Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCACAAATTGACAATAAAATAATCCCAAACCACGAAATTTCCCCCAAATAATTTTAAAAATTACATAAAAAGAAGTTCCCTTAAATTTCTTAATTTTTCCTTGTCTTAAAATACAACAATTATACGAAATTTCCACCTACATTTTATTTGTACAACTACAACAACCCATTAATTAATAATTTAATACCAAGTCTCACTACTCTCTAGCTATTACTATAAATAGAACAGCAATTTTAAGCATACCATCATTCAACTCAATCACTATTCACTACACAATAAAAAGTCCTAACTCCTTCCTTCCTTCCTTCTCCGACCCCGGCCACGTATTATAAACCTAGAAAATGGGTTCTCTTGCTGAGACCAATGGCGTTGCCGTGGGGAGGACAACCGTGCACCGCTTGATCGCGGAGGAAGGATCAGTGTTGATGCCGGGTATCCAAGACCCCTTCTCCGCCGCTATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCCGGTTTTGGTGTCTCCGCTGCCCTCCTTGGCTTGCCCGACTTTGGCTTGCTCACGTATAATTCTCTTATCCCTTCTTAATTTTCGCATGCATGAACACGTCATTGTTGGAAATTGTGACAAAAAAAAATGCTAAAATCACACATCGACTATTAGGCTGTTAATGCCATCTAATGTTTAATGTTTTCAATCCAAATTTCAAATATGTTTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGCCGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTATATTATTTCTCACTCCACCCCTATTAACCCACCTACCCCCTACTCCATACAAAAAATAATTAAAAATTCAACCCCTACTCTCCCCCAACCCCACCCCTTTACACATTTCCCACTAACTACATTAAAATAATACCCCACTATCAACTACTACCTATTAAATTAAATAAGTCAATTCAAGTTCCTTAAACTCTGTGACGGTCAAACCGGGTCGAGTATTCCGGAACGGAGGGAGTATTAACTTACCATGCACGTACGATTCAATTGAGGATTTGTAAGTTTCATCCGTAATAAAAAAAAGAAAATTAATTTGACGGGAATTCTACGTAGTTCACCATTGGCCAATAATTGCCACCTTAGTAGTGCGTACATGTATAGATGTACGATCCACTTAATACGGCAAATATCTAAATGCTTATATTAGGAAAGACTTTATATTAAAAAACAAAATTACTACGTAACATATTTAGTTGAATTATTCACATTAATCTTTGGTGTGATTTAGACTTGGTAAATGTCTTAATAAAAATGTTCATGGTTGGACATGAACTATAACTACAAAGCTAATTTTTGGCTGTGGAAATTGTACTTTTTTTTTTTTATCGTTAGTGACAGAGAATTAAAAAACGTTTTGAAAAAGTGACGTGTTAAAAATTGGGCGGCATTAACTAATATATACCAAAATACGAAGTATATACCTTTAAAAAATACAATACACAAGTACCCGTATAACTTTTCGTGATTAAGAAGTACTCGTATTAGTTTTTTTAAGAAGCTACATTTAATGAATTTCCAAACAAAAGGAATCATTTTTCTAAGCTTCATTCACAATATGAATGATTTAAAATGATTTTTTTTTTCTTTAAAGATAAATGAAACTATAGATTATTGAAATGCTTGGGAAATTAATTTTCAAAATTATCATCGATCTTTTTATCTTTTATTGTTGAACTTAATTTTCAATTCATGAAAAAAACCAATTTCAAAATTCTCAAATGTATACTTGGATTTTTTAAATTTTTTCCCCCTAGAGGAGTAGATAACAGAGGTGTACTTCAATGTTTTTTTCTTATAAAGTTTGTAAAATTAAAGGACATGAAAATTAGAGGTTGGTCCAACTCAAAAAATGTCAATGTTATTGTTCCCAACAAGTACGTATATCTTGGACTTCTTAGGCGATAAGTTCCTAAGTAGTCGTGTGAGATCTTATTAGATTCGTCTCAATAAATACTTTTTAAATATTAAATTTTTATAATTTTTTCTTATCCGTAATGAAAGATATTAATATTTAAAATCGTGTATTGACAAACGTGCCTAAATAATTGTGTCATTCTAAAAAGAACGGAAGAAGTATTTCATAAGGGTGGTTGTCTAGATAAGGGAGTGAAATTTTGGTTTGTGGTCTTAAAATAGTCTAGATAAGGGAGTGACAATTTAGTTTGTGGTCTTGTTAAAAAAACAGTATTACTTATTGTATATTTTAAACTAACATAATGGTTTTGTGATACAGGACTGCTGAAGTAGTAGGGGTTGTCCGAAGAATTACAGCTGCTTCTCCAAACTTGTGTGTCGTTGTCGATGGAGGTACAAAAAAAAAGCTCAATTAAATTAATACCATATATGTTCCTGGAAGTTTTTTTACGCTTTATAATATATATAAAAAATATGAAAATTTTGACTGTAAATTCTCACTATTATATATGGAGTACATTAAAATGTTAATTATCACGTGGGATCTTGTTATTTCAACGATTCAAATCCACTTTACTCATGAAAACGAGTAATTTTTTTGTCGGCGACAGACACCGGAGGTGGTGGCCCTTTGAATGTCCAAAGATTCATCAAAGATTTGATTGCAGCTGGTGCCAAGGGTGTTTTTCTAGAGGTAAAAAGAATTTAACATGTCACTATTATTGTACTACAACTCTACAAGAACTAGAATGTGACATTTATGAATAGGGGAAGAACATGGAACTTATTATGACATTCAATTCACTGCTCAGAATTCTCACATGTATTATATGAATTTTGACAGGATCAAGTGTGGCCAAAGAAGTGTGGTAAGTATTTTGGACATTATCAATATTTTGCAACTATATACTACATCCGTTTCAAAAAGATCTTTACAGTTACTATTTGCACGGATTCCGGTGCAATATTTGACTGTTAATATATCTAATTCTGTATGATAAAAAATTATAAAAATTTGATATTTATAAAATACATTTTGAGACCAATCTAACAAGATATCTCATGATAATTTTTTATAGATACAATAGTGAGATTTTATAGTCAAAGTTTTGAATTTTTGGCACATTTTTCAAAGCGTAAAGAACTTTATGAAACGGAGGTAGTATGGTATACCATATGGATAGTTAATAATTTACTTTCATGTTTATCTTATCTTATTTATTAGGTCATATGCGTGGTAAGGCAGTTGTACCTGTAGAAGAACATGCACTTAAAATTGCAGCAGCAAGAGAAGCCATTGGTGATTCTGATTTCTTCTTGGTCGCAAGGACTGATGCAAGGGCACCTCACGGTCTTCAAGAAGCTATTAGACGGGCTAACATTTATAGAGAGGTATAATCCTGAAAATGACAAATCACGTACTAGATACCAAAAAACACCCATGTGATCACAAAAAAGTTCATCCTAACTTTAAATTGGATAAAGCTCTTGTCTTAATCTTTATAATTAAGGATATAACAAATAACGACTTATTAGAAAATAATACAATCACAAAAGTTACTATTTTAGGAAACATGACATTCTGCGTAGACGGACTTCTTAAAATAACACAGTGTGACTAATGTCTTATTTTACTTGCAGGCGGGAGCTGATGCCACTTTTGTTGAGGCACCGGCTAACAGGGAGGAGTTAGACGAGGTTGTGAAAGGTGTGAAAGGTTTGAGGATTGCTAACATGATCGAAGGTGGAAAGACCCCACTACACACACCAGGAGAGTTTAAGGAAATGGGATTCCACTTGATTGCTCATTCACTCTCAACACTATATGCTACAACCAAAGCTTTGGTTGACATCATGAAGGTTCTTAAGGATAAGGGTACTACCAGGGACGATTTGGACAAAATGGTTAGTTTCTCCGAGTTTAATGACATGATCAGCTTGGAATCTTGGTATGAGCTTGAATCAAAATTCAAGAACTTCACCCCAAAATCTTTGGAATCCTAAGAATTGCAATCTAAAAACGTGCACGGTTATGCGATTGAATTTTGTCAGATTATGAAATTAGTTTATTAATTATTATGATTATTATTATTAAGAATTCGTTTGAAATAATGAATACTTGAGTAAATGTTGTGAGTTTGATTTCTTGTATGAGAGCATTGGTTAGATGCATTGTAATCTCTTCGGTTTAGTTATTCAAATATAATCTTAAGAGCTATTTTTTCTATATCAAGCGAATAATTATTGCTTTACATATTTTTGTTGAATGTACGGAGTAAGTATTAGGCATAATTACTACTACGAAAGGG TCACAAATTGACAATAAAATAATCCCAAACCACGAAATTTCCCCCAAATAATTTTAAAAATTACATAAAAAGAAGTTCCCTTAAATTTCTTAATTTTTCCTTGTCTTAAAATACAACAATTATACGAAATTTCCACCTACATTTTATTTGTACAACTACAACAACCCATTAATTAATAATTTAATACCAAGTCTCACTACTCTCTAGCTATTACTATAAATAGAACAGCAATTTTAAGCATACCATCATTCAACTCAATCACTATTCACTACACAATAAAAAGTCCTAACTCCTTCCTTCCTTCCTTCTCCGACCCCGGCCACGTATTATAAACCTAGAAAATGGGTTCTCTTGCTGAGACCAATGGCGTTGCCGTGGGGAGGACAACCGTGCACCGCTTGATCGCGGAGGAAGGATCAGTGTTGATGCCGGGTATCCAAGACCCCTTCTCCGCCGCTATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCCGGTTTTGGTGTCTCCGCTGCCCTCCTTGGCTTGCCCGACTTTGGCTTGCTCACGACTGCTGAAGTAGTAGGGGTTGTCCGAAGAATTACAGCTGCTTCTCCAAACTTGTGTGTCGTTGTCGATGGAGACACCGGAGGTGGTGGCCCTTTGAATGTCCAAAGATTCATCAAAGATTTGATTGCAGCTGGTGCCAAGGGTGTTTTTCTAGAGGATCAAGTGTGGCCAAAGAAGTGTGGTCATATGCGTGGTAAGGCAGTTGTACCTGTAGAAGAACATGCACTTAAAATTGCAGCAGCAAGAGAAGCCATTGGTGATTCTGATTTCTTCTTGGTCGCAAGGACTGATGCAAGGGCACCTCACGGTCTTCAAGAAGCTATTAGACGGGCTAACATTTATAGAGAGGCGGGAGCTGATGCCACTTTTGTTGAGGCACCGGCTAACAGGGAGGAGTTAGACGAGGTTGTGAAAGGTGTGAAAGGTTTGAGGATTGCTAACATGATCGAAGGTGGAAAGACCCCACTACACACACCAGGAGAGTTTAAGGAAATGGGATTCCACTTGATTGCTCATTCACTCTCAACACTATATGCTACAACCAAAGCTTTGGTTGACATCATGAAGGTTCTTAAGGATAAGGGTACTACCAGGGACGATTTGGACAAAATGGTTAGTTTCTCCGAGTTTAATGACATGATCAGCTTGGAATCTTGGTATGAGCTTGAATCAAAATTCAAGAACTTCACCCCAAAATCTTTGGAATCCTAAGAATTGCAATCTAAAAACGTGCACGGTTATGCGATTGAATTTTGTCAGATTATGAAATTAGTTTATTAATTATTATGATTATTATTATTAAGAATTCGTTTGAAATAATGAATACTTGAGTAAATGTTGTGAGTTTGATTTCTTGTATGAGAGCATTGGTTAGATGCATTGTAATCTCTTCGGTTTAGTTATTCAAATATAATCTTAAGAGCTATTTTTTCTATATCAAGCGAATAATTATTGCTTTACATATTTTTGTTGAATGTACGGAGTAAGTATTAGGCATAATTACTACTACGAAAGGG ATGGGTTCTCTTGCTGAGACCAATGGCGTTGCCGTGGGGAGGACAACCGTGCACCGCTTGATCGCGGAGGAAGGATCAGTGTTGATGCCGGGTATCCAAGACCCCTTCTCCGCCGCTATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCCGGTTTTGGTGTCTCCGCTGCCCTCCTTGGCTTGCCCGACTTTGGCTTGCTCACGACTGCTGAAGTAGTAGGGGTTGTCCGAAGAATTACAGCTGCTTCTCCAAACTTGTGTGTCGTTGTCGATGGAGACACCGGAGGTGGTGGCCCTTTGAATGTCCAAAGATTCATCAAAGATTTGATTGCAGCTGGTGCCAAGGGTGTTTTTCTAGAGGATCAAGTGTGGCCAAAGAAGTGTGGTCATATGCGTGGTAAGGCAGTTGTACCTGTAGAAGAACATGCACTTAAAATTGCAGCAGCAAGAGAAGCCATTGGTGATTCTGATTTCTTCTTGGTCGCAAGGACTGATGCAAGGGCACCTCACGGTCTTCAAGAAGCTATTAGACGGGCTAACATTTATAGAGAGGCGGGAGCTGATGCCACTTTTGTTGAGGCACCGGCTAACAGGGAGGAGTTAGACGAGGTTGTGAAAGGTGTGAAAGGTTTGAGGATTGCTAACATGATCGAAGGTGGAAAGACCCCACTACACACACCAGGAGAGTTTAAGGAAATGGGATTCCACTTGATTGCTCATTCACTCTCAACACTATATGCTACAACCAAAGCTTTGGTTGACATCATGAAGGTTCTTAAGGATAAGGGTACTACCAGGGACGATTTGGACAAAATGGTTAGTTTCTCCGAGTTTAATGACATGATCAGCTTGGAATCTTGGTATGAGCTTGAATCAAAATTCAAGAACTTCACCCCAAAATCTTTGGAATCCTAA MGSLAETNGVAVGRTTVHRLIAEEGSVLMPGIQDPFSAAICYKTGFKACFVSGFGVSAALLGLPDFGLLTTAEVVGVVRRITAASPNLCVVVDGDTGGGGPLNVQRFIKDLIAAGAKGVFLEDQVWPKKCGHMRGKAVVPVEEHALKIAAAREAIGDSDFFLVARTDARAPHGLQEAIRRANIYREAGADATFVEAPANREELDEVVKGVKGLRIANMIEGGKTPLHTPGEFKEMGFHLIAHSLSTLYATTKALVDIMKVLKDKGTTRDDLDKMVSFSEFNDMISLESWYELESKFKNFTPKSLES Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21625.1 vs. NCBI nr
