Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTCTCTATCTGAGGGTAATGCTGCCATGGGAAAGACAACCGTGCACCGCCTTATCGCGGAGGAAGGATCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCTGGCTTTGGTGTCTCTGCCGCCCTCCTTGGCTTGCCTGACTTTGGCTTGCTCACGTATAATTCTCTAGCTCTTGTCTTTCTTACTTTGTTTTTCAACATTGTTAATTTCCAAGCTTGATTAGTTTTTAACAAACGCTGCGATAAAAAATGAACGGAGGAAGTATTATATAACACTTATTAAGTTAATTGAGCATAATTAAATTTGTTTTCATTGTAAAATTGTTGGAAAAGTATAAAACTAGTCAATTTAGCAACTCAATTGCGCTCATTTTAGTTATGTACGTCCTTTACCATTCACATTAATACACAATTATTTCAGGAAAAATAAGTTCACACTGAGTACAAACTAATTTACATTTGTGATGAAATGAGTCACTCTTAAGAGTATATTCTTGCATATTCTATCATAATTATTGTAGTAACAATTTAAAAGATTTTTGGCTCCTTTATTTGTACTTTTTTGCTTTCATTGAAGTACCAATTTAATTGTAAATAATAAAGTAATACAAATTGTTTAAATAAAACTTTTGCTAAAAGTGATGGGAATTTCTAAAGCTTTATAAAGTTATTTAGTAAAAAATTGATACAATTTGGAGTTGGGAAGTATAATTAGAAAAGTTGATGAATTATGATATGATAGTTAATTTGAATGAATATGCAAAATCTATCATGTACTGTGTGTGTACGTAGTGGGTAGAGTTTAGTATATTTTCATTTGGTCATTTAGAAATTGAGGTTTTTGCCCCCACCAAGAAAGGAAAAATATTTGTCAATGATTATATTTTCCAATTAATAAGTAATTAACCTGTGACGTACTAAAATAATTGGGTAGGATTTAGGAACCACTACTTTGTACTTTTTCAACATAATTGAATTAGTCAATTGTGTTTAGTATGAAGGGTTACTCCAAAACAGGAAAATCTATAACTCTCTTTATTATTTAAAAAAAAACACCCAAAATAACACATGTCACTTTATAATGAACAGGAGTATACTATTTTCACGGCTTTTAGTAGCTTATATTCGTGTTACGCTCTTGTAGCAATATGTAATAAGAATGGTTTTGTGATACAGAACTGCAGAAGTTGTAGAGGTTGTTCGTAGAATTACTGCTGGATCTCCAAATTTATGTGTGGTTGTTGATGGAGGTAAAACAATTAACTAACTTGCTTACTTTTATATACCACAATTAAATTAAAAGAAGATTTTTTACTCATAATATGAAGTTATTTTTGTTGTTGATGACAGACACCGGCGGTGGTGGCCCTCTGAATGTCCAAAGGTTCATCAAGGACTTGATTAATGCAGGTGCCAAGGGTGTTTTTCTTGAGGTAAAAAAAACTTACATTATTGTGTCATTGTCACATTTTTTTAGTATATGACAATAATAATAGAATATGACTTGACCAATAATATTTATTCTTCAAATATTAAAAATGGAAGTAGTTCAATTTTAGAAATTAATCACATTATTTTTCTTTTCCACAGGATCAAGTGTGGCCTAAGAAGTGTGGTAAGTACTCTCAACAATTGAACATTTTCATTTTCTTTTTGTTACCATTTTATAACATAAAGATTAATTGATCACTTTGTGTTAATCTTATATGTTAGGTCATATGCGTGGTAAGGCTGTTGTGCCTGTAGAAGAGCATGCACTTAAAATCGCAGCAGCAAGAGAAGCCATTGGTGATTCTGATTTTTTCTTGGTCGCAAGGACTGATGCAAGAGCACCCCACGGTCTTCAAGAAGCTATTCGAAGGGCTAACATTTACAGAGAGGTACAATAAGTGTGATATTTTTTTTTTAAAAAAAAAGCTTCTTCTTAATTTTGAATAGAAACAAAGATCTTGTCCTAAAATTTAGTTTGACTAATGCATTTCTTTATCTTGCAGGCGGGAGCTGATGCCACCTTTGTTGAGGCACCGGCCAACAGGGAGGAGTTGGATGAGGTTGTGAAAGGTGTGAAAGGTTTGAGGATCGCTAACATGATCGAAGGTGGAAAGACCCCACTGCACACACCAGGAGAGTTTAAGGAAATGGGATTCCACTTAATTGCTCATTCACTCTCAACACTTTATGCTACAACCAAAGCTTTGGTTGATATCATGAAGGTTCTTAAGGACAAGGGTACAACCAGGGACGATATGGACAAGATTGTTACTTTCTCTGAATTCAACGACATGATTAGTTTGGAATCTTGGTATGAGACGGAATCAAAGTTCAAGAATTTTACCCCAAAATCTTTGGAATCCTAA ATGGGTTCTCTATCTGAGGGTAATGCTGCCATGGGAAAGACAACCGTGCACCGCCTTATCGCGGAGGAAGGATCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCTGGCTTTGGTGTCTCTGCCGCCCTCCTTGGCTTGCCTGACTTTGGCTTGCTCACAACTGCAGAAGTTGTAGAGGTTGTTCGTAGAATTACTGCTGGATCTCCAAATTTATGTGTGGTTGTTGATGGAGACACCGGCGGTGGTGGCCCTCTGAATGTCCAAAGGTTCATCAAGGACTTGATTAATGCAGGTGCCAAGGGTGTTTTTCTTGAGGATCAAGTGTGGCCTAAGAAGTGTGGTCATATGCGTGGTAAGGCTGTTGTGCCTGTAGAAGAGCATGCACTTAAAATCGCAGCAGCAAGAGAAGCCATTGGTGATTCTGATTTTTTCTTGGTCGCAAGGACTGATGCAAGAGCACCCCACGGTCTTCAAGAAGCTATTCGAAGGGCTAACATTTACAGAGAGGCGGGAGCTGATGCCACCTTTGTTGAGGCACCGGCCAACAGGGAGGAGTTGGATGAGGTTGTGAAAGGTGTGAAAGGTTTGAGGATCGCTAACATGATCGAAGGTGGAAAGACCCCACTGCACACACCAGGAGAGTTTAAGGAAATGGGATTCCACTTAATTGCTCATTCACTCTCAACACTTTATGCTACAACCAAAGCTTTGGTTGATATCATGAAGGTTCTTAAGGACAAGGGTACAACCAGGGACGATATGGACAAGATTGTTACTTTCTCTGAATTCAACGACATGATTAGTTTGGAATCTTGGTATGAGACGGAATCAAAGTTCAAGAATTTTACCCCAAAATCTTTGGAATCCTAA