Spo21697 (gene) | SpinachBase

Overview


Name	Spo21697
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	rRNA N-glycosidase (3.2.2.22)
Location	chr2 : 56983149 .. 56983523 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGGAAAACAATGAAGGCTTTTGTGGTGGTAGCGATATCAATAATGGTGATACTTGAGCCTAGTTTCGCAGCATCTGATCTAAGTTTGGATGTTGGGAGTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATCGGTATCAGTAAAGAAGATAAGTTCAATTTATATGTGCAAGGCTATCTTGACAAGATTACAATTAAAAATAAAGAGGTTTCTAGAGCACATATTGTTCCGGTATGA

mRNA sequence

ATGGAAGGGAAAACAATGAAGGCTTTTGTGGTGGTAGCGATATCAATAATGGTGATACTTGAGCCTAGTTTCGCAGCATCTGATCTAAGTTTGGATGTTGGGAGTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATCGGTATCAGTAAAGAAGATAAGTTCAATTTATATGTGCAAGGCTATCTTGACAAGATTACAATTAAAAATAAAGAGGTTTCTAGAGCACATATTGTTCCGGTATGA

Coding sequence (CDS)

ATGGAAGGGAAAACAATGAAGGCTTTTGTGGTGGTAGCGATATCAATAATGGTGATACTTGAGCCTAGTTTCGCAGCATCTGATCTAAGTTTGGATGTTGGGAGTGCTACAAAAACAACCTACTCCAAACTGTTAACCGACATTCGTGATAATGTCAAGGATCCGAAACTCAAGTATGGAGGTACCAACATACCAGTAATGGCAAAAGAAGGAACATCCAAGTTACTTTTGATTGATCTCAAGTCATCAGATGGAAAGACAATCACGATCGGTATCAGTAAAGAAGATAAGTTCAATTTATATGTGCAAGGCTATCTTGACAAGATTACAATTAAAAATAAAGAGGTTTCTAGAGCACATATTGTTCCGGTATGA

Protein sequence

MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAHIVPV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21697.1	Spo21697.1	mRNA

Homology

[Close]

BLAST of Spo21697.1 vs. NCBI nr
Match: gi|902225393|gb|KNA20053.1| (hypothetical protein SOVF_055960 [Spinacia oleracea])

HSP 1 Score: 204.9 bits (520), Expect = 8.100e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


		  
Query: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60
           MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG
Sbjct: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60

Query: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 108
           GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD
Sbjct: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 107

[Close]

BLAST of Spo21697.1 vs. NCBI nr
Match: gi|902225392|gb|KNA20052.1| (hypothetical protein SOVF_055950 [Spinacia oleracea])

HSP 1 Score: 194.5 bits (493), Expect = 1.100e-46
Identity = 105/124 (84.68%), Postives = 109/124 (87.90%), Query Frame = 1


		  
Query: 1   MEGKTMKAFVVVAISIMVIL-EPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKY 60
           ME KT+K+FVVVAISI VIL E    AS L LDVG ATKTTYSKLLTDIRDNVKDPKLKY
Sbjct: 1   MERKTVKSFVVVAISIWVILVEAIITASGLDLDVGIATKTTYSKLLTDIRDNVKDPKLKY 60

Query: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRA 120
           GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK+   N+EV RA
Sbjct: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKVVENNREVFRA 120

Query: 121 HIVP 124
           HI P
Sbjct: 121 HIFP 124

[Close]

BLAST of Spo21697.1 vs. NCBI nr
Match: gi|731354508|ref|XP_010688634.1| (PREDICTED: ribosome-inactivating protein PD-L3/PD-L4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.4 bits (272), Expect = 4.600e-21
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DLS D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLLLEPSCAA-DLSFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
           V+ A     K LL+D+K+ +G TIT  ++K D   LY+  YLDK
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGATITFALNKND---LYLDAYLDK 100

[Close]

BLAST of Spo21697.1 vs. NCBI nr
Match: gi|731354506|ref|XP_010688633.1| (PREDICTED: protein synthesis inhibitor PD-S2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 108.2 bits (269), Expect = 1.000e-20
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DL+ D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLVLEPSCAA-DLTFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           V+ A     K LL+D+K+ +G  IT  ++K D   LY+ GYLD+   K     RAH
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGSKITFALNKND---LYLDGYLDQFEGK----PRAH 108

[Close]

BLAST of Spo21697.1 vs. NCBI nr
Match: gi|870850465|gb|KMT02565.1| (hypothetical protein BVRB_9g202520 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 107.5 bits (267), Expect = 1.800e-20
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1


		  
Query: 10  VVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP-VMA 69
           + VAISI ++LEPS AA DLS D+GSATKT +SKLL+D+RD VKDPKLKYG TN+P + A
Sbjct: 7   LAVAISIWLVLEPSCAA-DLSFDLGSATKTIFSKLLSDVRDKVKDPKLKYGDTNVPAIAA 66