Match: gi|902218930|gb|KNA18181.1| (hypothetical protein SOVF_073210 [Spinacia oleracea]) HSP 1 Score: 604.4 bits (1557), Expect = 1.100e-169 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1
BLAST of Spo21625.1 vs. NCBI nr
Match: gi|902218929|gb|KNA18180.1| (hypothetical protein SOVF_073200 [Spinacia oleracea]) HSP 1 Score: 574.3 bits (1479), Expect = 1.200e-160 Identity = 292/306 (95.42%), Postives = 298/306 (97.39%), Query Frame = 1
BLAST of Spo21625.1 vs. NCBI nr
Match: gi|902167267|gb|KNA07347.1| (hypothetical protein SOVF_172690 [Spinacia oleracea]) HSP 1 Score: 548.9 bits (1413), Expect = 5.600e-153 Identity = 278/306 (90.85%), Postives = 289/306 (94.44%), Query Frame = 1
BLAST of Spo21625.1 vs. NCBI nr
Match: gi|902167268|gb|KNA07348.1| (hypothetical protein SOVF_172700 [Spinacia oleracea]) HSP 1 Score: 542.7 bits (1397), Expect = 4.000e-151 Identity = 276/306 (90.20%), Postives = 289/306 (94.44%), Query Frame = 1
BLAST of Spo21625.1 vs. NCBI nr
Match: gi|902154132|gb|KNA05787.1| (hypothetical protein SOVF_187210 [Spinacia oleracea]) HSP 1 Score: 531.6 bits (1368), Expect = 9.300e-148 Identity = 266/303 (87.79%), Postives = 283/303 (93.40%), Query Frame = 1
BLAST of Spo21625.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFB8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073210 PE=4 SV=1) HSP 1 Score: 604.4 bits (1557), Expect = 7.900e-170 Identity = 306/306 (100.00%), Postives = 306/306 (100.00%), Query Frame = 1
BLAST of Spo21625.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFD0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073200 PE=4 SV=1) HSP 1 Score: 574.3 bits (1479), Expect = 8.700e-161 Identity = 292/306 (95.42%), Postives = 298/306 (97.39%), Query Frame = 1
BLAST of Spo21625.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172690 PE=4 SV=1) HSP 1 Score: 548.9 bits (1413), Expect = 3.900e-153 Identity = 278/306 (90.85%), Postives = 289/306 (94.44%), Query Frame = 1
BLAST of Spo21625.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKY2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172700 PE=4 SV=1) HSP 1 Score: 542.7 bits (1397), Expect = 2.800e-151 Identity = 276/306 (90.20%), Postives = 289/306 (94.44%), Query Frame = 1
BLAST of Spo21625.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187210 PE=4 SV=1) HSP 1 Score: 531.6 bits (1368), Expect = 6.500e-148 Identity = 266/303 (87.79%), Postives = 283/303 (93.40%), Query Frame = 1
BLAST of Spo21625.1 vs. ExPASy Swiss-Prot
