCCAAGCTAGGTAGACTCGTTCAATCGTTCAAGGTTGATCGTCAAATGTTTGATTAAGAAACATATTTATCAAAATTTTCATGTTTTATATGGTTAAAATAAATATCTATTAAAAATTAATTTATGCAATATAAATAAAATACATGTATTAAAAAGGTGATGATAAAAGTCCAAAGTTGCGATAATATTTAGTTGTCGTAATCCTAATTTTTGGATTCTAAATGGTGTATATGAGCGCCACATAGGGCATGCCTGCTTCATCAAAATATTTTTACTATGAAAATTTGTAAATGAGATAGTCGACACAAAGAAATAAACAAATATTTTAAGTACAAATTATAAATATTTTTTTTGAAATAAAAAATTACATTATTCAATTTGTAAATTAGAATATTATTAGGAATTTCCTACCCTTTTTTTTGTAAGATGTATAGTTGTATAATACTACCTCCGTTTTAGAAAGTTCTTTACACTTTGGAAAATGTGTCCAAATTATAAAAACTTTGACCGTAAATTCTCACCATTATATACATCAAAACGTTACATGTAAGATCATGTTAGATTGGTCTCGAGATGTATTTTCAGAATATCAAACTTTTATAATTTTTTCACATACGAAATTGGATATATTAGTAGTTAAATATTGCAGTGGAGTTCGTGCAAATAGTAACTGTAAAGATCTTTTTGAAACGAAAGTAGTAGTTTTGATAAGTTCAAATAAGTTCAGATAAAATAAGTTCAGGAAAAATAAGTGGAAATCAGGTGAATAGAACGCAGCCTAAGTCACAAGTTCAAAACCCTTTTCAGTCTCCCGCATTTATGATGTCTTTGTGCTCATTCGAAAAAATAAAGTAAAATATGGGTAAATAATAATATTTGGATGTGAGTTGGTTTAAGACAAATGCATTGAATTTGTATGTAGATGATCCAGAAAAGGTAGAGCATCTGATGAGATTAGAGGGAGCAAAAGAGAGGCTTAAATTATTCAAAGCGGATCTAATTGAAGAAGGTTCCTTTGATTCAGCAATTTCTGGATGTCATGGTGTTTTCCATACTGCTTCTCCTGTTAATTTCAACGTCAAAGATCCACAGGTTCCACATTCATTATTAATTTATTACCTACCTAAGCTAATTCGATCACCAATTTATTTATTTTTATTAACTGAAAATGTTATCCGTCAAACCAAAATGAATCCTAACGAGGCATTCTACAAATACGCATGCTTAATGATTAATATGGATATACAGTGGTAGAGACACGAGGTTTAAGTAGGGTCATGTGACTCTACTTACCCAAAAAAAAAAAAAACTACTTTTAGTTAAGTTTTTTTTTTTTTTTTTAAAAAAACACTTAATTTCAGTTAATTTGTCATTATTTTTAAGTAATGACTTCACTATCTATATTTTCTGAATCGCCACTGTGCATATAGGCTGAACTACTTGATCCAGCAATAAAGGGAACACTGAATGTTCTGAATTCATGTAAAAGGGTTGCTTCTGTAACAAGAGTTGTATTAACATCCTCCACCGCGGCAGTTCTATTCACTGGTGTACCTCTAGCGGCCGACGTGGTGGTTGATGAAACTTGGTTTTCTAAACCACAATTCTGGAACCTATACCCTCACATGGTATGTACGTACGAAGCTAGTACTGTGTATTATGTTCCTCTATTACTCTTTACGCTTTCCGTTTTAATTCGTTGCTGAAATTTCTTTACGCTCTACTTTATTTCATTTTTGGCATATAATTTTACATTTATCCCCTCATTTGGCCCACCACAAGATCCACAATAAACTTGACCATCATGAGCCGGCCTGAAAAGACGAGTTTGGGAAGAATGTTAAGCCCATTTTGGGCCCAACCCGACCCAACGAGTATGAATTTTGGTCATGGCTCGGCTGGAACCTGTTTTGTACTTCCTTTTGATCAGGCCGGTCTAGTCCACACTATACAGGTTGTAAATGAAGCATTTTATTATGAAAATCCACCAAAATTTACGCATTCATATATAATACTATAATACATACGGAGTAGTATGAAGTATCAATTTTTCAGCCACTTATATAGTTGGACAATTTATAACCCTCACCATCACATGCTAAACAAAATTTCTCTAGGGTCTGATTTCAGTTTTTTGTTTTTATATAAAACTAAAAACCAAGATATGAAAATCACAAAAAGTAGTTTTCAATTTTTTGTTGTCAGTTTTTAAAATCAACATGATAATTATAGGTATGATAATGATTTGTTAGTTCATTAATCAATTTAAATCATCTAACTTTTAAAAATTAAAATCAAAAACTGAAAATTAGCAGTAATACCGAACGGGCCATAATTAACGTGCAAATAGTAAGCGTAAAGATCATTCAGTAACAGAGGTATTATACATACTCTCGAGATTTATTAAATTATTTTGTTTTAATTTTTGAAGATGTGGTATGTGATGTCAAAAACTTTGGCTGAAGAAGCGGCGTGGAAGTTTGCTAAAGAGCATGACCTTGACTTGATCTCAGTGAACCCAAGCATGGTCATAGGTCCTATGTTGCCTGCCAAGCTTAATGAAACCGTAGCTCTAATTCTCAATTTGATAAATGGTTAGTAACACTAATTACCTAAATGTTACGTACTGTAGTACTCCTATATATTTAACCCTTGAAAAAAGACTTGCATGATAAAGGTCGCAAGTTGCGACAATATTTAGTTGTCGCAATCTTACGTGTCGCAGTTTAATTGGTACATATAGGCGACACGTAGGCTATGAGTCATAATAATATTTTTACCATCAATGCAATATTTTTACTATGAAAATATGTAAATAAGGTAGTCGATATATATAAATAAGGAAACAAATTAGAATATTAAGATTTTCCTAGCTTTTTTTTGAAACGTTTAAAGTAGGATATATAAATTAAATATTTTAGTTTCCAATTTAATCATGACACATAAGCATGCCATGTCATCATTGTGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCATTTTCGTTAATTGTTATTAATTGTTAATTGTTAGGTGCACAAACATATCCAAACTTGTCATTACCATGGGTGCACATCCAAGATGTCGCGGAAGCTCACATCCGTGCATTTGAGGCCCCTTCGGCTAATGGAAGGTATTGCTTAGTCGAAAGTGTGGTGCATTATTCAGAGATTGTCAAGTTGTTACACGAGCTCTATCCTACTCTTCAACTTCCTAATAAGTGAGTTATATTAATTACGTTGTTGGATTTTAATTAATCAATACATTTTTCAATCATAATATATGCATGTCGTCTCACTCTCTTGTAATTAACGTACGTTTTTTGTTTTTGATTAGGTGTGTAGATGAAGGACCATCCATGGAAACATACCAATTCTCCAAAGCTAAAGCTGAAAGCCTTCGCATTCACTTTATTCCTCTAAAAGACAGTATTAAGGATACGGTTGAAAACCTAAAAGAGAAGAAATTAATTAGTATTCCTAATTAAATAATGCTACTTTTTTTTTTTTTTTTTTTTTTTGAGGGAAATTAAATAATGCTACTTAATTTGAACATTTTGAATATTTTCATTTATATTGTAACATGTCTTTAATATTCAGTCAAATATCGTGCAA TCGAGGGATCATAATTATGTATTTCTAATAGAGATCGATCGAGAGGAGGCAGCAAAGAAGAAGAAGAAGAAGAAGAAGAAGATGAGTATGAGTACTGCAGCGGGAAAAGAGAAAGATAAAGAGAAGGTGGTGGTATGTGTAACAGGTGCATCTGGTTATATTGGTTCATGGCTTGTTAAAACCTTACTTCATCATGGTTACACCGTTCATGCCACGGTTCGTCACCTAAATGATCCAGAAAAGGTAGAGCATCTGATGAGATTAGAGGGAGCAAAAGAGAGGCTTAAATTATTCAAAGCGGATCTAATTGAAGAAGGTTCCTTTGATTCAGCAATTTCTGGATGTCATGGTGTTTTCCATACTGCTTCTCCTGTTAATTTCAACGTCAAAGATCCACAGGCTGAACTACTTGATCCAGCAATAAAGGGAACACTGAATGTTCTGAATTCATGTAAAAGGGTTGCTTCTGTAACAAGAGTTGTATTAACATCCTCCACCGCGGCAGTTCTATTCACTGGTGTACCTCTAGCGGCCGACGTGGTGGTTGATGAAACTTGGTTTTCTAAACCACAATTCTGGAACCTATACCCTCACATGATGTGGTATGTGATGTCAAAAACTTTGGCTGAAGAAGCGGCGTGGAAGTTTGCTAAAGAGCATGACCTTGACTTGATCTCAGTGAACCCAAGCATGGTCATAGGTCCTATGTTGCCTGCCAAGCTTAATGAAACCGTAGCTCTAATTCTCAATTTGATAAATGGTGCACAAACATATCCAAACTTGTCATTACCATGGGTGCACATCCAAGATGTCGCGGAAGCTCACATCCGTGCATTTGAGGCCCCTTCGGCTAATGGAAGGTGTGTAGATGAAGGACCATCCATGGAAACATACCAATTCTCCAAAGCTAAAGCTGAAAGCCTTCGCATTCACTTTATTCCTCTAAAAGACAGTATTAAGGATACGGTTGAAAACCTAAAAGAGAAGAAATTAATTAGTATTCCTAATTAAATAATGCTACTTTTTTTTTTTTTTTTTTTTTTTGAGGGAAATTAAATAATGCTACTTAATTTGAACATTTTGAATATTTTCATTTATATTGTAACATGTCTTTAATATTCAGTCAAATATCGTGCAA ATGAGTATGAGTACTGCAGCGGGAAAAGAGAAAGATAAAGAGAAGGTGGTGGTATGTGTAACAGGTGCATCTGGTTATATTGGTTCATGGCTTGTTAAAACCTTACTTCATCATGGTTACACCGTTCATGCCACGGTTCGTCACCTAAATGATCCAGAAAAGGTAGAGCATCTGATGAGATTAGAGGGAGCAAAAGAGAGGCTTAAATTATTCAAAGCGGATCTAATTGAAGAAGGTTCCTTTGATTCAGCAATTTCTGGATGTCATGGTGTTTTCCATACTGCTTCTCCTGTTAATTTCAACGTCAAAGATCCACAGGCTGAACTACTTGATCCAGCAATAAAGGGAACACTGAATGTTCTGAATTCATGTAAAAGGGTTGCTTCTGTAACAAGAGTTGTATTAACATCCTCCACCGCGGCAGTTCTATTCACTGGTGTACCTCTAGCGGCCGACGTGGTGGTTGATGAAACTTGGTTTTCTAAACCACAATTCTGGAACCTATACCCTCACATGATGTGGTATGTGATGTCAAAAACTTTGGCTGAAGAAGCGGCGTGGAAGTTTGCTAAAGAGCATGACCTTGACTTGATCTCAGTGAACCCAAGCATGGTCATAGGTCCTATGTTGCCTGCCAAGCTTAATGAAACCGTAGCTCTAATTCTCAATTTGATAAATGGTGCACAAACATATCCAAACTTGTCATTACCATGGGTGCACATCCAAGATGTCGCGGAAGCTCACATCCGTGCATTTGAGGCCCCTTCGGCTAATGGAAGGTGTGTAGATGAAGGACCATCCATGGAAACATACCAATTCTCCAAAGCTAAAGCTGAAAGCCTTCGCATTCACTTTATTCCTCTAAAAGACAGTATTAAGGATACGGTTGAAAACCTAAAAGAGAAGAAATTAATTAGTATTCCTAATTAA MSMSTAAGKEKDKEKVVVCVTGASGYIGSWLVKTLLHHGYTVHATVRHLNDPEKVEHLMRLEGAKERLKLFKADLIEEGSFDSAISGCHGVFHTASPVNFNVKDPQAELLDPAIKGTLNVLNSCKRVASVTRVVLTSSTAAVLFTGVPLAADVVVDETWFSKPQFWNLYPHMMWYVMSKTLAEEAAWKFAKEHDLDLISVNPSMVIGPMLPAKLNETVALILNLINGAQTYPNLSLPWVHIQDVAEAHIRAFEAPSANGRCVDEGPSMETYQFSKAKAESLRIHFIPLKDSIKDTVENLKEKKLISIPN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21577.1 vs. NCBI nr
