Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCATGCTAGTTACGTACGTAGCAATATGTTTGGACGGTATGGTTTTTGTAGTTATTTATAAGTGTACTATAGGGATATATAGCCCACATATATTCTTTGTTGTATTAATAAAACGTATGAAACTATTGTCGTCGTTTTACTAAAATTGTAACACCTGTAATTTGCACATTATTTAGGTAAGAAATTAAAGAAAGAATATAAATTAATATGTTGCTTTCCCGTGTGAATGTGTGATTTACTCAAAACATAAGATGCACAAAAAAACATATCATAAGGAAGGAATGATTGAATAAGCTAAGTATGATTAAAGTGATCGAGTTAAGTTGTAAAAGTTACCAATAAGAGAAGTGTTGCAACAATTTTAAAACATCCCAAAGTAGCAACATAAAGGAGAATATTTTATTTGAGGGGTGAATTTAAACACAAACAAGTTAGTTCTATTAATAAGAATCATGTAAACCCTAGGAGGGAGAGCTAGAGAAGAAGTGGTAGCTATAGTATAGATAGGTAGATAATGTACTAATTAATGTACTTTTTACGTGCTTTATTACTACTCTGTTTCAAAAAGATCTTTACAGTTACTATTTGCACGGACTTCAATGTAATATTTAACCCCTAATATATCCAATTTTGTATGTGAAAAAATTATAAAAATTTGATATTCTAAAAATACAAACCGAGACCAATCTAACAAGATCTTACATGTAACGTTTTGATGTATGTAATAGTGAGAATTTACGGTCAAAGTTTTTATTCTTCGACACATTTTTCAAAGGGTAAAGAACTTTTAGAAACGGAGGTAGTAGTACTCTATAACTGTTTGACTTTCATGCTTGTATATGTGAATAGTGTAAAAGTACAAATGGTTACAACTAATAAAAAAACGGAAGAAAGTAGTACGTAATTAACCCTTTAGTTTTGCTGCTGATTTTAGTAATGACTAACCTAATCTAGACAGTGGCAAAAAACGATTTTTTTTCCCTTGTAGTGGTATACACTCCAAGTACAATGTATTATAATTTGCAACCTCATTCAATTATTGGATTCCAATCAACTATATTTGTACTCGTGATCCTCGTGTTGGTTTCTTTATAATTAATTTGTTGTGTTCCTAAGCAAGTCCATAACTCAGCCTCCTATTTAAAGAAGGTAGCAATTCAGTGAGTTGTAAGTCTTGTGACACTAAACTATCACTCATAACTAAGTTTACTATTCATTTTGTACATCATCAACGCCTCAACACATTTCGGTAAGTTTTTTGTCTATATTTATTAGATTCAACTACGTGTTTTCCTTCATACTTTCCTTCATCTAAAATCATGTTTTTAATTCTTGTGATCGAGTTGCGTTAATCACCACCATAGCATTACACACACCCATATTCTATGCGGTCAAGTGGCCAACCAATGAAGCATTGACCTACTGAATTAAAATTAAGAGTCTTTGTATGATCTGTCTCAAGTGTGAACCCCTCTCTTCCATTTATAATTTATATTGTCATTTAAAAAGAAAAAAAAATATATGTAGCCCAAAAAAGTATGGCCTTTGCCTCAACGGTTTTAATTAGTTAACTTATATACTTCCCCCGTTCCTTAAATATTGCACCATTGTTGACTTTTTACTTTTCAAGACATACTTTAACTCTTAATATCTCGAATTATGTAGAAGTAAAAAATTATAAAAACTTGATATTTAGAAAATATATATTAATACTAATCTAAAATATCTTACATGACTACAATTGTTCTTAGGTATGAATCACAAATTAAAATATGACCAAAAATCTAGTGTGAATAGTGTAAAAAACAAGATAATGCAATATTACGAAACAGAGGAAATATATATATTTCCATGTTATGCAGAATTTAAAGGCTTTAAGGGCACCTCTGAGCAGTGAGTCAGTGACCCTAGAGTCTCAAGTCCAGAAGCCTTAAACACTAAGGTTAATTAATGGCTTTGTAAGTTGTTAGAAACTTAATGTTACTCACATGTAAGTTACTCCATATTGAAAAAGAGTATCAATGAAATCTTGAACGAGTGAATAAACACTACAAGAAGTTGTACTATTAACGACGGGAAATCCCGTCGCTAAAGGCCAATAATTGTTGATTAACGATGGGATTTTCCGTCGCGAACCCGTCATAAAAGGGGGCCGTCGTTAATGGAAAATCCCGTCGTTAACCCGTCGTAAAAGACATTTGCGACGGTTGTTCCCGTCTTTGTTGGGTTGTTATCCCCGTCCTAAAGCCTTTTGCGACGGGATTTTTACCCGTCGTTATTAAGTTGTCGTAAAAGATACAAATTTTTGTAGTGAAAACTGACCGCCTGTGTTACTATGTACAATTAGTCTCAAGTTCGAATCCCCCGACCAATTTGTATTATGTAATGCCATTGTGGCTCGATTTTTAGTATGAAAAAGAATGTAAGTTAACATAAGTTGATAAGAAATAGTGACAATTTTTGGCAGGTGACAGAACGGTAGAAATGGAACGGAAAACAGTGAAGAGTTTTGTGGTGGTAGCGATATCAATATGGGTGATACTAGTTGAAGCAATTATAACAGCGTCAGGTCTAGATTTGGACGTAGGAATTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATAGGTATCAGTAAAGAAGATAAGTTCAATTTATACGTACAAGGCTATCTTGATAAAGTTGTAGAAAATAATAGAGAGGTTTTTAGAGCACATATATTTCCTGATGCTTCTGCATATGCGAAAGCGAATATGTTTATTCAACAGGTGCCTGTAGGTAATAAATATCGTCTACCAATGAAATACAAGAGTACATATGGTGATATTGAGAAAAATGGTGGCAGTAGAACCAAACTGGGATTGGGTGTTAAACAACTTAACAAGTTTATCAACAATGTTTATGGGAAGCCGTTTGATGCTAAGACAGAAGCTCAGTTTATGCTTATTGTTATTCAAACGATAGCAGAGGCAACACGATTCAAGTATATTGAGAACATGATTCTGGCTAAGTTTGATTCATTTGAGAATAAGCCCGACCCTAAAACGATTGAATTGGAAGTGAGTTGGCAGAAGATCACGAAAGGAATTAAGAGCTCTGATGCGAAAGGGGAGATTAAGCCAGAGCTAATTTTAAAGGATGCGAAGGGTAAAACTTGGAAAGTGAACAAAGTCAGTCAAATTGCTCCAGACATGGGTCTTCTCAAATACGAGGGCTGAAATACGAAGGCAAGTAAGCCTTGTACGGAGTATATGTATGTTTTATTGTTAGTAACTGTGTATGAATAAGGCAGCAATAATAATGTATTATAACTATTATTGCTGTATGTTGTATGTATTTGATTCCCTAATTAATGAAAGCAAATTTCTTATTGATACAGTC ATGCATGCTAGTTACGTACGTAGCAATATGTTTGGACGTTTACTATTCATTTTGTACATCATCAACGCCTCAACACATTTCGGTGACAGAACGGTAGAAATGGAACGGAAAACAGTGAAGAGTTTTGTGGTGGTAGCGATATCAATATGGGTGATACTAGTTGAAGCAATTATAACAGCGTCAGGTCTAGATTTGGACGTAGGAATTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATAGGTATCAGTAAAGAAGATAAGTTCAATTTATACGTACAAGGCTATCTTGATAAAGTTGTAGAAAATAATAGAGAGGTTTTTAGAGCACATATATTTCCTGATGCTTCTGCATATGCGAAAGCGAATATGTTTATTCAACAGGTGCCTGTAGGTAATAAATATCGTCTACCAATGAAATACAAGAGTACATATGGTGATATTGAGAAAAATGGTGGCAGTAGAACCAAACTGGGATTGGGTGTTAAACAACTTAACAAGTTTATCAACAATGTTTATGGGAAGCCGTTTGATGCTAAGACAGAAGCTCAGTTTATGCTTATTGTTATTCAAACGATAGCAGAGGCAACACGATTCAAGTATATTGAGAACATGATTCTGGCTAAGTTTGATTCATTTGAGAATAAGCCCGACCCTAAAACGATTGAATTGGAAGTGAGTTGGCAGAAGATCACGAAAGGAATTAAGAGCTCTGATGCGAAAGGGGAGATTAAGCCAGAGCTAATTTTAAAGGATGCGAAGGGTAAAACTTGGAAAGTGAACAAAGTCAGTCAAATTGCTCCAGACATGGGTCTTCTCAAATACGAGGGCTGAAATACGAAGGCAAGTAAGCCTTGTACGGAGTATATGTATGTTTTATTGTTAGTAACTGTGTATGAATAAGGCAGCAATAATAATGTATTATAACTATTATTGCTGTATGTTGTATGTATTTGATTCCCTAATTAATGAAAGCAAATTTCTTATTGATACAGTC ATGCATGCTAGTTACGTACGTAGCAATATGTTTGGACGTTTACTATTCATTTTGTACATCATCAACGCCTCAACACATTTCGGTGACAGAACGGTAGAAATGGAACGGAAAACAGTGAAGAGTTTTGTGGTGGTAGCGATATCAATATGGGTGATACTAGTTGAAGCAATTATAACAGCGTCAGGTCTAGATTTGGACGTAGGAATTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATAGGTATCAGTAAAGAAGATAAGTTCAATTTATACGTACAAGGCTATCTTGATAAAGTTGTAGAAAATAATAGAGAGGTTTTTAGAGCACATATATTTCCTGATGCTTCTGCATATGCGAAAGCGAATATGTTTATTCAACAGGTGCCTGTAGGTAATAAATATCGTCTACCAATGAAATACAAGAGTACATATGGTGATATTGAGAAAAATGGTGGCAGTAGAACCAAACTGGGATTGGGTGTTAAACAACTTAACAAGTTTATCAACAATGTTTATGGGAAGCCGTTTGATGCTAAGACAGAAGCTCAGTTTATGCTTATTGTTATTCAAACGATAGCAGAGGCAACACGATTCAAGTATATTGAGAACATGATTCTGGCTAAGTTTGATTCATTTGAGAATAAGCCCGACCCTAAAACGATTGAATTGGAAGTGAGTTGGCAGAAGATCACGAAAGGAATTAAGAGCTCTGATGCGAAAGGGGAGATTAAGCCAGAGCTAATTTTAAAGGATGCGAAGGGTAAAACTTGGAAAGTGAACAAAGTCAGTCAAATTGCTCCAGACATGGGTCTTCTCAAATACGAGGGCTGA