ATGGGTTCTCTATCTGAGGGTAATGCTGCCATGGGAAAGACAACCGTGCACCGCCTTATCGCGGAGGAAGGATCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCTGGCTTTGGTGTCTCTGCCGCCCTCCTTGGCTTGCCTGACTTTGGCTTGCTCACAACTGCAGAAGTTGTAGAGGTTGTTCGTAGAATTACTGCTGGATCTCCAAATTTATGTGTGGTTGTTGATGGAGACACCGGCGGTGGTGGCCCTCTGAATGTCCAAAGGTTCATCAAGGACTTGATTAATGCAGGTGCCAAGGGTGTTTTTCTTGAGGATCAAGTGTGGCCTAAGAAGTGTGGTCATATGCGTGGTAAGGCTGTTGTGCCTGTAGAAGAGCATGCACTTAAAATCGCAGCAGCAAGAGAAGCCATTGGTGATTCTGATTTTTTCTTGGTCGCAAGGACTGATGCAAGAGCACCCCACGGTCTTCAAGAAGCTATTCGAAGGGCTAACATTTACAGAGAGGCGGGAGCTGATGCCACCTTTGTTGAGGCACCGGCCAACAGGGAGGAGTTGGATGAGGTTGTGAAAGGTGTGAAAGGTTTGAGGATCGCTAACATGATCGAAGGTGGAAAGACCCCACTGCACACACCAGGAGAGTTTAAGGAAATGGGATTCCACTTAATTGCTCATTCACTCTCAACACTTTATGCTACAACCAAAGCTTTGGTTGATATCATGAAGGTTCTTAAGGACAAGGGTACAACCAGGGACGATATGGACAAGATTGTTACTTTCTCTGAATTCAACGACATGATTAGTTTGGAATCTTGGTATGAGACGGAATCAAAGTTCAAGAATTTTACCCCAAAATCTTTGGAATCCTAA MGSLSEGNAAMGKTTVHRLIAEEGSVLMPGIQDAFSAAICYKTGFKACFVSGFGVSAALLGLPDFGLLTTAEVVEVVRRITAGSPNLCVVVDGDTGGGGPLNVQRFIKDLINAGAKGVFLEDQVWPKKCGHMRGKAVVPVEEHALKIAAAREAIGDSDFFLVARTDARAPHGLQEAIRRANIYREAGADATFVEAPANREELDEVVKGVKGLRIANMIEGGKTPLHTPGEFKEMGFHLIAHSLSTLYATTKALVDIMKVLKDKGTTRDDMDKIVTFSEFNDMISLESWYETESKFKNFTPKSLES Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21626.1 vs. NCBI nr
Match: gi|902218929|gb|KNA18180.1| (hypothetical protein SOVF_073200 [Spinacia oleracea]) HSP 1 Score: 602.8 bits (1553), Expect = 3.300e-169 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 1
BLAST of Spo21626.1 vs. NCBI nr
Match: gi|902218930|gb|KNA18181.1| (hypothetical protein SOVF_073210 [Spinacia oleracea]) HSP 1 Score: 573.5 bits (1477), Expect = 2.100e-160 Identity = 292/306 (95.42%), Postives = 298/306 (97.39%), Query Frame = 1
BLAST of Spo21626.1 vs. NCBI nr
Match: gi|902167268|gb|KNA07348.1| (hypothetical protein SOVF_172700 [Spinacia oleracea]) HSP 1 Score: 550.8 bits (1418), Expect = 1.500e-153 Identity = 279/305 (91.48%), Postives = 292/305 (95.74%), Query Frame = 1
BLAST of Spo21626.1 vs. NCBI nr
Match: gi|902167267|gb|KNA07347.1| (hypothetical protein SOVF_172690 [Spinacia oleracea]) HSP 1 Score: 546.2 bits (1406), Expect = 3.600e-152 Identity = 277/305 (90.82%), Postives = 288/305 (94.43%), Query Frame = 1
BLAST of Spo21626.1 vs. NCBI nr
Match: gi|902154132|gb|KNA05787.1| (hypothetical protein SOVF_187210 [Spinacia oleracea]) HSP 1 Score: 542.0 bits (1395), Expect = 6.900e-151 Identity = 269/302 (89.07%), Postives = 283/302 (93.71%), Query Frame = 1
BLAST of Spo21626.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFD0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073200 PE=4 SV=1) HSP 1 Score: 602.8 bits (1553), Expect = 2.300e-169 Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 1
BLAST of Spo21626.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFB8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073210 PE=4 SV=1) HSP 1 Score: 573.5 bits (1477), Expect = 1.500e-160 Identity = 292/306 (95.42%), Postives = 298/306 (97.39%), Query Frame = 1