Match: PDP_DIACA (Petal death protein OS=Dianthus caryophyllus GN=PDP PE=1 SV=1) HSP 1 Score: 488.4 bits (1256), Expect = 5.600e-137 Identity = 242/295 (82.03%), Postives = 268/295 (90.85%), Query Frame = 1
BLAST of Spo21625.1 vs. ExPASy Swiss-Prot
Match: CPPM_ARATH (Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana GN=At1g77060 PE=2 SV=2) HSP 1 Score: 374.4 bits (960), Expect = 1.200e-102 Identity = 182/294 (61.90%), Postives = 224/294 (76.19%), Query Frame = 1
BLAST of Spo21625.1 vs. ExPASy Swiss-Prot
Match: DML_EUBBA (2,3-dimethylmalate lyase OS=Eubacterium barkeri GN=Dml PE=1 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.700e-56 Identity = 114/280 (40.71%), Postives = 172/280 (61.43%), Query Frame = 1
BLAST of Spo21625.1 vs. ExPASy Swiss-Prot
Match: PRPB_AERPE (2-methylisocitrate lyase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=prpB PE=3 SV=2) HSP 1 Score: 193.0 bits (489), Expect = 4.900e-48 Identity = 107/279 (38.35%), Postives = 170/279 (60.93%), Query Frame = 1
BLAST of Spo21625.1 vs. ExPASy Swiss-Prot
Match: PRPB_BACHD (2-methylisocitrate lyase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=prpB PE=3 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.700e-46 Identity = 111/275 (40.36%), Postives = 160/275 (58.18%), Query Frame = 1
BLAST of Spo21625.1 vs. TAIR (Arabidopsis)
Match: AT1G21440.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 378.6 bits (971), Expect = 3.500e-105 Identity = 178/288 (61.81%), Postives = 230/288 (79.86%), Query Frame = 1
BLAST of Spo21625.1 vs. TAIR (Arabidopsis)
Match: AT1G77060.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 374.4 bits (960), Expect = 6.700e-104 Identity = 182/294 (61.90%), Postives = 224/294 (76.19%), Query Frame = 1
BLAST of Spo21625.1 vs. TAIR (Arabidopsis)
Match: AT2G43180.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 139.0 bits (349), Expect = 4.700e-33 Identity = 93/285 (32.63%), Postives = 158/285 (55.44%), Query Frame = 1
BLAST of Spo21625.1 vs. TAIR (Arabidopsis)
Match: AT3G21720.1 (isocitrate lyase) HSP 1 Score: 65.9 bits (159), Expect = 5.100e-11 Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21625.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21625.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21625.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21625.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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