MHASYVRSNMFGRLLFILYIINASTHFGDRTVEMERKTVKSFVVVAISIWVILVEAIITASGLDLDVGIATKTTYSKLLTDIRDNVKDPKLKYGGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKVVENNREVFRAHIFPDASAYAKANMFIQQVPVGNKYRLPMKYKSTYGDIEKNGGSRTKLGLGVKQLNKFINNVYGKPFDAKTEAQFMLIVIQTIAEATRFKYIENMILAKFDSFENKPDPKTIELEVSWQKITKGIKSSDAKGEIKPELILKDAKGKTWKVNKVSQIAPDMGLLKYEG Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21696.1 vs. NCBI nr
Match: gi|902225392|gb|KNA20052.1| (hypothetical protein SOVF_055950 [Spinacia oleracea]) HSP 1 Score: 558.9 bits (1439), Expect = 5.700e-156 Identity = 285/287 (99.30%), Postives = 287/287 (100.00%), Query Frame = 1
BLAST of Spo21696.1 vs. NCBI nr
Match: gi|870850466|gb|KMT02566.1| (hypothetical protein BVRB_9g202530 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 240.4 bits (612), Expect = 4.500e-60 Identity = 149/287 (51.92%), Postives = 187/287 (65.16%), Query Frame = 1
BLAST of Spo21696.1 vs. NCBI nr
Match: gi|731354828|ref|XP_010688810.1| (PREDICTED: protein synthesis inhibitor PD-S2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 236.5 bits (602), Expect = 6.500e-59 Identity = 147/285 (51.58%), Postives = 185/285 (64.91%), Query Frame = 1
BLAST of Spo21696.1 vs. NCBI nr
Match: gi|731354506|ref|XP_010688633.1| (PREDICTED: protein synthesis inhibitor PD-S2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 228.0 bits (580), Expect = 2.300e-56 Identity = 140/289 (48.44%), Postives = 183/289 (63.32%), Query Frame = 1
BLAST of Spo21696.1 vs. NCBI nr
Match: gi|731354508|ref|XP_010688634.1| (PREDICTED: ribosome-inactivating protein PD-L3/PD-L4-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 218.8 bits (556), Expect = 1.400e-53 Identity = 138/290 (47.59%), Postives = 182/290 (62.76%), Query Frame = 1
BLAST of Spo21696.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMG6_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=SOVF_055950 PE=3 SV=1) HSP 1 Score: 558.9 bits (1439), Expect = 4.000e-156 Identity = 285/287 (99.30%), Postives = 287/287 (100.00%), Query Frame = 1
BLAST of Spo21696.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EHV6_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202530 PE=3 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 3.100e-60 Identity = 149/287 (51.92%), Postives = 187/287 (65.16%), Query Frame = 1