Match: gi|902207063|gb|KNA15611.1| (hypothetical protein SOVF_096730 [Spinacia oleracea]) HSP 1 Score: 605.9 bits (1561), Expect = 3.900e-170 Identity = 309/338 (91.42%), Postives = 309/338 (91.42%), Query Frame = 1
BLAST of Spo21577.1 vs. NCBI nr
Match: gi|902191739|gb|KNA11911.1| (hypothetical protein SOVF_130830 [Spinacia oleracea]) HSP 1 Score: 473.8 bits (1218), Expect = 2.300e-130 Identity = 242/336 (72.02%), Postives = 265/336 (78.87%), Query Frame = 1
BLAST of Spo21577.1 vs. NCBI nr
Match: gi|731325749|ref|XP_010673671.1| (PREDICTED: cinnamoyl-CoA reductase 1-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 443.4 bits (1139), Expect = 3.400e-121 Identity = 225/326 (69.02%), Postives = 257/326 (78.83%), Query Frame = 1
BLAST of Spo21577.1 vs. NCBI nr
Match: gi|731325737|ref|XP_010673664.1| (PREDICTED: tetraketide alpha-pyrone reductase 1-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 394.8 bits (1013), Expect = 1.400e-106 Identity = 205/322 (63.66%), Postives = 238/322 (73.91%), Query Frame = 1
BLAST of Spo21577.1 vs. NCBI nr
Match: gi|902191738|gb|KNA11910.1| (hypothetical protein SOVF_130820 [Spinacia oleracea]) HSP 1 Score: 388.7 bits (997), Expect = 9.800e-105 Identity = 199/320 (62.19%), Postives = 235/320 (73.44%), Query Frame = 1
BLAST of Spo21577.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7Z5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_096730 PE=4 SV=1) HSP 1 Score: 605.9 bits (1561), Expect = 2.700e-170 Identity = 309/338 (91.42%), Postives = 309/338 (91.42%), Query Frame = 1
BLAST of Spo21577.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZD0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_130830 PE=4 SV=1) HSP 1 Score: 473.8 bits (1218), Expect = 1.600e-130 Identity = 242/336 (72.02%), Postives = 265/336 (78.87%), Query Frame = 1
BLAST of Spo21577.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRC1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g072980 PE=4 SV=1) HSP 1 Score: 443.4 bits (1139), Expect = 2.300e-121 Identity = 225/326 (69.02%), Postives = 257/326 (78.83%), Query Frame = 1
BLAST of Spo21577.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLZ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g072970 PE=4 SV=1) HSP 1 Score: 394.8 bits (1013), Expect = 9.500e-107 Identity = 205/322 (63.66%), Postives = 238/322 (73.91%), Query Frame = 1