BLAST of Spo21626.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKY2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172700 PE=4 SV=1) HSP 1 Score: 550.8 bits (1418), Expect = 1.000e-153 Identity = 279/305 (91.48%), Postives = 292/305 (95.74%), Query Frame = 1
BLAST of Spo21626.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172690 PE=4 SV=1) HSP 1 Score: 546.2 bits (1406), Expect = 2.500e-152 Identity = 277/305 (90.82%), Postives = 288/305 (94.43%), Query Frame = 1
BLAST of Spo21626.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEU2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187210 PE=4 SV=1) HSP 1 Score: 542.0 bits (1395), Expect = 4.800e-151 Identity = 269/302 (89.07%), Postives = 283/302 (93.71%), Query Frame = 1
BLAST of Spo21626.1 vs. ExPASy Swiss-Prot
Match: PDP_DIACA (Petal death protein OS=Dianthus caryophyllus GN=PDP PE=1 SV=1) HSP 1 Score: 489.6 bits (1259), Expect = 2.500e-137 Identity = 240/290 (82.76%), Postives = 265/290 (91.38%), Query Frame = 1
BLAST of Spo21626.1 vs. ExPASy Swiss-Prot
Match: CPPM_ARATH (Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana GN=At1g77060 PE=2 SV=2) HSP 1 Score: 369.8 bits (948), Expect = 2.900e-101 Identity = 178/288 (61.81%), Postives = 220/288 (76.39%), Query Frame = 1
BLAST of Spo21626.1 vs. ExPASy Swiss-Prot
Match: DML_EUBBA (2,3-dimethylmalate lyase OS=Eubacterium barkeri GN=Dml PE=1 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 7.500e-57 Identity = 118/282 (41.84%), Postives = 172/282 (60.99%), Query Frame = 1
BLAST of Spo21626.1 vs. ExPASy Swiss-Prot
Match: PRPB_AERPE (2-methylisocitrate lyase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=prpB PE=3 SV=2) HSP 1 Score: 190.7 bits (483), Expect = 2.400e-47 Identity = 106/279 (37.99%), Postives = 169/279 (60.57%), Query Frame = 1
BLAST of Spo21626.1 vs. ExPASy Swiss-Prot
Match: PRPB_BACHD (2-methylisocitrate lyase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=prpB PE=3 SV=1) HSP 1 Score: 186.8 bits (473), Expect = 3.500e-46 Identity = 110/271 (40.59%), Postives = 159/271 (58.67%), Query Frame = 1
BLAST of Spo21626.1 vs. TAIR (Arabidopsis)
Match: AT1G21440.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 372.9 bits (956), Expect = 1.900e-103 Identity = 175/288 (60.76%), Postives = 228/288 (79.17%), Query Frame = 1
BLAST of Spo21626.1 vs. TAIR (Arabidopsis)
Match: AT1G77060.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 369.8 bits (948), Expect = 1.600e-102 Identity = 178/288 (61.81%), Postives = 220/288 (76.39%), Query Frame = 1
BLAST of Spo21626.1 vs. TAIR (Arabidopsis)
Match: AT2G43180.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 141.4 bits (355), Expect = 9.500e-34 Identity = 98/297 (33.00%), Postives = 166/297 (55.89%), Query Frame = 1
BLAST of Spo21626.1 vs. TAIR (Arabidopsis)
Match: AT3G21720.1 (isocitrate lyase) HSP 1 Score: 66.2 bits (160), Expect = 3.900e-11 Identity = 41/93 (44.09%), Postives = 54/93 (58.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21626.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21626.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21626.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21626.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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