Query: 70  KEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
               SK LL+D+K+ +G TIT  ++K D   +Y+  YLDK
Sbjct: 67  PSNPSKYLLVDIKTPEGATITFALNKND---IYLDAYLDK 102

[Close]

BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKN2_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=SOVF_055960 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.600e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


		  
Query: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60
           MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG
Sbjct: 1   MEGKTMKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYG 60

Query: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 108
           GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD
Sbjct: 61  GTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 107

[Close]

BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMG6_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=SOVF_055950 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 7.600e-47
Identity = 105/124 (84.68%), Postives = 109/124 (87.90%), Query Frame = 1


		  
Query: 1   MEGKTMKAFVVVAISIMVIL-EPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKY 60
           ME KT+K+FVVVAISI VIL E    AS L LDVG ATKTTYSKLLTDIRDNVKDPKLKY
Sbjct: 1   MERKTVKSFVVVAISIWVILVEAIITASGLDLDVGIATKTTYSKLLTDIRDNVKDPKLKY 60

Query: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRA 120
           GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK+   N+EV RA
Sbjct: 61  GGTNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKVVENNREVFRA 120

Query: 121 HIVP 124
           HI P
Sbjct: 121 HIFP 124

[Close]

BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRN5_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202500 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.200e-21
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DLS D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLLLEPSCAA-DLSFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
           V+ A     K LL+D+K+ +G TIT  ++K D   LY+  YLDK
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGATITFALNKND---LYLDAYLDK 100

[Close]

BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMU1_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202490 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.200e-21
Identity = 62/116 (53.45%), Postives = 81/116 (69.83%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP 65
           M+ ++ V ISI ++LEPS AA DL+ D+GSATKT YSKLL+D+RD VKDPKLKYG TN+P
Sbjct: 1   MRVWLAVVISIWLVLEPSCAA-DLTFDLGSATKTIYSKLLSDVRDKVKDPKLKYGDTNLP 60

Query: 66  VM-AKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           V+ A     K LL+D+K+ +G  IT  ++K D   LY+ GYLD+   K     RAH
Sbjct: 61  VIAAPSNPPKYLLVDIKTPEGSKITFALNKND---LYLDGYLDQFEGK----PRAH 108

[Close]

BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMK7_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202520 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.200e-20
Identity = 58/100 (58.00%), Postives = 75/100 (75.00%), Query Frame = 1


		  
Query: 10  VVVAISIMVILEPSFAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIP-VMA 69
           + VAISI ++LEPS AA DLS D+GSATKT +SKLL+D+RD VKDPKLKYG TN+P + A
Sbjct: 7   LAVAISIWLVLEPSCAA-DLSFDLGSATKTIFSKLLSDVRDKVKDPKLKYGDTNVPAIAA 66

Query: 70  KEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDK 109
               SK LL+D+K+ +G TIT  ++K D   +Y+  YLDK
Sbjct: 67  PSNPSKYLLVDIKTPEGATITFALNKND---IYLDAYLDK 102

[Close]

BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP4_SAPOF (Ribosome-inactivating protein saporin-4 (Fragment) OS=Saponaria officinalis GN=SAP4 PE=3 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 7.400e-11
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPSFAASD----LSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGG 65
           MK +VV  I+ +++   ++  +D    ++LD+ + T   YS  +  IR+NVKDP LKYGG
Sbjct: 1   MKIYVVATIAWILLQFSAWTTTDAVTSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGG 60

Query: 66  TNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+I V+      K L I+ +SS G T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 61  TDIAVIGPPSKGKFLRINFQSSRG-TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 112

[Close]

BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP2_SAPOF (Ribosome-inactivating protein saporin-2 OS=Saponaria officinalis GN=SAP2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.400e-11
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPSFAASD----LSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGG 65
           MK +VV  I+ +++   ++  +D    ++LD+ + T   YS  +  IR+NVKDP LKYGG
Sbjct: 1   MKIYVVATIAWILLQFSAWTTTDAVTSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGG 60

Query: 66  TNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+I V+      K L I+ +SS G T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 61  TDIAVIGPPSKDKFLRINFQSSRG-TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 112

[Close]

BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP6_SAPOF (Ribosome-inactivating protein saporin-6 OS=Saponaria officinalis GN=SAP6 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 7.400e-11
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPSFAASD----LSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGG 65
           MK +VV  I+ +++   ++  +D    ++LD+ + T   YS  +  IR+NVKDP LKYGG
Sbjct: 1   MKIYVVATIAWILLQFSAWTTTDAVTSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGG 60

Query: 66  TNIPVMAKEGTSKLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+I V+      K L I+ +SS G T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 61  TDIAVIGPPSKEKFLRINFQSSRG-TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 112

[Close]

BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP1_PHYAM (Antiviral protein I OS=Phytolacca americana GN=PAP1 PE=1 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 2.800e-10
Identity = 43/105 (40.95%), Postives = 66/105 (62.86%), Query Frame = 1


		  
Query: 6   MKAFVVVAISIMVILEPS--FAASDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTN 65
           MK+ +VV ISI +IL P+  +A + +  +VGS T + Y+  L D+R+  KDP LK  G  
Sbjct: 1   MKSMLVVTISIWLILAPTSTWAVNTIIYNVGSTTISKYATFLNDLRNEAKDPSLKCYG-- 60

Query: 66  IPVMAKEGTS-KLLLIDLKSSDGKTITIGISKEDKFNLYVQGYLD 108
           IP++    T+ K +L++L+ S+ KTIT+ + +    NLYV GY D
Sbjct: 61  IPMLPNTNTNPKYVLVELQGSNKKTITLMLRRN---NLYVMGYSD 100

[Close]

BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Match: RIP7_SAPOF (Ribosome-inactivating protein saporin-7 OS=Saponaria officinalis GN=SAP7 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.700e-10
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 1


		  
Query: 27  SDLSLDVGSATKTTYSKLLTDIRDNVKDPKLKYGGTNIPVMAKEGTSKLLLIDLKSSDGK 86
           + ++LD+ + T   YS  +  IR+NVKDP LKYGGT+I V+      K L I+ +SS G 
Sbjct: 2   TSITLDLVNPTAGQYSSFVDKIRNNVKDPNLKYGGTDIAVIGPPSKEKFLRINFQSSRG- 61

Query: 87  TITIGISKEDKFNLYVQGYLDKITIKNKEVSRAH 121
           T+++G+ ++   NLYV  YL    + N  V+RA+
Sbjct: 62  TVSLGLKRD---NLYVVAYL---AMDNTNVNRAY 88

The following BLAST results are available for this feature:

BLAST of Spo21697.1 vs. NCBI nr
BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
BLAST of Spo21697.1 vs. TAIR (Arabidopsis)

BLAST of Spo21697.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902225393\|gb\|KNA20053.1\|	8.1e-50	100.	hypothetical protein SOVF_0559...	[more]
gi\|902225392\|gb\|KNA20052.1\|	1.1e-46	84.6	hypothetical protein SOVF_0559...	[more]
gi\|731354508\|ref\|XP_010688634.1\|	4.6e-21	57.6	PREDICTED: ribosome-inactivati...	[more]
gi\|731354506\|ref\|XP_010688633.1\|	1.0e-20	53.4	PREDICTED: protein synthesis i...	[more]
gi\|870850465\|gb\|KMT02565.1\|	1.8e-20	58.0	hypothetical protein BVRB_9g20...	[more]

BLAST of Spo21697.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RKN2_SPIOL	5.6e-50	100.	rRNA N-glycosidase OS=Spinacia...	[more]
A0A0K9RMG6_SPIOL	7.6e-47	84.6	rRNA N-glycosidase OS=Spinacia...	[more]
A0A0J8BRN5_BETVU	3.2e-21	57.6	rRNA N-glycosidase OS=Beta vul...	[more]
A0A0J8BMU1_BETVU	7.2e-21	53.4	rRNA N-glycosidase OS=Beta vul...	[more]
A0A0J8BMK7_BETVU	1.2e-20	58.0	rRNA N-glycosidase OS=Beta vul...	[more]

BLAST of Spo21697.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RIP4_SAPOF	7.4e-11	36.9	Ribosome-inactivating protein ...	[more]
RIP2_SAPOF	7.4e-11	36.9	Ribosome-inactivating protein ...	[more]
RIP6_SAPOF	7.4e-11	36.9	Ribosome-inactivating protein ...	[more]
RIP1_PHYAM	2.8e-10	40.9	Antiviral protein I OS=Phytola...	[more]
RIP7_SAPOF	3.7e-10	40.4	Ribosome-inactivating protein ...	[more]

BLAST of Spo21697.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001574	Ribosome-inactivating protein	PFAM	PF00161	RIP	coord: 37..106 score: 2.
IPR001574	Ribosome-inactivating protein	unknown	SSF56371	Ribosome inactivating proteins (RIP)	coord: 28..111 score: 3.01
IPR016138	Ribosome-inactivating protein, subdomain 1	GENE3D	3.40.420.10		coord: 28..111 score: 1.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006952	defense response
cellular_component	GO:0005840	ribosome
molecular_function	GO:0030598	rRNA N-glycosylase activity
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo20868	0.81	Barchart \| Table
Spo21696	0.66	Barchart \| Table