BLAST of Spo21577.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXC3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_130820 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 6.800e-105 Identity = 199/320 (62.19%), Postives = 235/320 (73.44%), Query Frame = 1
BLAST of Spo21577.1 vs. ExPASy Swiss-Prot
Match: TKPR1_ARATH (Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.900e-60 Identity = 138/324 (42.59%), Postives = 193/324 (59.57%), Query Frame = 1
BLAST of Spo21577.1 vs. ExPASy Swiss-Prot
Match: DFRA_GERHY (Dihydroflavonol-4-reductase OS=Gerbera hybrida GN=DFR PE=2 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 6.000e-54 Identity = 114/282 (40.43%), Postives = 168/282 (59.57%), Query Frame = 1
BLAST of Spo21577.1 vs. ExPASy Swiss-Prot
Match: DFRA_CALCH (Dihydroflavonol-4-reductase OS=Callistephus chinensis GN=F PE=2 SV=1) HSP 1 Score: 210.7 bits (535), Expect = 2.300e-53 Identity = 120/304 (39.47%), Postives = 179/304 (58.88%), Query Frame = 1
BLAST of Spo21577.1 vs. ExPASy Swiss-Prot
Match: CCR1_ARATH (Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1) HSP 1 Score: 210.3 bits (534), Expect = 3.000e-53 Identity = 132/322 (40.99%), Postives = 185/322 (57.45%), Query Frame = 1
BLAST of Spo21577.1 vs. ExPASy Swiss-Prot
Match: DFRA_MALDO (Bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase OS=Malus domestica GN=DFR PE=1 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 5.100e-53 Identity = 123/300 (41.00%), Postives = 177/300 (59.00%), Query Frame = 1
BLAST of Spo21577.1 vs. TAIR (Arabidopsis)
Match: AT5G19440.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 349.4 bits (895), Expect = 2.300e-96 Identity = 188/318 (59.12%), Postives = 225/318 (70.75%), Query Frame = 1
BLAST of Spo21577.1 vs. TAIR (Arabidopsis)
Match: AT1G51410.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 340.9 bits (873), Expect = 8.300e-94 Identity = 179/322 (55.59%), Postives = 227/322 (70.50%), Query Frame = 1
BLAST of Spo21577.1 vs. TAIR (Arabidopsis)
Match: AT1G09480.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 307.0 bits (785), Expect = 1.300e-83 Identity = 168/331 (50.76%), Postives = 217/331 (65.56%), Query Frame = 1
BLAST of Spo21577.1 vs. TAIR (Arabidopsis)
Match: AT1G09510.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 300.4 bits (768), Expect = 1.200e-81 Identity = 159/318 (50.00%), Postives = 207/318 (65.09%), Query Frame = 1
BLAST of Spo21577.1 vs. TAIR (Arabidopsis)
Match: AT1G09490.1 (NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 297.7 bits (761), Expect = 8.000e-81 Identity = 159/318 (50.00%), Postives = 210/318 (66.04%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21577.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21577.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21577.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21577.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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