BLAST of Spo21696.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMU1_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202490 PE=3 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 1.600e-56 Identity = 140/289 (48.44%), Postives = 183/289 (63.32%), Query Frame = 1
BLAST of Spo21696.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRN5_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202500 PE=3 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 9.700e-54 Identity = 138/290 (47.59%), Postives = 182/290 (62.76%), Query Frame = 1
BLAST of Spo21696.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRF2_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202460 PE=3 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 9.100e-52 Identity = 126/288 (43.75%), Postives = 179/288 (62.15%), Query Frame = 1
BLAST of Spo21696.1 vs. ExPASy Swiss-Prot
Match: RIP1_PHYAM (Antiviral protein I OS=Phytolacca americana GN=PAP1 PE=1 SV=2) HSP 1 Score: 154.8 bits (390), Expect = 1.500e-36 Identity = 109/289 (37.72%), Postives = 161/289 (55.71%), Query Frame = 1
BLAST of Spo21696.1 vs. ExPASy Swiss-Prot
Match: RIP4_PHYHE (Heterotepalin-4 OS=Phytolacca heterotepala GN=RIP1 PE=1 SV=2) HSP 1 Score: 146.7 bits (369), Expect = 4.200e-34 Identity = 108/287 (37.63%), Postives = 160/287 (55.75%), Query Frame = 1
BLAST of Spo21696.1 vs. ExPASy Swiss-Prot
Match: RIPA_PHYAM (Antiviral protein alpha OS=Phytolacca americana PE=1 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 7.900e-33 Identity = 107/282 (37.94%), Postives = 151/282 (53.55%), Query Frame = 1
BLAST of Spo21696.1 vs. ExPASy Swiss-Prot
Match: RIPL2_PHYDI (Ribosome-inactivating protein PD-L3/PD-L4 OS=Phytolacca dioica PE=1 SV=2) HSP 1 Score: 141.7 bits (356), Expect = 1.400e-32 Identity = 96/261 (36.78%), Postives = 143/261 (54.79%), Query Frame = 1
BLAST of Spo21696.1 vs. ExPASy Swiss-Prot
Match: RIP2_PHYAM (Antiviral protein 2 OS=Phytolacca americana GN=PAP2 PE=1 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 6.700e-32 Identity = 106/290 (36.55%), Postives = 150/290 (51.72%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21696.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21696.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21696.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21696.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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